BAC Information

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BAC

Clone NameB6Ng01-309I24
Chromosome5 (Build37)
Map Location 81,590,541 - 81,711,637
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309I24.bB6Ng01-309I24.g
ACCGA101773GA101774
length1,0821,130
definitionB6Ng01-309I24.b B6Ng01-309I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,590,541 - 81,591,628)(81,710,494 - 81,711,637)
sequence
gaattcttcctactcactctcctcccttcctttctctctctttctgcaca
tcccaattaaagtgtgtggtgggagatcccaggtaacactgtgaacatct
tagtttcatggtcattttcactgctgtaaatggagaatttaatagccact
atcttaaaatatttcaaaatatttaaaatagcaattgctttaaggttgat
ttcataaatgcaaaaaagttgagaaagtaacacttcggattcagtgtata
tgtgttttttttttcttttattgtcttgtgtggcatttttttttttactt
atatttatttattccttttggttcataaactcactgaaaagcaacatcat
taaatgtgtaaactatcaaatcaatataattttgagaattatcttatttc
atatttttagaactaatttctggggctgtttggtaacatgtaaatattag
atgataactttccttggagggttttatcatattatcatagtattaaatta
tgactccataaaataagtatcaaagtagaaattataaatatccaatcttc
ttgtccataaggaagtgctcttacgttttttcgtgtttatttttctgaat
tttttcttagtctattcatattctcagaaatgctaatgtattcaaatatt
caaaatatgtatatgaaaatatctctgtgtgcttgaaatgtacctaagat
actcatttaaaaatttgaatttgactttttgacaaaatgttctcttgttt
gtacatacttttgaaatttaccttaaaaagcttttttttcctattagtat
atatagactaattttcttcctatcttagtaatcatatacatatattcgat
ataatttaggatcgataatttaaaatagagcattatttttactagcatta
ttttaatttcacaacatctatgattattgtgtattctataggcaaagaat
ttactcttatcagatgttcatataggaataactgtattttactctttatg
tatctgataaatagccattataatttacatgatcctgacttacattcttt
acaaatcattccccttaactgttttcagtgag
gaattctgtcctcaaagggtaagtttgatagacatctgaggtacatttct
tgagtctgtaatgtaggctctataagcctcattcatctatgcttgccagc
tctactgtaggagccctttgtcccttaaacagaaaacaaggatgtctcac
aactgttactaattaccctctgctacatccagccgctcctgaaaaaaaaa
tctcagttctaactctatttgcagaatgcaaatctgcaaggctctatctt
tattttggagagagcatgtctaatgcagtgaagggaaggcatatatacag
tgagttatctaaattctaacatcctgcatattacagaccacgaggacact
ctcagaaagatattttgaggaaaatcttcccttccagaaagatttgacaa
aagcaaggcggttgagaaaaccaaaccaaaacaaacaaataaaaccaaga
tacagctcctctagagtcagtgagatttggattttcagttgttcatcctc
atgatttagcaaggcaacagaactaggaagataactgctgggctcagcta
ccaggtatgtatatggcttgcaggaaaatgcagttagagtttaataaaaa
gattccgtgcagttgctggaacaatcttggcaaccattagagtgggagtt
aagaagccatggagatgaattagtccagtagcctaatgtcaacaatgaag
tttttactttgttccatttccacttatgctgaagcacctgttgcaatata
tactgtgatacattcaaagggctgctgttctaaggtgattcattacaata
aggacgtgcctgttaaaacatcatacattgcatacaagtgaaggaaaaca
gagtatatataaatgtgtcagaactgaagttcatatatgttacatgagtt
aatgtaaaactagtgcacatggggcatagcacagacctatgaatatctag
aatttacaaaaaaggtaaatattatgatgatggaaaaaggcataaaacgg
caaatattgatatcattgggtttctgcatttaagtgctagctagactaga
tcttttgtaaatctgggacatatctgatgctcatgtagatgtgttcactg
tccgagctagataagccaactggaatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81590541_81591628
seq2: B6Ng01-309I24.b_45_1126

seq1  GAATTCTTCCTACTCACTCTCCTCCCTTCCTTTCTCTCTCTTTCTGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTACTCACTCTCCTCCCTTCCTTTCTCTCTCTTTCTGCACA  50

seq1  TCCCAATTAAAGTGTGTGGTGGGAGATCCCAGGTAACACTGTGAACATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTAAAGTGTGTGGTGGGAGATCCCAGGTAACACTGTGAACATCT  100

seq1  TAGTTTCATGGTCATTTTCACTGCTGTAAATGGAGAATTTAATAGCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATGGTCATTTTCACTGCTGTAAATGGAGAATTTAATAGCCACT  150

seq1  ATCTTAAAATATTTCAAAATATTTAAAATAGCAATTGCTTTAAGGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAATATTTCAAAATATTTAAAATAGCAATTGCTTTAAGGTTGAT  200

seq1  TTCATAAATGCAAAAAAGTTGAGAAAGTAACACTTCGGATTCAGTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATGCAAAAAAGTTGAGAAAGTAACACTTCGGATTCAGTGTATA  250

seq1  TGTGTTTTTTTTTTCTTTTATTGTCTTGTGTGGCATTTTTTTTTTTACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTTTTTTCTTTTATTGTCTTGTGTGGCATTTTTTTTTTTACTT  300

seq1  ATATTTATTTATTCCTTTTGGTTCATAAACTCACTGAAAAGCAACATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTTATTCCTTTTGGTTCATAAACTCACTGAAAAGCAACATCAT  350

seq1  TAAATGTGTAAACTATCAAATCAATATAATTTTGAGAATTATCTTATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGTAAACTATCAAATCAATATAATTTTGAGAATTATCTTATTTC  400

seq1  ATATTTTTAGAACTAATTTCTGGGGCTGTTTGGTAACATGTAAATATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAGAACTAATTTCTGGGGCTGTTTGGTAACATGTAAATATTAG  450

seq1  ATGATAACTTTCCTTGGAGGGTTTTATCATATTATCATAGTATTAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAACTTTCCTTGGAGGGTTTTATCATATTATCATAGTATTAAATTA  500

seq1  TGACTCCATAAAATAAGTATCAAAGTAGAAATTATAAATATCCAATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCATAAAATAAGTATCAAAGTAGAAATTATAAATATCCAATCTTC  550

seq1  TTGTCCATAAGGAAGTGCTCTTACGTTTTTTCGTGTTTATTTTTCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATAAGGAAGTGCTCTTACGTTTTTTCGTGTTTATTTTTCTGAAT  600

seq1  TTTTTCTTAGTCTATTCATATTCTCAGAAATGCTAATGTATTCAAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAGTCTATTCATATTCTCAGAAATGCTAATGTATTCAAATATT  650

seq1  CAAAATATGTATATGAAAATATCTCTGTGTGCTTGAAATGTACCTAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATGTATATGAAAATATCTCTGTGTGCTTGAAATGTACCTAAGAT  700

seq1  ACTCATTTAAAAATTTGAATTTGACTTTTTGACAAAATGTTCTCTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTAAAAATTTGAATTTGACTTTTTGACAAAATGTTCTCTTGTTT  750

seq1  GTACATACTTTTGAAATTTACCTTAAAAAGC-TTTTTTTCCTATTAGTAT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTACATACTTTTGAAATTTACCTTAAAAAGCTTTTTTTTCCTATTAGTAT  800

seq1  ATATAGACTAA-TTTCTTCCTATCTTAGTAATCATATACATATATTCGAT  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACTAATTTTCTTCCTATCTTAGTAATCATATACATATATTCGAT  850

seq1  ATAATTTAGGATCGATAATTTAAAATAGAGCATTATTTTTACTAGCATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGGATCGATAATTTAAAATAGAGCATTATTTTTACTAGCATTA  900

seq1  TTTTAATTTCACAAACATCTATGATTATTGTGTATTCTATAGGCAAAGAA  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTCAC-AACATCTATGATTATTGTGTATTCTATAGGCAAAGAA  949

seq1  TTTAC-CCTATCAAGATGTTCATATAAGAATAACTGTATTTTTACTCTTT  997
      ||||| | |||| ||||||||||||| ||||||||||| |||||||||||
seq2  TTTACTCTTATC-AGATGTTCATATAGGAATAACTGTA-TTTTACTCTTT  997

seq1  ATGTATCTGATAAAATAGCCATTATAAATTTAACAATGATCCCTGGACTT  1047
      ||||||||||| ||||||||||||| ||||||   |||||||   |||||
seq2  ATGTATCTGAT-AAATAGCCATTAT-AATTTA--CATGATCC--TGACTT  1041

seq1  ACA-TCTTTACAAATCAATTCCCCTAAACTGTTTTCAGTGAG  1088
      ||| |||||||||||| |||||||| ||||||||||||||||
seq2  ACATTCTTTACAAATC-ATTCCCCTTAACTGTTTTCAGTGAG  1082

seq1: chr5_81710494_81711637
seq2: B6Ng01-309I24.g_65_1194 (reverse)

seq1  CTATATTTCATGTTTGGCCTTTATCTAAATGCTCTGACAGGTTGAACACA  50
      ||||||| ||   |||||  |||||||   |||| |||||  ||||||||
seq2  CTATATTCCA--GTTGGC--TTATCTA---GCTCGGACAG--TGAACACA  41

seq1  ATTCTACATGAGCATCAGATATGT-CCAGATTTAACAAAGATCTAGTCTA  99
        |||||||||||||||||||||| |||||||||  ||||||||||||||
seq2  --TCTACATGAGCATCAGATATGTCCCAGATTTACAAAAGATCTAGTCTA  89

seq1  GCTTAGCACTTAAATGCAAGAAACCAAATGATATCAAATTATTTGCCCTT  149
      || |||||||||||||| ||||||| |||||||||||  |||||||| ||
seq2  GC-TAGCACTTAAATGC-AGAAACCCAATGATATCAA--TATTTGCCGTT  135

seq1  TTATTGCCTTTTTCCATCATCATAATATTTTACTTTTTTGTAAATTCTAG  199
      ||| ||||||||||||||||||||||||||  ||||||||||||||||||
seq2  TTA-TGCCTTTTTCCATCATCATAATATTTACCTTTTTTGTAAATTCTAG  184

seq1  ATATTCATAGGTCTGTGCTATGCCCCATGTGCACTAGTTTTACATTAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATAGGTCTGTGCTATGCCCCATGTGCACTAGTTTTACATTAACT  234

seq1  CATGTAACATATATGAACTTCAGTTCTGACACATTTATATATACTCTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACATATATGAACTTCAGTTCTGACACATTTATATATACTCTGTT  284

seq1  TTCCTTCACTTGTATGCAATGTATGATGTTTTAACAGGCACGTCCTTATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCACTTGTATGCAATGTATGATGTTTTAACAGGCACGTCCTTATT  334

seq1  GTAATGAATCACCTTAGAACAGCAGCCC-TTGAATGTATCACAGTATATA  398
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAATGAATCACCTTAGAACAGCAGCCCTTTGAATGTATCACAGTATATA  384

seq1  TTGCAACAGGTGCTTCAGCATAAGTGGAAATGGAACAAAGTAAAAACTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACAGGTGCTTCAGCATAAGTGGAAATGGAACAAAGTAAAAACTTC  434

seq1  ATTGTTGACATTAGGCTACTGGACTAATTCATCTCCATGGCTTCTTAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGACATTAGGCTACTGGACTAATTCATCTCCATGGCTTCTTAACT  484

seq1  CCCACTCTAATGGTTGCCAAGATTGTTCCAGCAACTGCACGGAATCTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTAATGGTTGCCAAGATTGTTCCAGCAACTGCACGGAATCTTTT  534

seq1  TATTAAACTCTAACTGCATTTTCCTGCAAGCCATATACATACCTGGTAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACTCTAACTGCATTTTCCTGCAAGCCATATACATACCTGGTAGC  584

seq1  TGAGCCCAGCAGTTATCTTCCTAGTTCTGTTGCCTTGCTAAATCATGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGCAGTTATCTTCCTAGTTCTGTTGCCTTGCTAAATCATGAGG  634

seq1  ATGAACAACTGAAAATCCAAATCTCACTGACTCTAGAGGAGCTGTATCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAACTGAAAATCCAAATCTCACTGACTCTAGAGGAGCTGTATCTT  684

seq1  GGTTTTATTTGTTTGTTTTGGTTTGGTTTTCTCAACCGCCTTGCTTTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTGTTTGTTTTGGTTTGGTTTTCTCAACCGCCTTGCTTTTGT  734

seq1  CAAATCTTTCTGGAAGGGAAGATTTTCCTCAAAATATCTTTCTGAGAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTTCTGGAAGGGAAGATTTTCCTCAAAATATCTTTCTGAGAGTG  784

seq1  TCCTCGTGGTCTGTAATATGCAGGATGTTAGAATTTAGATAACTCACTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGTGGTCTGTAATATGCAGGATGTTAGAATTTAGATAACTCACTGT  834

seq1  ATATATGCCTTCCCTTCACTGCATTAGACATGCTCTCTCCAAAATAAAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCTTCCCTTCACTGCATTAGACATGCTCTCTCCAAAATAAAGA  884

seq1  TAGAGCCTTGCAGATTTGCATTCTGCAAATAGAGTTAGAACTGAGATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTGCAGATTTGCATTCTGCAAATAGAGTTAGAACTGAGATTTT  934

seq1  TTTTTCAGGAGCGGCTGGATGTAGCAGAGGGTAATTAGTAACAGTTGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGGAGCGGCTGGATGTAGCAGAGGGTAATTAGTAACAGTTGTGA  984

seq1  GACATCCTTGTTTTCTGTTTAAGGGACAAAGGGCTCCTACAGTAGAGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTTGTTTTCTGTTTAAGGGACAAAGGGCTCCTACAGTAGAGCTG  1034

seq1  GCAAGCATAGATGAATGAGGCTTATAGAGCCTACATTACAGACTCAAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATAGATGAATGAGGCTTATAGAGCCTACATTACAGACTCAAGAA  1084

seq1  ATGTACCTCAGATGTCTATCAAACTTACCCTTTGAGGACAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTCAGATGTCTATCAAACTTACCCTTTGAGGACAGAATTC  1130