BAC Information

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BAC

Clone NameB6Ng01-309J06
Chromosome5 (Build37)
Map Location 18,707,549 - 18,763,018
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309J06.bB6Ng01-309J06.g
ACCGA101785GA101786
length1,144235
definitionB6Ng01-309J06.b B6Ng01-309J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,761,870 - 18,763,018)(18,707,549 - 18,707,784)
sequence
gaattccaatacatgttcactcttacaatcgacactgttatttcttcctg
aacttacaagacaatagaactgatatgagtgattttcatctgcattctga
aatgacatgcttccatttcatctaatatggaatattttacctctagtaat
acctgctattaatgattttggatgtttgtttttattatttgtattttagg
aaccagaagaaaagttacagacagatgtacaaatgaacagatatacaaaa
agactggtgtacataaagtcatataaaaataaagttcaaaagaataactt
ttattggttgatttcattatatgacaatttcatacttgtttataattttt
aaggataaaatcatttaggttacttgtcaagtggagtgagatgatgcagc
acagaaacttttctctcttgcttttaaagtacatgcgatgcagaattaaa
gtcctgcaaagcaccgcccatagaatctgaccacagcagtgcagttctcc
ctgacatagtcagtcctaatctgaagaagatatgaaatgttttaaaggaa
gttcagaccactattctgaaagccatatatttaaaaacacttacagcaca
gattaaaacagcttttatggctacatagttagggaacgaagacaaaacaa
agatacattttcatttctaattatttggcatatgcctttatacatcccca
gtctgttggttgctaatttctgccttttatacccggtgcaaatactcctt
tatttctttctattgaatccctgtgctttctctaaaattcaaataaatgg
gaatattttactgctgtatggtctggccccatttatccccatttcaattg
actaggcagctgtggggaaattcagtaggaagagaatgatgtcaaagtaa
acaaaacaagctggaggaactcatcccactgtagaaaacactgggataat
ttctgaaatagcaggataatgataatattagctagtgatgacatacaaat
gagtgtttcatgacacatagcattagtatagaaatacttaaacctacatt
catttctgccttatgtctgccactcaacctgtcctagctattatggagtt
gtgtcttgtcatagccaaaattttggttaatcttttatttagat

aaattaaaataaatttgaaaaaggtatgcatgggggaggggcttggaggg
aggaaagggaagatatttttaaattaaattataatctcaaatatgtttta
aaaagattgtatttatgaagaaatatgttattgaattgtttgataactat
ttctgatatcttttgattattgatattgaggcttagttgctaactccgaa
acaaaatgcattccagctactcagaaacctgttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18761870_18763018
seq2: B6Ng01-309J06.b_47_1190 (reverse)

seq1  ATCTAAAATAAAAAAGAATAA-CAAAATTTTTGCTATGACAA-ACACAAC  48
      ||||||   | |||||| ||| ||||||||| |||||||||| |||||||
seq2  ATCTAA---ATAAAAGATTAACCAAAATTTTGGCTATGACAAGACACAAC  47

seq1  TCATTATTAGGCTAAGACAGTTTGAGTGGCAGACATAAGGCAGAAATTGA  98
      ||  || || |||| ||||| ||||||||||||||||||||||||| |||
seq2  TCCATAATA-GCTAGGACAGGTTGAGTGGCAGACATAAGGCAGAAA-TGA  95

seq1  ATGTAGTTTTAAGTATTTCTATACTATTGCCTATGTTGTCATGAAACACT  148
      |||||| ||||||||||||||||||| || ||||| ||||||||||||||
seq2  ATGTAGGTTTAAGTATTTCTATACTAATG-CTATG-TGTCATGAAACACT  143

seq1  CATTTGTATGTCATCACTAGCTAATATTATCATTATCCTGCTATTTCAG-  197
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATTTGTATGTCATCACTAGCTAATATTATCATTATCCTGCTATTTCAGA  193

seq1  AATTATCCAGTTGTTTTCTACAGTGGGATGAGTTCCTCCAGCTTGTTTTG  247
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AATTATCCCAGTGTTTTCTACAGTGGGATGAGTTCCTCCAGCTTGTTTTG  243

seq1  TTTACTTTGACATCATTCTCTTCCTACTGAATTTCCCCACAGCTGCCTAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTGACATCATTCTCTTCCTACTGAATTTCCCCACAGCTGCCTAG  293

seq1  TCAATTGAAATGGGGATAAATGGGGCCAGACCATACAGCAGTAAAATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGAAATGGGGATAAATGGGGCCAGACCATACAGCAGTAAAATATT  343

seq1  CCCATTTATTTGAATTTTAGAGAAAGCACAGGGATTCAAATAGAAAGAAA  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCATTTATTTGAATTTTAGAGAAAGCACAGGGATTC-AATAGAAAGAAA  392

seq1  TAAAGGAGTATTTGCACCGGGTATAAAAGGCAGAAATTAGCAACCAACAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGTATTTGCACCGGGTATAAAAGGCAGAAATTAGCAACCAACAG  442

seq1  ACTGGGGATGTATAAAGGCATATGCCAAATAATTAGAAATGAAAATGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGATGTATAAAGGCATATGCCAAATAATTAGAAATGAAAATGTAT  492

seq1  CTTTGTTTTGTCTTCGTTCCCTAACTATGTAGCCATAAAAGCTGTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTGTCTTCGTTCCCTAACTATGTAGCCATAAAAGCTGTTTTAA  542

seq1  TCTGTGCTGTAAGTGTTTTTAAATATATGGCTTTCAGAATAGTGGTCTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGTAAGTGTTTTTAAATATATGGCTTTCAGAATAGTGGTCTGA  592

seq1  ACTTCCTTTAAAACATTTCATATCTTCTTCAGATTAGGACTGACTATGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTAAAACATTTCATATCTTCTTCAGATTAGGACTGACTATGTC  642

seq1  AGGGAGAACTGCACTGCTGTGGTCAGATTCTATGGGCGGTGCTTTGCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAACTGCACTGCTGTGGTCAGATTCTATGGGCGGTGCTTTGCAGG  692

seq1  ACTTTAATTCTGCATCGCATGTACTTTAAAAGCAAGAGAGAAAAGTTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATTCTGCATCGCATGTACTTTAAAAGCAAGAGAGAAAAGTTTCT  742

seq1  GTGCTGCATCATCTCACTCCACTTGACAAGTAACCTAAATGATTTTATCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCATCATCTCACTCCACTTGACAAGTAACCTAAATGATTTTATCC  792

seq1  TTAAAAATTATAAACAAGTATGAAATTGTCATATAATGAAATCAACCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTATAAACAAGTATGAAATTGTCATATAATGAAATCAACCAAT  842

seq1  AAAAGTTATTCTTTTGAACTTTATTTTTATATGACTTTATGTACACCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATTCTTTTGAACTTTATTTTTATATGACTTTATGTACACCAGT  892

seq1  CTTTTTGTATATCTGTTCATTTGTACATCTGTCTGTAACTTTTCTTCTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTATATCTGTTCATTTGTACATCTGTCTGTAACTTTTCTTCTGG  942

seq1  TTCCTAAAATACAAATAATAAAAACAAACATCCAAAATCATTAATAGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAAATACAAATAATAAAAACAAACATCCAAAATCATTAATAGCAG  992

seq1  GTATTACTAGAGGTAAAATATTCCATATTAGATGAAATGGAAGCATGTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTAGAGGTAAAATATTCCATATTAGATGAAATGGAAGCATGTCA  1042

seq1  TTTCAGAATGCAGATGAAAATCACTCATATCAGTTCTATTGTCTTGTAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATGCAGATGAAAATCACTCATATCAGTTCTATTGTCTTGTAAG  1092

seq1  TTCAGGAAGAAATAACAGTGTCGATTGTAAGAGTGAACATGTATTGGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGAAATAACAGTGTCGATTGTAAGAGTGAACATGTATTGGAAT  1142

seq1  TC  1149
      ||
seq2  TC  1144


seq1: chr5_18707549_18707784
seq2: B6Ng01-309J06.g_71_305

seq1  AAATTAAAATAAATTTGAAAAAGGTATGCATGGGGGAGGGGCTTGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATAAATTTGAAAAAGGTATGCATGGGGGAGGGGCTTGGAGGG  50

seq1  AGGAAAGGGAAGATATTTTTAAATTAAATTATAATCTCAAATATGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGAAGATATTTTTAAATTAAATTATAATCTCAAATATGTTTTA  100

seq1  AAAAGATTGTATTTATGAAGAAATATGTTATTGAATTGTTTGATAACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTGTATTTATGAAGAAATATGTTATTGAATTGTTTGATAACTAT  150

seq1  TTCTGATATCTTTTGATTATTGATATTGAGGCATAGTTGCTAACTCTAGA  200
      |||||||||||||||||||||||||||||||| |||||||||||||  ||
seq2  TTCTGATATCTTTTGATTATTGATATTGAGGCTTAGTTGCTAACTC-CGA  199

seq1  AACTAAATGCATTCTAGCTACTCATTAAGCTGTTAA  236
      ||| |||||||||| |||||||||  || |||||||
seq2  AACAAAATGCATTCCAGCTACTCAGAAACCTGTTAA  235


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