BAC Information

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BAC

Clone NameB6Ng01-309E13
Chromosome5 (Build37)
Map Location 109,241,835 - 109,242,918
singlet/doubletsinglet
Overlap genenone
Upstream geneEvi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571, Gak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564, 1810008K16Rik, EG627479
Downstream geneEG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198, 4930522L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309E13.bB6Ng01-309E13.g
ACCGA101564GA101565
length1,1801,072
definitionB6Ng01-309E13.b B6Ng01-309E13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagggtcacttatacatactatcatatcatctgcaaatagtga
tatttttatttctccctttccaaattgtatccccttagtctccttttttt
gtcaaattgctctggctaggacttcaactactagattgaataggtagggt
gtggggagctgcactcacatttgccattataagatggcactgacagctgt
gttctaagtagtaaataatctgcacatgtgcaggggcagttttcccgcca
tgtgctctgcctttctcgtgatgacaactgggccgatgggctgcagccaa
tcagggagtgacacgtcctaggcggaggataattctccttaaaagggacg
gggttctggcactccctctcttcgtctcttcgtctcttcacctcttcgtc
tctttctcttcgtcttttcctctgctctcttcctctgctctctgcgtctc
tctctcttcctctctgcctctctctgctgcgctcttcctctcttgctcct
gagtaagcaataaagctttcccacagaagattctggcttgttgcgtcttt
tctggccggttgcgaacccgtgtaagagtagggggaaagctggcagcctt
gtcgagaccctgagtttagtgggtatgctaccagcttctctccatttact
ttgatgttggctactggtttgctgtatattgcttttattatgtttaggta
tgggccttgaatttctgatctttccaagacttttatcctgaatgggtgtt
ggattttgtcaaatgctttctcagcatctaaggagatgatcatgtggttt
ttgtctttgagtttgtttatataatggattacattgatggattttcatat
attaaaccatccttgcatccctggaataaaacctacttggtcaggatgga
tgattgctctaatgtgttcttggattcagttagcgagaattttattgagt
atttttgcatcattatttgccagggactctggttggagtcagcttggaca
gatggaaagtttggaaggctttttccatgagaagagttttcaagaaactt
aactctcgggatctttgcctatttccttaacccataaatattccaatcca
ccttagttcagtgatgatcgctgtaccgctattagcttacttagaatgcc
tttagactgtagtgcaaccagagcctaaga
gaattctctccaatacatgtgaaggtgaaaaataaagttaaaacaaagtt
aaaatgtccacaaatgagcattcaccaagcctttcagatttaaaggatgg
gaatggataacataggctgaatttcatttgagaagctgaaaatgtcatgt
gtagtggtaggatttaatacattgtgtttcttataggaaatgaataaaaa
cattgctttatttgatattcagtatctcttaacttctgtgattctattta
gaaaggggcaccatgagaacatgaacttagcttgaaaatgttaccaaaaa
tggagtcatgattagtcataatagagcaacttagccaggcatgtggaaaa
tgcatgtgatcaagactgaaggaagatgctgagacagctggattttaggt
tcaattctttcaattgctctctatgatatcctgtcttagtttgaattagt
cttttctttaatgataaatgtaacttagcttgttggcacattcctttatc
ttcagtaatcagaaggcaagacaggggttatttgtgagttcgagggacaa
tcctgtctacctatcaagttctatgcaatccaaagttccaaaacagactc
tttctcaatggctttgcgtatgaaaattgagtatttatgtgtcaacacat
ctaagttgtcaactcgagacttcacatgagatattaagttacttacgtga
tatagcaacatattaccaaaaaattagccaaagttattaatagtggattg
taatctgaagtcgactttatatgtttgaaaattaccataagaaaagagtc
agagcaagcaagtaagtcagaaagagatgagggaccagcttgccagttca
gaaaatcattttcttcggaaaatggattctaaagcttatatgcagatata
attctgtcatgtttatagaaaagaacattgatataggagtagatgagaat
gaggtttccaactgaaaggaccagcaatatctcaacaaattatagaagga
acttccaacctctagaaaggagatgctcatgacatacagagccttacgaa
ctctaatagactggagccgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109241835_109242918
seq2: B6Ng01-309E13.g_68_1139

seq1  GAATTCTCTCCAATACATGTGAAGGTGAAAAATAAAGTTAAAACAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAATACATGTGAAGGTGAAAAATAAAGTTAAAACAAAGTT  50

seq1  AAAATGTCCACAAATGAGCATTCACCAAGCCTTTCAGATTTAAAGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCACAAATGAGCATTCACCAAGCCTTTCAGATTTAAAGGATGG  100

seq1  GAATGGATAACATAGGCTGAATTTCATTTGAGAAGCTGAAAATGTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATAACATAGGCTGAATTTCATTTGAGAAGCTGAAAATGTCATGT  150

seq1  GTAGTGGTAGGATTTAATACATTGTGTTTCTTATAGGAAATGAATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGTAGGATTTAATACATTGTGTTTCTTATAGGAAATGAATAAAAA  200

seq1  CATTGCTTTATTTGATATTCAGTATCTCTTAACTTCTGTGATTCTATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTTATTTGATATTCAGTATCTCTTAACTTCTGTGATTCTATTTA  250

seq1  GAAAGGGGCACCATGAGAACATGAACTTAGCTTGAAAATGTTACCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGCACCATGAGAACATGAACTTAGCTTGAAAATGTTACCAAAAA  300

seq1  TGGAGTCATGATTAGTCATAATAGAGCAACTTAGCCAGGCATGTGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCATGATTAGTCATAATAGAGCAACTTAGCCAGGCATGTGGAAAA  350

seq1  TGCATGTGATCAAGACTGAAGGAAGATGCTGAGACAGCTGGATTTTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGATCAAGACTGAAGGAAGATGCTGAGACAGCTGGATTTTAGGT  400

seq1  TCAATTCTTTCAATTGCTCTCTATGATATCCTGTCTTAGTTTGAATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTTTCAATTGCTCTCTATGATATCCTGTCTTAGTTTGAATTAGT  450

seq1  CTTTTCTTTAATGATAAATGTAACTTAGCTTGTTGGCACATTCCTTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTAATGATAAATGTAACTTAGCTTGTTGGCACATTCCTTTATC  500

seq1  TTCAGTAATCAGAAGGCAAGACAGGGGTTATTTGTGAGTTCGAGGGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATCAGAAGGCAAGACAGGGGTTATTTGTGAGTTCGAGGGACAA  550

seq1  TCCTGTCTACCTATCAAGTTCTATGCAATCCAAAGTTCCAAAACAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTACCTATCAAGTTCTATGCAATCCAAAGTTCCAAAACAGACTC  600

seq1  TTTCTCAATGGCTTTGCGTATGAAAATTGAGTATTTATGTGTCAACACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATGGCTTTGCGTATGAAAATTGAGTATTTATGTGTCAACACAT  650

seq1  CTAAGTTGTCAACTCGAGACTTCACATGAGATATTAAGTTACTTACGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGTCAACTCGAGACTTCACATGAGATATTAAGTTACTTACGTGA  700

seq1  TATAGCAACATATTACCAAAAAATTAGCCAAAGTTATTAATAGTGGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAACATATTACCAAAAAATTAGCCAAAGTTATTAATAGTGGATTG  750

seq1  TAATCTGAAGTCGACTTTATATGTTTGAAAATTACCATAAGAAAAGAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAAGTCGACTTTATATGTTTGAAAATTACCATAAGAAAAGAGTC  800

seq1  AGAGCAAGCAAGTAAGTCAGAAAGAGATGAGGGACCAGCTTGCCAGTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGCAAGTAAGTCAGAAAGAGATGAGGGACCAGCTTGCCAGTTCA  850

seq1  GAAAATCATTTTCTTCGGAAAATGGATTCTAAAGCTTATATGCAGATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCATTTTCTTCGGAAAATGGATTCTAAAGCTTATATGCAGATATA  900

seq1  ATTCTGTCATGTTTATAGAAAAAGAACATTGATAATAGGAGTAGATGAGA  950
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  ATTCTGTCATGTTTATAG-AAAAGAACATTGAT-ATAGGAGTAGATGAGA  948

seq1  ATGAAGGTTTTCAACTGAAAGGACCAGCAAATATCTTCAACAAAATTATA  1000
      ||| |||||| ||||||||||||||||| |||||| ||||| ||||||||
seq2  ATG-AGGTTTCCAACTGAAAGGACCAGC-AATATC-TCAAC-AAATTATA  994

seq1  GAAGAAAACTTCCCAAACCTCTAGAAA-GAGATGCCCATGAACATACAAG  1049
      ||||  |||||||  |||||||||||| ||||||| |||| |||||||  
seq2  GAAG-GAACTTCC--AACCTCTAGAAAGGAGATGCTCATG-ACATACA--  1038

seq1  AAGCCTACAGAACTCCAAATAGACTGGAGCAGAAA  1084
       |||||   ||||| | ||||||||||||| ||||
seq2  GAGCCTTACGAACT-CTAATAGACTGGAGCCGAAA  1072