BAC Information

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BAC

Clone NameB6Ng01-309L01
Chromosome5 (Build37)
Map Location 99,236,923 - 99,393,482
singlet/doubletdoublet
Overlap geneBmp3, Prkg2
Upstream geneAntxr2, EG435856, LOC666315, LOC666320, LOC666326, Prdm8, Fgf5, 1700007G11Rik
Downstream geneLOC100041680, Rasgef1b, A930011G23Rik, LOC100040738, LOC666364, LOC100040763, LOC100040774, Hnrpd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L01.bB6Ng01-309L01.g
ACCGA101868GA101869
length1,0861,090
definitionB6Ng01-309L01.b B6Ng01-309L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,392,397 - 99,393,482)(99,236,923 - 99,238,000)
sequence
gaattcttggccacaagctgctcttagtgaaaaaacatccaagcaagtgt
ttaaatgaagatgggcccatgctggacccatgcccaaagtcctaaacacc
atggcagattctttttaaaagaatctcctgtcaattcaggacatgaagaa
cccctggaggtgaagttccaggaaagacaagctcatgctaagtatattaa
taataaatgtctgaggaaaagaaactactaagtaccaggggcatagcggc
caagagagtgaagagcacaagcagatttctaagctccttggggatctcaa
aagtgatctaagaagtttggagaaagatccaacagactgtctgctgagaa
aaataaggctataataactaattaaatatacaatgggagttttcatatat
catggagtagcttgcgttggaccacccttgtgtagctaatttatgtatac
actgtgaaggcactggaaagcaatcaaaggaaataaatatctaagcctcg
ataaagggcatcctgctagatgagacccacattttaaaatggctgcatag
gtgtttattgagaatgtgcctcaacatataaggaattaggattgaaccta
acttaacatcttacctaaagagcaatattgaacagtttttcattagattg
agaataagaagagattatctgatcttacactgttaccatgacaataggtt
tcagcaaatgaaataaaccaagaaggggcaacaaaaggccctaagtcaga
aaataaaataaatcagctctttttatttgatcatagcatggatttttatt
tattatttattatttttattattatttatttaatttatttgttatttaga
gaagtctaaaaacctcaagaataatttagaatgtgtaagtgaaatattgt
tggcacaaaatcaataaaagtaaaattttctattttacatagtaatgaac
aaaaagttctaaatgaaataaatgacatttattagcttcaaattataaat
attgtatttaaatagtatcactattatgaaaaattaattaaaaatataaa
ggatttataactcttcacttgaaattcatgaatttt
gaattctcatttctgtaattatggaaactctgctaagctgatgggcagat
aagaatcttcaggacaatgaggagatctgggggcagggcaaaaagcacct
gtaggtcaacagagtaggaggtggtccagacagcactacgcttaggttct
agggctccacggcagcaaggcctttgataatctgatgaagcagaaaacag
aaggagtgccctgtgaagcgtcttccattaatcattccccaggacaaccg
atgaaggcaagcaagcgtgcagtaaaaccttacccgacacacggctggcc
tttctatgttgtcagatctccgaggatcatcggatttgaaggaagcagta
catagtaacttcaagggagcatctaccccttcccttgtgaagtttgcatg
gtggtcagatgcacttctcagacaggagaagggatactgttcctctcagg
aaatttaccagcttggaataaaaatctaaggaatcttcttttcttttatt
gctcttggctcttgctgctgttattgtgcttgtgtgttatccctcacctc
atgttacatttcccaaaagagtatagagaaagcaggcatgcagtgcagtt
ggagtacacattctatctgtgctcattatggaagctgatctgaaggcttt
tagttgctatcctgatcttgtcagtgtacaagtatacaaaaagtgacaat
ttaggctcctattctctggttattcaatttctacatgattatgttaatca
ccacttttttagacccacatggaatcatggtgactagggtggtatatttg
gaaatacatctagagaaagtattttcttaaagggcacttttataaagtgc
tagtctgttttgtttcgttttgtttttcctacatttctggaggaaaaccc
tctgtcatttaaaaaaaaaattaaaaaggttattaaaattgacacttcag
cttttagccatgagactcaagtagaatattataggactcactttatccta
gctcctcacgttattctaacagttaacaacgttactctctattcaccatg
agaataagtggtctactttctcagatttttagcgttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_99392397_99393482
seq2: B6Ng01-309L01.b_47_1132 (reverse)

seq1  AAAATTTAATGATTTTC-AGTGAAGAGTTATTATATCTTTATATTTTTTA  49
       ||| || |||| |||| ||||||||||||| |   |||||||||||| |
seq2  -AAAATTCATGAATTTCAAGTGAAGAGTTATAAATCCTTTATATTTTTAA  49

seq1  TT-ATTTTTCATAATAGTGATACTATTTTAATACAATATTTTATAATTTT  98
      || ||||||||||||||||||||||||| ||||||||| ||||||| |||
seq2  TTAATTTTTCATAATAGTGATACTATTTAAATACAATA-TTTATAA-TTT  97

seq1  GAAGCT-ATAAATGTCATTTTATTTCATTTAGAACTTTTTG-TCATTACT  146
      |||||| |||||||||| ||||||||||||||||||||||| ||||||||
seq2  GAAGCTAATAAATGTCA-TTTATTTCATTTAGAACTTTTTGTTCATTACT  146

seq1  ATGTAAAATAGAAAATTTTAC-TTTATTGATTTTGTGCCAACAATATTTC  195
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTAAAATAGAAAATTTTACTTTTATTGATTTTGTGCCAACAATATTTC  196

seq1  ACTTACACATTCTAAATTATTCTTTGAGGTTTTTAGACTTCTCTAAATAA  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTACACATTCTAAATTATTC-TTGAGGTTTTTAGACTTCTCTAAATAA  245

seq1  CAAATAAATTAAATAAATAATAATAAAAATAATAAATAATAAATAAAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATTAAATAAATAATAATAAAAATAATAAATAATAAATAAAAAT  295

seq1  CCATGCTATGATCAAATAAAAAGAGCTGATTTATTTTATTTTCTGACTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTATGATCAAATAAAAAGAGCTGATTTATTTTATTTTCTGACTTA  345

seq1  GGGCCTTTTGTTGCCCCTTCTTGGTTTATTTCATTTGCTGAAACCTATTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTTTGTTGCCCCTTCTTGGTTTATTTCATTTGCTGAAACCTATTG  395

seq1  TCATGGTAACAGTGTAAGATCAGATAATCTCTTCTTATTCTCAATCTAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAACAGTGTAAGATCAGATAATCTCTTCTTATTCTCAATCTAAT  445

seq1  GAAAAACTGTTCAATATTGCTCTTTAGGTAAGATGTTAAGTTAGGTTCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTGTTCAATATTGCTCTTTAGGTAAGATGTTAAGTTAGGTTCAA  495

seq1  TCCTAATTCCTTATATGTTGAGGCACATTCTCAATAAACACCTATGCAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTCCTTATATGTTGAGGCACATTCTCAATAAACACCTATGCAGC  545

seq1  CATTTTAAAATGTGGGTCTCATCTAGCAGGATGCCCTTTATCGAGGCTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAATGTGGGTCTCATCTAGCAGGATGCCCTTTATCGAGGCTTA  595

seq1  GATATTTATTTCCTTTGATTGCTTTCCAGTGCCTTCACAGTGTATACATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTATTTCCTTTGATTGCTTTCCAGTGCCTTCACAGTGTATACATA  645

seq1  AATTAGCTACACAAGGGTGGTCCAACGCAAGCTACTCCATGATATATGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTACACAAGGGTGGTCCAACGCAAGCTACTCCATGATATATGAA  695

seq1  AACTCCCATTGTATATTTAATTAGTTATTATAGCCTTATTTTTCTCAGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCATTGTATATTTAATTAGTTATTATAGCCTTATTTTTCTCAGCA  745

seq1  GACAGTCTGTTGGATCTTTCTCCAAACTTCTTAGATCACTTTTGAGATCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTCTGTTGGATCTTTCTCCAAACTTCTTAGATCACTTTTGAGATCC  795

seq1  CCAAGGAGCTTAGAAATCTGCTTGTGCTCTTCACTCTCTTGGCCGCTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGCTTAGAAATCTGCTTGTGCTCTTCACTCTCTTGGCCGCTATG  845

seq1  CCCCTGGTACTTAGTAGTTTCTTTTCCTCAGACATTTATTATTAATATAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGTACTTAGTAGTTTCTTTTCCTCAGACATTTATTATTAATATAC  895

seq1  TTAGCATGAGCTTGTCTTTCCTGGAACTTCACCTCCAGGGGTTCTTCATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATGAGCTTGTCTTTCCTGGAACTTCACCTCCAGGGGTTCTTCATG  945

seq1  TCCTGAATTGACAGGAGATTCTTTTAAAAAGAATCTGCCATGGTGTTTAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAATTGACAGGAGATTCTTTTAAAAAGAATCTGCCATGGTGTTTAG  995

seq1  GACTTTGGGCATGGGTCCAGCATGGGCCCATCTTCATTTAAACACTTGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGGCATGGGTCCAGCATGGGCCCATCTTCATTTAAACACTTGCT  1045

seq1  TGGATGTTTTTTCACTAAGAGCAGCTTGTGGCCAAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTTTTCACTAAGAGCAGCTTGTGGCCAAGAATTC  1086

seq1: chr5_99236923_99238000
seq2: B6Ng01-309L01.g_65_1154

seq1  GAATTCTCATTTCTGTAATTATGGAAACTCTGCTAAGCTGATGGGCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTCTGTAATTATGGAAACTCTGCTAAGCTGATGGGCAGAT  50

seq1  AAGAATCTTCAGGACAATGAGGAGATCTGGGGGCAGGGCAAAAAGCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTCAGGACAATGAGGAGATCTGGGGGCAGGGCAAAAAGCACCT  100

seq1  GTAGGTCAACAGAGTAGGAGGTGGTCCAGACAGCACTACGCTTAGGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCAACAGAGTAGGAGGTGGTCCAGACAGCACTACGCTTAGGTTCT  150

seq1  AGGGCTCCACGGCAGCAAGGCCTTTGATAATCTGATGAAGCAGAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCCACGGCAGCAAGGCCTTTGATAATCTGATGAAGCAGAAAACAG  200

seq1  AAGGAGTGCCCTGTGAAGCGTCTTCCATTAATCATTCCCCAGGACAACCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGCCCTGTGAAGCGTCTTCCATTAATCATTCCCCAGGACAACCG  250

seq1  ATGAAGGCAAGCAAGCGTGCAGTAAAACCTTACCCGACACACGGCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCAAGCAAGCGTGCAGTAAAACCTTACCCGACACACGGCTGGCC  300

seq1  TTTCTATGTTGTCAGATCTCCGAGGATCATCGGATTTGAAGGAAGCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTTGTCAGATCTCCGAGGATCATCGGATTTGAAGGAAGCAGTA  350

seq1  CATAGTAACTTCAAGGGAGCATCTACCCCTTCCCTTGTGAAGTTTGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAACTTCAAGGGAGCATCTACCCCTTCCCTTGTGAAGTTTGCATG  400

seq1  GTGGTCAGATGCACTTCTCAGACAGGAGAAGGGATACTGTTCCTCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGATGCACTTCTCAGACAGGAGAAGGGATACTGTTCCTCTCAGG  450

seq1  AAATTTACCAGCTTGGAATAAAAATCTAAGGAATCTTCTTTTCTTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCAGCTTGGAATAAAAATCTAAGGAATCTTCTTTTCTTTTATT  500

seq1  GCTCTTGGCTCTTGCTGCTGTTATTGTGCTTGTGTGTTATCCCTCACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGCTCTTGCTGCTGTTATTGTGCTTGTGTGTTATCCCTCACCTC  550

seq1  ATGTTACATTTCCCAAAAGAGTATAGAGAAAGCAGGCATGCAGTGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACATTTCCCAAAAGAGTATAGAGAAAGCAGGCATGCAGTGCAGTT  600

seq1  GGAGTACACATTCTATCTGTGCTCATTATGGAAGCTGATCTGAAGGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTACACATTCTATCTGTGCTCATTATGGAAGCTGATCTGAAGGCTTT  650

seq1  TAGTTGCTATCCTGATCTTGTCAGTGTACAAGTATACAAAAAGTGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTATCCTGATCTTGTCAGTGTACAAGTATACAAAAAGTGACAAT  700

seq1  TTAGGCTCCTATTCTCTGGTTATTCAATTTCTACATGATTATGTTAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTCCTATTCTCTGGTTATTCAATTTCTACATGATTATGTTAATCA  750

seq1  CCAC-TTTTTAGACCCACATGGAATCATGGTGACTAGGGTGGTATA-TTG  798
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCACTTTTTTAGACCCACATGGAATCATGGTGACTAGGGTGGTATATTTG  800

seq1  GAAATACATCTAGAG-AAGTATTTTCTT-AAGGGCAC-TTTATAAAGTGC  845
      ||||||||||||||| |||||||||||| |||||||| ||||||||||||
seq2  GAAATACATCTAGAGAAAGTATTTTCTTAAAGGGCACTTTTATAAAGTGC  850

seq1  TAGTCTGTTTTGTTTCGTTTTG-TTTTCCTACATTTCTGGAGGAAAACCC  894
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAGTCTGTTTTGTTTCGTTTTGTTTTTCCTACATTTCTGGAGGAAAACCC  900

seq1  TCTGTCATTT-AAAAAAAAATTAAAAAGGT--ATAAAATTGAACACTTCA  941
      |||||||||| |||||||||||||||||||   |||||||| ||||||||
seq2  TCTGTCATTTAAAAAAAAAATTAAAAAGGTTATTAAAATTG-ACACTTCA  949

seq1  GC-TTTAGCCATGAGACTCAAGTAGAATATTATA-GACTCATTTAATCTT  989
      || ||||||||||||||||||||||||||||||| |||||| || ||| |
seq2  GCTTTTAGCCATGAGACTCAAGTAGAATATTATAGGACTCACTTTATCCT  999

seq1  AGCT-CTCACGTTA-TCTAACAGTTAACAACCGTACTCTCTAATTTCACC  1037
      |||| ||||||||| ||||||||||||||||  |||||||||  ||||||
seq2  AGCTCCTCACGTTATTCTAACAGTTAACAACGTTACTCTCTA--TTCACC  1047

seq1  ATGAGA--TAGT-GTCTACATTTCCTCAGATTTTTAG-TTTCTTT  1078
      ||||||   ||| ||||||  || |||||||||||||  ||||||
seq2  ATGAGAATAAGTGGTCTAC--TTTCTCAGATTTTTAGCGTTCTTT  1090