BAC Information

Click to search

BAC

Clone NameB6Ng01-309L07
Chromosome5 (Build37)
Map Location 19,804,398 - 19,944,846
singlet/doubletdoublet
Overlap geneMagi2
Upstream genenone
Downstream geneLOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309L07.bB6Ng01-309L07.g
ACCGA101880GA101881
length1,1211,120
definitionB6Ng01-309L07.b B6Ng01-309L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,943,726 - 19,944,846)(19,804,398 - 19,805,532)
sequence
gaattcctgctatgatggtttgaatgaggatgtcccccaatcaaaccacc
tagttagtggaactgtttgggaaggattaggatgtatggccatagggtag
gtgtggccttgttggagaaaatgtgtcactgggggcagagtttgaggttt
cacagctcataatggacctagtttttctgtgcctttgcatgcaacttact
gatcagatatgcctaagggcttgttattggcaactgctataatgacatgc
ctgcctgcctgttaccatggtccctaccatgatggtcagggactaacatt
ctgaaactacaaacaagcatctggttaaatgtatccttccataagttgtc
ttgatcttggtattttaccccagcaatcgatcagtaagtaagatgcccac
ccaacaaaatggttcaagacaacagtgttgttgagcaacttcagactgcc
ctatcatcttaggaaggactcatttatcaaagcacagacagtatatttat
ggcaagagtacctttctacacagagaagaggttgtgagtgacaacaccca
agagcacaggatgctatgtagctgggaaaatatcttaatttctgtaattt
tgcttttctcatctaccaatggaggtatctaggaaaattacaaataattt
gtgtagctatgcaagatgatgaaatataatgctccagtcttaaattatgg
tttgtacagtgactacaccccagagaggatgaagaacagctctgcgtggg
tagacatgacaaccactgtcagctgggcaataaggagtgtctgatgaggg
atgctgtgttggtaatacagatttgtggcttgatgctataaaggagttac
tttactttggtggttatctccacccccaccccaccccctaaggtctgtag
ttttcatgtaatcatgagaaagacatcacacaaatcccagtttaaggaat
gctccaaaaaactgggccagcattataaaaagttatcatcaagttcatca
aatcagaaagtctaaacttccaagctgtgtggaatctaaagatacagatg
actacagatgaaatggtgatttctgggatgaatcctggatggaagtagaa
aacttggtaattcaaaaacca

gaattccacacgtgaagcctcttccacacaatccttccaccacatcctca
ctggtgctttccctgtcgcactggctgttaaaggaagcactaaaatctct
catagattactctaattaacttctctcaccctgtttttgattatgaaatc
aagatgttggacatattaaaatgcataattgtggttattttcatccatct
gttaactacaaaatattcctaattgcaagtaactctctttgttttaaagt
cttgtctgttttctactattagttttcttgtgtttttttaatattatagc
ttacatttaatctgccttaacataaaaagataaacagcatatattggatc
atctttttaattcatctttatagtattggccttttcactgacatatccag
ctcctctacctttaatataattagtgaggtgtgggaacagacccactgtt
tcgttattctttctgtttcccactatgtttccagttctttctctcctcca
ctctggtgcgctcacgttttgactcctctgttgaattgttagctctacaa
gtcaacacttaatgttggtgcttagtgtgctgtcttcaggataatattta
cacatagtcattataatctacagttgctgctgtaactacacataaagtgt
aagaacctccacatatagagattcactttctatgtcctatgtttcctccc
atatatccatgaacacttaaagtctatccattcctattttttatatttat
atcgtacttatattcgtgactttgactactttcacagtttctacattttc
tcttcagtgttaaccttagggggtgtttgatttatcctgctttgagttaa
gcgccttcttgagtcttattttttaaaccatttagaggtattctttcttt
ccttgatttctagaaattcaccagcatgcactagattagtttatatttct
tgcaggccattgggggttctgtcattcactagagtcatttttttattcat
atgatgatacttaatgcattgagctgttcaaagtctttgtactcatttca
tagacacatcttgagttcattcatatactctagcatatattctgaaattt
tcctccgtgcaaggttattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_19943726_19944846
seq2: B6Ng01-309L07.b_53_1166 (reverse)

seq1  TGTTTTTTGTATTTTTACCAAATTTTCTACTTTCCCATCCCAGGATTCCA  50
      || |||||| |   ||||||| ||||||||||  |||| |||||||| ||
seq2  TGGTTTTTGAA---TTACCAAGTTTTCTACTT--CCAT-CCAGGATT-CA  43

seq1  TCCAAGAAATCA-CATTTCATCTGTAGTCATCCTGTATCTTTAGATTCCA  99
      ||| |||||||| |||||||||||||||||| ||||||||||||||||||
seq2  TCCCAGAAATCACCATTTCATCTGTAGTCAT-CTGTATCTTTAGATTCCA  92

seq1  CACAGCCTTGGAAGTTTAAGACTTTCTGATTTTGATGACCTTGATGATAA  149
      ||||| ||||||||||| ||||||||||| |||||||| |||||||||||
seq2  CACAG-CTTGGAAGTTT-AGACTTTCTGA-TTTGATGAACTTGATGATAA  139

seq1  C-TTTTATAATGCTGG-CCAGTTTTTTGGAGCATTCCTT-AACTGGGATT  196
      | |||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  CTTTTTATAATGCTGGCCCAGTTTTTTGGAGCATTCCTTAAACTGGGATT  189

seq1  TGTGTGATGTCTTTCTCATGATTACATGAAAACTACAGACCTTAGGGGGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGTCTTTCTCATGATTACATGAAAACTACAGACCTTAGGGGGT  239

seq1  GGGGTGGGGGTGGAGATAACCACCAAAGTAAAGTAACTCCTTTATAGCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGGTGGAGATAACCACCAAAGTAAAGTAACTCCTTTATAGCAT  289

seq1  CAAGCCACAAATCTGTATTACCAACACAGCATCCCTCATCAGACACTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCACAAATCTGTATTACCAACACAGCATCCCTCATCAGACACTCCT  339

seq1  TATTGCCCAGCTGACAGTGGTTGTCATGTCTACCCACGCAGAGCTGTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCCAGCTGACAGTGGTTGTCATGTCTACCCACGCAGAGCTGTTCT  389

seq1  TCATCCTCTCTGGGGTGTAGTCACTGTACAAACCATAATTTAAGACTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTCTCTGGGGTGTAGTCACTGTACAAACCATAATTTAAGACTGGA  439

seq1  GCATTATATTTCATCATCTTGCATAGCTACACAAATTATTTGTAATTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATATTTCATCATCTTGCATAGCTACACAAATTATTTGTAATTTTC  489

seq1  CTAGATACCTCCATTGGTAGATGAGAAAAGCAAAATTACAGAAATTAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATACCTCCATTGGTAGATGAGAAAAGCAAAATTACAGAAATTAAGA  539

seq1  TATTTTCCCAGCTACATAGCATCCTGTGCTCTTGGGTGTTGTCACTCACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCAGCTACATAGCATCCTGTGCTCTTGGGTGTTGTCACTCACA  589

seq1  ACCTCTTCTCTGTGTAGAAAGGTACTCTTGCCATAAATATACTGTCTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCTCTGTGTAGAAAGGTACTCTTGCCATAAATATACTGTCTGTG  639

seq1  CTTTGATAAATGAGTCCTTCCTAAGATGATAGGGCAGTCTGAAGTTGCTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAAATGAGTCCTTCCTAAGATGATAGGGCAGTCTGAAGTTGCTC  689

seq1  AACAACACTGTTGTCTTGAACCATTTTGTTGGGTGGGCATCTTACTTACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACACTGTTGTCTTGAACCATTTTGTTGGGTGGGCATCTTACTTACT  739

seq1  GATCGATTGCTGGGGTAAAATACCAAGATCAAGACAACTTATGGAAGGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGATTGCTGGGGTAAAATACCAAGATCAAGACAACTTATGGAAGGAT  789

seq1  ACATTTAACCAGATGCTTGTTTGTAGTTTCAGAATGTTAGTCCCTGACCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAACCAGATGCTTGTTTGTAGTTTCAGAATGTTAGTCCCTGACCA  839

seq1  TCATGGTAGGGACCATGGTAACAGGCAGGCAGGCATGTCATTATAGCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAGGGACCATGGTAACAGGCAGGCAGGCATGTCATTATAGCAGT  889

seq1  TGCCAATAACAAGCCCTTAGGCATATCTGATCAGTAAGTTGCATGCAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATAACAAGCCCTTAGGCATATCTGATCAGTAAGTTGCATGCAAAG  939

seq1  GCACAGAAAAACTAGGTCCATTATGAGCTGTGAAACCTCAAACTCTGCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAAAACTAGGTCCATTATGAGCTGTGAAACCTCAAACTCTGCCC  989

seq1  CCAGTGACACATTTTCTCCAACAAGGCCACACCTACCCTATGGCCATACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACACATTTTCTCCAACAAGGCCACACCTACCCTATGGCCATACA  1039

seq1  TCCTAATCCTTCCCAAACAGTTCCACTAACTAGGTGGTTTGATTGGGGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCCTTCCCAAACAGTTCCACTAACTAGGTGGTTTGATTGGGGGA  1089

seq1  CATCCTCATTCAAACCATCATAGCA  1121
      |||||||||||||||||||||||||
seq2  CATCCTCATTCAAACCATCATAGCA  1114


seq1: chr5_19804398_19805532
seq2: B6Ng01-309L07.g_69_1188

seq1  GAATTCCACACGTGAAGCCTCTTCCACACAATCCTTCCACCACATCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACGTGAAGCCTCTTCCACACAATCCTTCCACCACATCCTCA  50

seq1  CTGGTGCTTTCCCTGTCGCACTGGCTGTTAAAGGAAGCACTAAAATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTTTCCCTGTCGCACTGGCTGTTAAAGGAAGCACTAAAATCTCT  100

seq1  CATAGATTACTCTAATTAACTTCTCTCACCCTGTTTTTGATTATGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTACTCTAATTAACTTCTCTCACCCTGTTTTTGATTATGAAATC  150

seq1  AAGATGTTGGACATATTAAAATGCATAATTGTGGTTATTTTCATCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGGACATATTAAAATGCATAATTGTGGTTATTTTCATCCATCT  200

seq1  GTTAACTACAAAATATTCCTAATTGCAAGTAACTCTCTTTGTTTTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTACAAAATATTCCTAATTGCAAGTAACTCTCTTTGTTTTAAAGT  250

seq1  CTTGTCTGTTTTCTACTATTAGTTTTCTTGTGTTTTTTTAATATTATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTTTTCTACTATTAGTTTTCTTGTGTTTTTTTAATATTATAGC  300

seq1  TTACATTTAATCTGCCTTAACATAAAAAGATAAACAGCATATATTGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTAATCTGCCTTAACATAAAAAGATAAACAGCATATATTGGATC  350

seq1  ATCTTTTTAATTCATCTTTATAGTATTGGCCTTTTCACTGACATATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTAATTCATCTTTATAGTATTGGCCTTTTCACTGACATATCCAG  400

seq1  CTCCTCTACCTTTAATATAATTAGTGAGGTGTGGGAACAGACCCACTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTACCTTTAATATAATTAGTGAGGTGTGGGAACAGACCCACTGTT  450

seq1  TCGTTATTCTTTCTGTTTCCCACTATGTTTCCAGTTCTTTCTCTCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATTCTTTCTGTTTCCCACTATGTTTCCAGTTCTTTCTCTCCTCCA  500

seq1  CTCTGGTGCGCTCACGTTTTGACTCCTCTGTTGAATTGTTAGCTCTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGCGCTCACGTTTTGACTCCTCTGTTGAATTGTTAGCTCTACAA  550

seq1  GTCAACACTTAATGTTGGTGCTTAGTGTGCTGTCTTCAGGATAATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACACTTAATGTTGGTGCTTAGTGTGCTGTCTTCAGGATAATATTTA  600

seq1  CACATAGTCATTATAATCTACAGTTGCTGCTGTAACTACACATAAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTCATTATAATCTACAGTTGCTGCTGTAACTACACATAAAGTGT  650

seq1  AAGAACCTCCACATATAGAGATTCACTTTCTATGTCCTATGTTTCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCCACATATAGAGATTCACTTTCTATGTCCTATGTTTCCTCCC  700

seq1  ATATATCCATGAACACTTAAAGTCTATCCATTCCTATTTTTTATATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCATGAACACTTAAAGTCTATCCATTCCTATTTTTTATATTTAT  750

seq1  ATCGTACTTATATTCGTGACTTTGACTACTTTCACAGTTTCTACATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTACTTATATTCGTGACTTTGACTACTTTCACAGTTTCTACATTTTC  800

seq1  TCTTCAGTGTTAACCTTAGGGGGTGTTTGATTTATCCTGCTTTGAGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTGTTAACCTTAGGGGGTGTTTGATTTATCCTGCTTTGAGTTAA  850

seq1  GCGCCTTCTTGAGTCTTATTTTTTAAACCATTTAGAGGTATTCTTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTTCTTGAGTCTTATTTTTTAAACCATTTAGAGGTATTCTTTCTTT  900

seq1  CCTTGATTTCTAGAAATTCACCAGCATGCACTAGATTAGTTTATATTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTTCTAGAAATTCACCAGCATGCACTAGATTAGTTTATATTTCT  950

seq1  TGCAGGCCATT-GGGGTTCTGTTCATTCACTAGAGTCATTTTTTTATTCA  999
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TGCAGGCCATTGGGGGTTCTG-TCATTCACTAGAGTCATTTTTTTATTCA  999

seq1  TTATGATGATACTTAATGCATTGAGCTGTTTCAAAGTCCTTTTGTACTCA  1049
       ||||||||||||||||||||||||||| |||||||||  ||||||||||
seq2  -TATGATGATACTTAATGCATTGAGCTG-TTCAAAGTC--TTTGTACTCA  1045

seq1  TTTTCATAGACCACCATCTTGAGTTCAATTTCCATATACTTCTAAGGTAT  1099
       ||||||||||   |||||||||||||   | ||||||| ||||  | ||
seq2  -TTTCATAGAC--ACATCTTGAGTTCA---TTCATATAC-TCTA--GCAT  1086

seq1  ATATTCTGGAGATATTTCTCCGTGCAAGTTTTATTC  1135
      ||||||| || || || |||||||||||  ||||||
seq2  ATATTCT-GAAATTTTCCTCCGTGCAAG-GTTATTC  1120


| Home | SequenceCutter | Blast | Download |