BAC Information

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BAC

Clone NameB6Ng01-309N08
Chromosome5 (Build37)
Map Location 84,695,974 - 84,786,547
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-309N08.bB6Ng01-309N08.g
ACCGA101976GA101977
length1,1491,063
definitionB6Ng01-309N08.b B6Ng01-309N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,785,384 - 84,786,547)(84,695,974 - 84,697,042)
sequence
gaattcaagaaacattctattatatcctgagatttataaacactgtcgta
catgtctaaataagtctctttctaaagacacaaatctgatgttcacttct
catagtgcatgtgtatgtagctacaagacagtgagtgcttactgttttca
aacacattagttctgatctcacacacaaatgtatcatttcatgtcctcta
attatgcttaatatttagtaagttcatcaaagaaaactttgcaattccat
tattggttatgctacctgttatacttccgacaaaactttttattgaaaaa
ggaattggtttatctatctgtaagatttagacaaataatcctgactcgga
aatttttcatgtgatttcatcaatggcttttattaaattgtacaatgata
ttcatgaaatacatatactctcttatttactcacaagaagatatcatttc
actcagaccatctttataaagccactaattccaaatttacatacttcagt
ctccattatgaagcaattctgaatatacctgaaatatcgaaaccctgggc
ctgtccacctcatatatccattttatagagcaagaagacataatttatgt
tttccttatagcattttacaaggcttgacattgtattatattttaatgtt
tgctaattattattaagcatccagttgttaaaatagtattgaagagtagt
ttagtttagtttagttttatctttactttagcaagaaaaaaaacctggtc
agcatttcaaattaatgatggttcatagtgacaaatcccagaaattgtag
gtgatatctattgccagaagtaaacgtgacatataaaataactcgattga
cactgtcagcgtttggcaatagtcagtttgcatgtgagtcaagttttgtt
cagtacctagctgattgttggagatttagctcctgtggttggctaaggca
cagtggccacaatggactcttgatttacatgctatttctacagtgcaaag
gataactgatgtcaaatagagccacttgggccaacttaccaatctactac
aggactggcttagaaaatattattttcattctcacatgaaagcatggtga
cagattgagaaaacagactttttttcttttgttagtctctatagtggta

gaattcaatttaattgaataattctaaataatattatttgtatggggatt
aaacttgctcagaaaggtattataaaattcaaattaaactttctataaaa
attgttttatttttagatatttttaaaatgcactaaaggagaacacttca
tattttttataaaagtactaaataatagttgtattattatatattagaaa
taagacacaacacagcattttactttggttagcatattagtatatttgta
acttttgataaatgtgttcagaaactttcacatctcctggaaaggctgga
tccatgtcagacacacagtgcattgaaacaataattgccccatcccatcc
ctttaaaacaacagataagcagtttatcactttgatctggtttcttcagt
tcactaacctgccttgctttgtgacaggcatcaaaatctcttataattgg
cttgttcactgtacggcaaggaaacctctgctcctaccaatgtcttggaa
gaaaatagctttcagttttaaaatatagagttataatgttgatctattac
acactcaggcatatttcattgattttttatacaaaatttaattatcttac
acactctcaaatactaatgcaatcattctttgagtaacaaattgtactgt
agtatttggaaacaaatattttatgaaacttttttaagcccttacattct
caataattttattaaagattgtattaaaataaattatatcagtgtatgga
tcactatcaaaaccaaccttaaaaatctatgaactaacatttactcacca
attttagccatctaaaaggcacacagttataatctttcaaaaagaaccaa
agaaaatatgaaacataaaattgtaggtctatatttcatatgtatcaagg
atataataaaaatattttgttagtgtctcagattaaaattatgcaaggac
tcaactggaagtaaaagaataattatgatgtatgttctctggttttatgt
atccaatttattgtgacatgcataatatgtgtacttttacaaggtgtacc
atgatccacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84785384_84786547
seq2: B6Ng01-309N08.b_49_1197 (reverse)

seq1  TACCACATATAGAGACATAACAAAAAAGAAAAAAAAATCCTGTTTTTCTC  50
      |||||| ||||||||| |||||||    | |||||||  ||| |||||||
seq2  TACCAC-TATAGAGAC-TAACAAA----AGAAAAAAAGTCTG-TTTTCTC  43

seq1  -ATCTGTCA-CATGCTTTCATGGTGAAGAATTGAAAT-ATATTTTCCTAA  97
       |||||||| ||||||||||| ||| |||||  |||| ||||||| ||||
seq2  AATCTGTCACCATGCTTTCAT-GTG-AGAATGAAAATAATATTTT-CTAA  90

seq1  GCCCAGTCCCTGTAGTAGATTGGTAAGTTTGGCCCAAAGTGGCTCTATTT  147
      | ||||| ||||||||||||||||||| ||||||| ||||||||||| ||
seq2  G-CCAGT-CCTGTAGTAGATTGGTAAG-TTGGCCC-AAGTGGCTCTA-TT  135

seq1  TGACATCAGTTATCCTTTTGCACTGTAGAAATAGCATTGTAAATCAAGAG  197
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TGACATCAGTTATCC-TTTGCACTGTAGAAATAGCA-TGTAAATCAAGAG  183

seq1  TCCATTGTTGGCCACTGTGCCTTAGCCAACCACAGGAGCTAAATCTCCAA  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTG-TGGCCACTGTGCCTTAGCCAACCACAGGAGCTAAATCTCCAA  232

seq1  CAATCAGCTAGGTACTGAACAAAACTTGACTCACATGCAAACTGACTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCTAGGTACTGAACAAAACTTGACTCACATGCAAACTGACTATT  282

seq1  GCCAAACGCTGACAGTGTCAATCGAGTTATTTTATATGTCACGTTTACTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACGCTGACAGTGTCAATCGAGTTATTTTATATGTCACGTTTACTT  332

seq1  CTGGCAATAGATATCACCTACAATTTCTGGGATTTGTCACTATGAACCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATAGATATCACCTACAATTTCTGGGATTTGTCACTATGAACCAT  382

seq1  CATTAATTTGAAATGCTGACCAGGTTTTTTTTCTTGCTAAAGTAAAGATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTGAAATGCTGACCAGGTTTTTTTTCTTGCTAAAGTAAAGATA  432

seq1  AAACTAAACTAAACTAAACTACTCTTCAATACTATTTTAACAACTGGATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAACTAAACTAAACTACTCTTCAATACTATTTTAACAACTGGATG  482

seq1  CTTAATAATAATTAGCAAACATTAAAATATAATACAATGTCAAGCCTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAATAATTAGCAAACATTAAAATATAATACAATGTCAAGCCTTGT  532

seq1  AAAATGCTATAAGGAAAACATAAATTATGTCTTCTTGCTCTATAAAATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTATAAGGAAAACATAAATTATGTCTTCTTGCTCTATAAAATGG  582

seq1  ATATATGAGGTGGACAGGCCCAGGGTTTCGATATTTCAGGTATATTCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGGTGGACAGGCCCAGGGTTTCGATATTTCAGGTATATTCAGA  632

seq1  ATTGCTTCATAATGGAGACTGAAGTATGTAAATTTGGAATTAGTGGCTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCATAATGGAGACTGAAGTATGTAAATTTGGAATTAGTGGCTTT  682

seq1  ATAAAGATGGTCTGAGTGAAATGATATCTTCTTGTGAGTAAATAAGAGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGGTCTGAGTGAAATGATATCTTCTTGTGAGTAAATAAGAGAG  732

seq1  TATATGTATTTCATGAATATCATTGTACAATTTAATAAAAGCCATTGATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATTTCATGAATATCATTGTACAATTTAATAAAAGCCATTGATG  782

seq1  AAATCACATGAAAAATTTCCGAGTCAGGATTATTTGTCTAAATCTTACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACATGAAAAATTTCCGAGTCAGGATTATTTGTCTAAATCTTACAG  832

seq1  ATAGATAAACCAATTCCTTTTTCAATAAAAAGTTTTGTCGGAAGTATAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAACCAATTCCTTTTTCAATAAAAAGTTTTGTCGGAAGTATAAC  882

seq1  AGGTAGCATAACCAATAATGGAATTGCAAAGTTTTCTTTGATGAACTTAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCATAACCAATAATGGAATTGCAAAGTTTTCTTTGATGAACTTAC  932

seq1  TAAATATTAAGCATAATTAGAGGACATGAAATGATACATTTGTGTGTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAAGCATAATTAGAGGACATGAAATGATACATTTGTGTGTGAG  982

seq1  ATCAGAACTAATGTGTTTGAAAACAGTAAGCACTCACTGTCTTGTAGCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAACTAATGTGTTTGAAAACAGTAAGCACTCACTGTCTTGTAGCTA  1032

seq1  CATACACATGCACTATGAGAAGTGAACATCAGATTTGTGTCTTTAGAAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATGCACTATGAGAAGTGAACATCAGATTTGTGTCTTTAGAAAG  1082

seq1  AGACTTATTTAGACATGTACGACAGTGTTTATAAATCTCAGGATATAATA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTATTTAGACATGTACGACAGTGTTTATAAATCTCAGGATATAATA  1132

seq1  GAATGTTTCTTGAATTC  1164
      |||||||||||||||||
seq2  GAATGTTTCTTGAATTC  1149


seq1: chr5_84695974_84697042
seq2: B6Ng01-309N08.g_66_1128

seq1  GAATTCAATTTAATTGAATAATTCTAAATAATATTATTTGTATGGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAATTGAATAATTCTAAATAATATTATTTGTATGGGGATT  50

seq1  AAACTTGCTCAGAAAGGTATTATAAAATTCAAATTAAACTTTCTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGCTCAGAAAGGTATTATAAAATTCAAATTAAACTTTCTATAAAA  100

seq1  ATTGTTTTATTTTTAGATATTTTTAAAATGCACTAAAGGAGAACACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATTTTTAGATATTTTTAAAATGCACTAAAGGAGAACACTTCA  150

seq1  TATTTTTTATAAAAGTACTAAATAATAGTTGTATTATTATATATTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATAAAAGTACTAAATAATAGTTGTATTATTATATATTAGAAA  200

seq1  TAAGACACAACACAGCATTTTACTTTGGTTAGCATATTAGTATATTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACACAACACAGCATTTTACTTTGGTTAGCATATTAGTATATTTGTA  250

seq1  ACTTTTGATAAATGTGTTCAGAAACTTTCACATCTCCTGGAAAGGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATAAATGTGTTCAGAAACTTTCACATCTCCTGGAAAGGCTGGA  300

seq1  TCCATGTCAGACACACAGTGCATTGAAACAATAATTGCCCCATCCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCAGACACACAGTGCATTGAAACAATAATTGCCCCATCCCATCC  350

seq1  CTTTAAAACAACAGATAAGCAGTTTATCACTTTGATCTGGTTTCTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAACAACAGATAAGCAGTTTATCACTTTGATCTGGTTTCTTCAGT  400

seq1  TCACTAACCTGCCTTGCTTTGTGACAGGCATCAAAATCTCTTATAATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAACCTGCCTTGCTTTGTGACAGGCATCAAAATCTCTTATAATTGG  450

seq1  CTTGTTCACTGTACGGCAAGGAAACCTCTGCTCCTACCAATGTCTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCACTGTACGGCAAGGAAACCTCTGCTCCTACCAATGTCTTGGAA  500

seq1  GAAAATAGCTTTCAGTTTTAAAATATAGAGTTATAATGTTGATCTATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGCTTTCAGTTTTAAAATATAGAGTTATAATGTTGATCTATTAC  550

seq1  ACACTCAGGCATATTTCATTGATTTTTTATACAAAATTTAATTATCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGCATATTTCATTGATTTTTTATACAAAATTTAATTATCTTAC  600

seq1  ACACTCTCAAATACTAATGCAATCATTCTTTGAGTAACAAATTGTACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCAAATACTAATGCAATCATTCTTTGAGTAACAAATTGTACTGT  650

seq1  AGTATTTGGAAACAAATATTTTATGAAACTTTTTTAAGCCCTTACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGAAACAAATATTTTATGAAACTTTTTTAAGCCCTTACATTCT  700

seq1  CAATAATTTTATTAAAGATTGTATTAAAATAAATTATATCAGTGTATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATTTTATTAAAGATTGTATTAAAATAAATTATATCAGTGTATGGA  750

seq1  TCACTATCAAAACCAACCTTAAAAATCTATGAACTAACATTTACTCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATCAAAACCAACCTTAAAAATCTATGAACTAACATTTACTCACCA  800

seq1  ATTTTAGCCATCTAAAAGGCACACAGTTATAATCTTTCAAAAAGAACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCCATCTAAAAGGCACACAGTTATAATCTTTCAAAAAGAACCAA  850

seq1  AGAAAATATGAAACATAAAATTGTAGGTCTATATTTCATATGTATCAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATGAAACATAAAATTGTAGGTCTATATTTCATATGTATCAAGG  900

seq1  ATATAATAAAAATATTTTGTTAGTGTCTCAGGATTAAAATTATGCAAGGG  950
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  ATATAATAAAAATATTTTGTTAGTGTCTCA-GATTAAAATTATGCAA-GG  948

seq1  ACTCAACTGGAAGTAAAAAGAATAATTAATGATGTATGTTCTCTGGTTTT  1000
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  ACTCAACTGGAAGT-AAAAGAATAATT-ATGATGTATGTTCTCTGGTTTT  996

seq1  ATGTATCCAATTTATTGTGACATGCATAATATGTGTACCTTTTACAAGGG  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ATGTATCCAATTTATTGTGACATGCATAATATGTGTA-CTTTTACAA-GG  1044

seq1  TGTTACCATGAT-CACAGCC  1069
      || ||||||||| |||||||
seq2  TG-TACCATGATCCACAGCC  1063


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