BAC Information

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BAC

Clone NameB6Ng01-310C14
Chromosome5 (Build37)
Map Location 124,128,821 - 124,274,900
singlet/doubletdoublet
Overlap geneClip1, Zcchc8, Rsrc2, Kntc1
Upstream geneP2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a
Downstream geneLOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310C14.bB6Ng01-310C14.g
ACCGA102214GA102215
length9901,063
definitionB6Ng01-310C14.b B6Ng01-310C14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,128,821 - 124,129,583)(124,273,829 - 124,274,900)
sequence
gaattcacagggatctgcctgcctctgcctcctgaatgctgggatgaaaa
gattgcaataccatgcctggctttcatattgcccccccccaaaaaaaaca
tttctaataaaatatctctactatcacttatttctcctgatcctttgtga
gttaaagactgtgtagggccagaaagatgtctcagtggataagggcacta
tgtgccaggcctagtcactctagagactggcctaggccttctggtcctag
aaaccatatggtaaaagaaaaaaaaaacatttctcctgcactgtcctctc
tagtggttccaatgactgtctctcccataggctcaggaacttgagcactt
ggtcctcgggtgatactgtctggggaagtggtgcagcaccactggggtgg
gctttgagagttccagcctcagcccacttccagtttgcttcatgcttgcc
agtgaagatatgatctctcagttttctgctactgccccctgctgccatga
ctcccgggccattatagactccctctctggaagcttaagccccaaccctc
ttgtacaagttgacttggtcctggtcttttatcacagcaacaataaagta
acaagtcctctgacctccacgttcatgctgtagcatgagcatgcaatgag
agcacacacacacacacacacacacacacacagacacacacacacacaca
gacacacacacacacacagacacacacacacagacacacacacacacaca
cacacagacacacacacacacacacagacacacacacacacacacacaca
cagacacacacacacacacacacacacacacatacacacacacacagaca
cacacacacacacacagacacacacacacacacacacacacagacacaca
cattacatacacatgcaggcaaaacactagtacagttaaaataaaaataa
tctccccttttctctttttaaaaaataaaccctataattt
gaattccttggactttcagatcagccagggctaaaaccaaatgtgcattt
tttttttttcttctttgagacagggtttctctgtgtatccctggctatcc
tggaactctgtagaccaggctggtcttggatgcacaaagatctgcctgcc
tctgctaggattaaaagtgtgtaccaccatagccctgctacatgaacatt
tctcacaggaagttgatactaacactgaacatagagaaacatttctctca
gagcagccagattctcttgtagccttccagacagcatcactcacagattt
tcaggtttactaacatgtgacagaatgctgtatacagtcagatattttgt
tggggtgctgctatgcttctgtgggtgcctggacaatcacagacatcttg
cttggctgcagggagtatacttctgttggaactttccccagcagtgctca
ttgatgtttgtaaagaaaaccagggccacatagcaagatgccaccaataa
atgtgtagtggacagcgatctgaggtccttggccagctatatttctctgg
ttctgtctcatgtgtagagcttatagttggacttagaggaacagcacaga
gtatgtgtatcctgtttcccagaacttgcattccacctgacttttgtttt
tttaggtaaatttagagggtaaaaaaatacaacctggagacaaaacagaa
attgattccaaatcctggaacatgctagataggaactctcattacagggc
tatgttcttggaggcataacacacacacacacacttaaaatatccttctg
cttctatctcccagatatttggactaagggcatgagccccatgctcagct
aaaaacaatgctcatcttactttctagatagcctcatgtatcctagaact
cctaactaatgtagtcacagatgagcctgaatttctctcctatcctgtgg
tcctgggggttaaagtcaggtcaccaggtttggtggcagctgcctttatt
ctgctagcaactcacagctctgtcctaatgtttaaaagtacttacatggg
tatgggagcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124128821_124129583
seq2: B6Ng01-310C14.b_47_999

seq1  GAATTCACAGGGATCTGCCTGCCTCTGCCTCCTGAATGCTGGGATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGGATCTGCCTGCCTCTGCCTCCTGAATGCTGGGATGAAAA  50

seq1  GATTGCAATACCATGCCTGGCTTTCATATTGCCCCCCCCCAAAAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAATACCATGCCTGGCTTTCATATTGCCCCCCCCCAAAAAAAACA  100

seq1  TTTCTAATAAAATATCTCTACTATCACTTATTTCTCCTGATCCTTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATAAAATATCTCTACTATCACTTATTTCTCCTGATCCTTTGTGA  150

seq1  GTTAAAGACTGTGTAGGGCCAGAAAGATGTCTCAGTGGATAAGGGCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGACTGTGTAGGGCCAGAAAGATGTCTCAGTGGATAAGGGCACTA  200

seq1  TGTGCCAGGCCTAGTCACTCTAGAGACTGGCCTAGGCCTTCTGGTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGCCTAGTCACTCTAGAGACTGGCCTAGGCCTTCTGGTCCTAG  250

seq1  AAACCATATGGTAAAAGAAAAAAAAAACATTTCTCCTGCACTGTCCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATGGTAAAAGAAAAAAAAAACATTTCTCCTGCACTGTCCTCTC  300

seq1  TAGTGGTTCCAATGACTGTCTCTCCCATAGGCTCAGGAACTTGAGCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGTTCCAATGACTGTCTCTCCCATAGGCTCAGGAACTTGAGCACTT  350

seq1  GGTCCTCGGGTGATACTGTCTGGGGAAGTGGTGCAGCACCACTGGGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCGGGTGATACTGTCTGGGGAAGTGGTGCAGCACCACTGGGGTGG  400

seq1  GCTTTGAGAGTTCCAGCCTCAGCCCACTTCCAGTTTGCTTCATGCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGAGTTCCAGCCTCAGCCCACTTCCAGTTTGCTTCATGCTTGCC  450

seq1  AGTGAAGATATGATCTCTCAGTTTTCTGCTACTGCCCCCTGCTGCCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGATATGATCTCTCAGTTTTCTGCTACTGCCCCCTGCTGCCATGA  500

seq1  CTCCCGGGCCATTATAGACTCCCTCTCTGGAAGCTTAAGCCCCAACCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGGGCCATTATAGACTCCCTCTCTGGAAGCTTAAGCCCCAACCCTC  550

seq1  TTGTACAAGTTGACTTGGTCCTGGTCTTTTATCACAGCAACAATAAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGTTGACTTGGTCCTGGTCTTTTATCACAGCAACAATAAAGTA  600

seq1  ACAAGTCCTCTGACCTCCACGTTCATGCTGTAGCATGAGCATGCAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCTCTGACCTCCACGTTCATGCTGTAGCATGAGCATGCAATGAG  650

seq1  AGCACACACACACACACACACACACACACACAGACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACACACACACACACACACACACACAGACACACACACACACACA  700

seq1  GACACACACACACACACAGACACACACACACAGAGGTAAAGTAAAACAAA  750
      ||||||||||||||||||||||||||||||||||   | |   | || | 
seq2  GACACACACACACACACAGACACACACACACAGACACACACACACAC-AC  749

seq1  ATAAAAATAATCT-------------------------------------  763
      | | | | |  |                                      
seq2  ACACACAGACACACACACACACACACAGACACACACACACACACACACAC  799

seq1  --------------------------------------------------  763
                                                        
seq2  ACAGACACACACACACACACACACACACACACATACACACACACACAGAC  849

seq1  --------------------------------------------------  763
                                                        
seq2  ACACACACACACACACAGACACACACACACACACACACACACAGACACAC  899

seq1  --------------------------------------------------  763
                                                        
seq2  ACATTACATACACATGCAGGCAAAACACTAGTACAGTTAAAATAAAAATA  949

seq1  ----  763
          
seq2  ATCT  953

seq1: chr5_124273829_124274900
seq2: B6Ng01-310C14.g_68_1130 (reverse)

seq1  CTCTGCCTCCCATACCCATGGTAAAGTTACTTTTTAAAACATTAGGACAG  50
      ||||| ||||||||||||| ||||   |||||||  ||||||||||||||
seq2  CTCTG-CTCCCATACCCAT-GTAA--GTACTTTT--AAACATTAGGACAG  44

seq1  AGCTGGTGAGTTTGCTAAGCAG-ATAAAGGCAGCTGCCACCAAACCTGGT  99
      |||| ||||| ||||| ||||| |||||||||||||||||||||||||||
seq2  AGCT-GTGAG-TTGCT-AGCAGAATAAAGGCAGCTGCCACCAAACCTGGT  91

seq1  GACCTGACTTTAACCCCCAGGACCCACAGGATAGGAGAGAAATTCAGGCT  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACCTGACTTTAACCCCCAGGA-CCACAGGATAGGAGAGAAATTCAGGCT  140

seq1  CATCTGTGACTACATTAGTTAGGAGTTCTAGGATACATGAGGCTATCTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGACTACATTAGTTAGGAGTTCTAGGATACATGAGGCTATCTAG  190

seq1  AAAGTAAGATGAGCATTGTTTTTAGCTGAGCATGGGGCTCATGCCCTTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGATGAGCATTGTTTTTAGCTGAGCATGGGGCTCATGCCCTTAG  240

seq1  TCCAAATATCTGGGAGATAGAAGCAGAAGGATATTTTAAGTGTGTGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATATCTGGGAGATAGAAGCAGAAGGATATTTTAAGTGTGTGTGTG  290

seq1  TGTGTTATGCCTCCAAGAACATAGCCCTGTAATGAGAGTTCCTATCTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTATGCCTCCAAGAACATAGCCCTGTAATGAGAGTTCCTATCTAGC  340

seq1  ATGTTCCAGGATTTGGAATCAATTTCTGTTTTGTCTCCAGGTTGTATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAGGATTTGGAATCAATTTCTGTTTTGTCTCCAGGTTGTATTTT  390

seq1  TTTACCCTCTAAATTTACCTAAAAAAACAAAAGTCAGGTGGAATGCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTCTAAATTTACCTAAAAAAACAAAAGTCAGGTGGAATGCAAGT  440

seq1  TCTGGGAAACAGGATACACATACTCTGTGCTGTTCCTCTAAGTCCAACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAACAGGATACACATACTCTGTGCTGTTCCTCTAAGTCCAACTA  490

seq1  TAAGCTCTACACATGAGACAGAACCAGAGAAATATAGCTGGCCAAGGACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTACACATGAGACAGAACCAGAGAAATATAGCTGGCCAAGGACC  540

seq1  TCAGATCGCTGTCCACTACACATTTATTGGTGGCATCTTGCTATGTGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCGCTGTCCACTACACATTTATTGGTGGCATCTTGCTATGTGGCC  590

seq1  CTGGTTTTCTTTACAAACATCAATGAGCACTGCTGGGGAAAGTTCCAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTCTTTACAAACATCAATGAGCACTGCTGGGGAAAGTTCCAACA  640

seq1  GAAGTATACTCCCTGCAGCCAAGCAAGATGTCTGTGATTGTCCAGGCACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATACTCCCTGCAGCCAAGCAAGATGTCTGTGATTGTCCAGGCACC  690

seq1  CACAGAAGCATAGCAGCACCCCAACAAAATATCTGACTGTATACAGCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGCATAGCAGCACCCCAACAAAATATCTGACTGTATACAGCATT  740

seq1  CTGTCACATGTTAGTAAACCTGAAAATCTGTGAGTGATGCTGTCTGGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATGTTAGTAAACCTGAAAATCTGTGAGTGATGCTGTCTGGAAG  790

seq1  GCTACAAGAGAATCTGGCTGCTCTGAGAGAAATGTTTCTCTATGTTCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGAGAATCTGGCTGCTCTGAGAGAAATGTTTCTCTATGTTCAGT  840

seq1  GTTAGTATCAACTTCCTGTGAGAAATGTTCATGTAGCAGGGCTATGGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTATCAACTTCCTGTGAGAAATGTTCATGTAGCAGGGCTATGGTGG  890

seq1  TACACACTTTTAATCCTAGCAGAGGCAGGCAGATCTTTGTGCATCCAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTTTTAATCCTAGCAGAGGCAGGCAGATCTTTGTGCATCCAAGA  940

seq1  CCAGCCTGGTCTACAGAGTTCCAGGATAGCCAGGGATACACAGAGAAACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTTCCAGGATAGCCAGGGATACACAGAGAAACC  990

seq1  CTGTCTCAAAGAAGAAAAAAAAAAAATGCACATTTGGTTTTAGCCCTGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCAAAGAAGAAAAAAAAAAAATGCACATTTGGTTTTAGCCCTGGC  1040

seq1  TGATCTGAAAGTCCAAGGAATTC  1072
      |||||||||||||||||||||||
seq2  TGATCTGAAAGTCCAAGGAATTC  1063