BAC Information

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BAC

Clone NameB6Ng01-310F08
Chromosome5 (Build37)
Map Location 64,339,877 - 64,448,841
singlet/doubletdoublet
Overlap geneAA536743, LOC100041636, LOC100041646
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik
Downstream genePgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310F08.bB6Ng01-310F08.g
ACCGA102337GA102338
length1,138992
definitionB6Ng01-310F08.b B6Ng01-310F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,447,698 - 64,448,841)(64,339,877 - 64,340,869)
sequence
gaattcaaaacggtccttgcttcttcagaatacagaaagctgaattcaca
ttaaaaacaaaaaacaaaaatagaagctccttctgggttcttagaattgg
tgttcgtgcctccagcaggctaagcacaggttctaccactgggctacatc
cctagtgcttgattgctgccttatttgggatttaagatcctgcattctga
taggacaaattggtgtctctgcctctttcaaagtatttcaaagcaacctg
tttagccactctgagctgcccagctggcattggaaagatttttcagagcc
ttctctctccagaccttcaggctatagagcatgaagttctttctccatgc
ttgtaaaagccttttatctgggtgtgtagattaagaagctgcagatgaca
tcaaacgtgatagaaacagacacaaagcacttacccggacaaaccgtcac
cgaactaagctttgtttgaagttgcagatctacatgcccagaggtggacg
gcaatgaggctgaccttgtctcccttgttttcatttcccctccttgcttg
gggttcccatcagccaaaacaaaatcatggagaggagcaaaggctgccct
ccttaagatccatgtagatggaaatagatggactggaggtattattcttc
tctcttgaaggaaaagaaaagcaaggtgaatgatttgggtgtgtgccaga
gaccatcattccctggggttatgtcagcttctcaatgcatgagcatcaga
gtaggtctgagttggttttggtcttagtataaccagataaacagtcttcc
tcttctatagggtatcagtccacatatgggggagctggattctttccctg
atccaagcttccattttcagaggacggatcatgaagaaacagcaaaaagg
cagaacaagtcatttggctcagtgaaatgtgtgaattacattacctcaga
gattagagaagaaagtccacacattgttagcacatgggaacttgggaatc
atggcttaagtctgccttagttacttttctagtactgtgagactcatcat
ggccaaggcaaattgtaagaagcattcatttgggattatggttcagagcg
tagtagatccatgaacgtcacgtggggagtatggcttc

gaattcataagcaccacagtctgacttggcagcagaggtcactttggcat
caatggaagcctccattggctcctcggtaaaccatgtgggacccagcaat
gtcaggatctgacccaccaacttaacacctacgcccctggagcctagcat
cactaaggcaaccttcacttgtaatgggaagtgcagagcaacttgcggtc
gtgactcagaagtgatgctttaagcccagtcagtctctctgcagcctttg
agaagtaccacggggtttgagaagggatgcaccaagaacgcaggtaggag
gagcacttcatagtagacctacgtaggacaagtgacctggctggacaaaa
gggaacaaatgctctgcccagaagggaagctgggaacaaagcagaagcag
tgcaaacccaggtagctccgtgatcaaaggacccaaactgcagtgacgtt
aatattttaagttttttttttaagtaatctaaatatttaccatccctggt
ttctatttaaactaagatggagggaaatttttagagtctaagaaagtccc
tacctgtctctaacactggagaaccctttgaccaaacaaatcccttaagg
agacagaaaggctgaccaaagacaacagctgttgaccctgcccctagcta
ctcctcaggaagggattaactccaggatcctgggcatctggagaggtcac
tggctaaagttctggcctccttggcaatcttccagcctacttcaaacaat
ggctagcattcagagtcaggcagaggcagatcacaccaggcctgaaaatg
ggacatggtcgacttaccacacttctgctctggcacccagggcaggaagc
aatcgaccatgcctctaagacagagaaaggtaaagagtctcagaggcacc
ccaagaggcaggcacatcagtgaagtcatgcccaaaggtcaatcaatggt
ggaacggcctcaggcagggcgggggggtggggggggcacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64447698_64448841
seq2: B6Ng01-310F08.b_46_1183 (reverse)

seq1  GAAGCCATACTCCCCACCGTGACGGTCATGGATTCTACTACGCTCTGGAA  50
      |||||||||||||||| ||||||| ||||||| ||||||||||||| |||
seq2  GAAGCCATACTCCCCA-CGTGACGTTCATGGA-TCTACTACGCTCT-GAA  47

seq1  CCATAAACCCCAAATTGAATGCTTTCCTTTACAATTTGCCTTGGCCATGA  100
      |||||| |||  || |||||||||    ||||||||||||||||||||||
seq2  CCATAATCCC--AAATGAATGCTT---CTTACAATTTGCCTTGGCCATGA  92

seq1  TGTGTCTTCACAGTACTAGAAAAGTAACTAAGGCAGACTTAAGCCATGAT  150
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTC-TCACAGTACTAGAAAAGTAACTAAGGCAGACTTAAGCCATGAT  141

seq1  TCCCAAGTTCCCATGTGCT-ACAATGTGTGGACTTTCTTCTCTAATCTCT  199
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCAAGTTCCCATGTGCTAACAATGTGTGGACTTTCTTCTCTAATCTCT  191

seq1  GAGGTAATGTAATTCACACATTTCACTGAGCCAAATGACTTGTTCTGCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAATGTAATTCACACATTTCACTGAGCCAAATGACTTGTTCTGCCT  241

seq1  TTTTGCTGTTTCTTCATGATCCGTCCTCTGAAAATGGAAGCTTGGATCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTTCTTCATGATCCGTCCTCTGAAAATGGAAGCTTGGATCAG  291

seq1  GG-AAGAATCCAGCT-CCCCATATGTGGACTGATACCCTATAGAAGAGGA  347
      || |||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATCCAGCTCCCCCATATGTGGACTGATACCCTATAGAAGAGGA  341

seq1  AGACTGTTTATCTGGTTATACTAAGACCAAAACCAACTCAGACCTACTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTTATCTGGTTATACTAAGACCAAAACCAACTCAGACCTACTCT  391

seq1  GATGCTCATGCATTGAGAAGCTGACATAACCCCAGGGAATGATGGTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCATGCATTGAGAAGCTGACATAACCCCAGGGAATGATGGTCTCT  441

seq1  GGCACACACCCAAATCATTCACCTTGCTTTTCTTTTCCTTCAAGAGAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACCCAAATCATTCACCTTGCTTTTCTTTTCCTTCAAGAGAGAA  491

seq1  GAATAATACCTCCAGTCCATCTATTTCCATCTACATGGATCTTAAGGAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATACCTCCAGTCCATCTATTTCCATCTACATGGATCTTAAGGAGG  541

seq1  GCAGCCTTTGCTCCTCTCCATGATTTTGTTTTGGCTGATGGGAACCCCAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTTGCTCCTCTCCATGATTTTGTTTTGGCTGATGGGAACCCCAA  591

seq1  GCAAGGAGGGGAAATGAAAACAAGGGAGACAAGGTCAGCCTCATTGCCGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGGGGAAATGAAAACAAGGGAGACAAGGTCAGCCTCATTGCCGT  641

seq1  CCACCTCTGGGCATGTAGATCTGCAACTTCAAACAAAGCTTAGTTCGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGGGCATGTAGATCTGCAACTTCAAACAAAGCTTAGTTCGGTG  691

seq1  ACGGTTTGTCCGGGTAAGTGCTTTGTGTCTGTTTCTATCACGTTTGATGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTGTCCGGGTAAGTGCTTTGTGTCTGTTTCTATCACGTTTGATGT  741

seq1  CATCTGCAGCTTCTTAATCTACACACCCAGATAAAAGGCTTTTACAAGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCAGCTTCTTAATCTACACACCCAGATAAAAGGCTTTTACAAGCA  791

seq1  TGGAGAAAGAACTTCATGCTCTATAGCCTGAAGGTCTGGAGAGAGAAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAACTTCATGCTCTATAGCCTGAAGGTCTGGAGAGAGAAGGC  841

seq1  TCTGAAAAATCTTTCCAATGCCAGCTGGGCAGCTCAGAGTGGCTAAACAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAATCTTTCCAATGCCAGCTGGGCAGCTCAGAGTGGCTAAACAG  891

seq1  GTTGCTTTGAAATACTTTGAAAGAGGCAGAGACACCAATTTGTCCTATCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTGAAATACTTTGAAAGAGGCAGAGACACCAATTTGTCCTATCA  941

seq1  GAATGCAGGATCTTAAATCCCAAATAAGGCAGCAATCAAGCACTAGGGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGGATCTTAAATCCCAAATAAGGCAGCAATCAAGCACTAGGGAT  991

seq1  GTAGCCCAGTGGTAGAACCTGTGCTTAGCCTGCTGGAGGCACGAACACCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGTGGTAGAACCTGTGCTTAGCCTGCTGGAGGCACGAACACCA  1041

seq1  ATTCTAAGAACCCAGAAGGAGCTTCTATTTTTGTTTTTTGTTTTTAATGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGAACCCAGAAGGAGCTTCTATTTTTGTTTTTTGTTTTTAATGT  1091

seq1  GAATTCAGCTTTCTGTATTCTGAAGAAGCAAGGACCGTTTTGAATTC  1144
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTCTGTATTCTGAAGAAGCAAGGACCGTTTTGAATTC  1138


seq1: chr5_64339877_64340869
seq2: B6Ng01-310F08.g_67_1058

seq1  GAATTCATAAGCACCACAGTCTGACTTGGCAGCAGAGGTCACTTTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGCACCACAGTCTGACTTGGCAGCAGAGGTCACTTTGGCAT  50

seq1  CAATGGAAGCCTCCATTGGCTCCTCGGTAAACCATGTGGGACCCAGCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAAGCCTCCATTGGCTCCTCGGTAAACCATGTGGGACCCAGCAAT  100

seq1  GTCAGGATCTGACCCACCAACTTAACACCTACGCCCCTGGAGCCTAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATCTGACCCACCAACTTAACACCTACGCCCCTGGAGCCTAGCAT  150

seq1  CACTAAGGCAACCTTCACTTGTAATGGGAAGTGCAGAGCAACTTGCGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGCAACCTTCACTTGTAATGGGAAGTGCAGAGCAACTTGCGGTC  200

seq1  GTGACTCAGAAGTGATGCTTTAAGCCCAGTCAGTCTCTCTGCAGCCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAGAAGTGATGCTTTAAGCCCAGTCAGTCTCTCTGCAGCCTTTG  250

seq1  AGAAGTACCACGGGGTTTGAGAAGGGATGCACCAAGAACGCAGGTAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACCACGGGGTTTGAGAAGGGATGCACCAAGAACGCAGGTAGGAG  300

seq1  GAGCACTTCATAGTAGACCTACGTAGGACAAGTGACCTGGCTGGACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTCATAGTAGACCTACGTAGGACAAGTGACCTGGCTGGACAAAA  350

seq1  GGGAACAAATGCTCTGCCCAGAAGGGAAGCTGGGAACAAAGCAGAAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAATGCTCTGCCCAGAAGGGAAGCTGGGAACAAAGCAGAAGCAG  400

seq1  TGCAAACCCAGGTAGCTCCGTGATCAAAGGACCCAAACTGCAGTGACGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCCAGGTAGCTCCGTGATCAAAGGACCCAAACTGCAGTGACGTT  450

seq1  AATATTTTAAGTTTTTTTTTTAAGTAATCTAAATATTTACCATCCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAAGTTTTTTTTTTAAGTAATCTAAATATTTACCATCCCTGGT  500

seq1  TTCTATTTAAACTAAGATGGAGGGAAATTTTTAGAGTCTAAGAAAGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTAAACTAAGATGGAGGGAAATTTTTAGAGTCTAAGAAAGTCCC  550

seq1  TACCTGTCTCTAACACTGGAGAACCCTTTGACCAAACAAATCCCTTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCTCTAACACTGGAGAACCCTTTGACCAAACAAATCCCTTAAGG  600

seq1  AGACAGAAAGGCTGACCAAAGACAACAGCTGTTGACCCTGCCCCTAGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAGGCTGACCAAAGACAACAGCTGTTGACCCTGCCCCTAGCTA  650

seq1  CTCCTCAGGAAGGGATTAACTCCAGGATCCTGGGCATCTGGAGAGGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGAAGGGATTAACTCCAGGATCCTGGGCATCTGGAGAGGTCAC  700

seq1  TGGCTAAAGTTCTGGCCTCCTTGGCAATCTTCCAGCCTACTTCAAACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAAGTTCTGGCCTCCTTGGCAATCTTCCAGCCTACTTCAAACAAT  750

seq1  GGCTAGCATTCAGGAGTCAGGCAGAGGCAGATCACACCAGGCCTGAAAAT  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCATTCA-GAGTCAGGCAGAGGCAGATCACACCAGGCCTGAAAAT  799

seq1  GGGACATGGTCGACTTACCACACTTCTGCTCTGGCACCCAGGGCAGGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGGTCGACTTACCACACTTCTGCTCTGGCACCCAGGGCAGGAAG  849

seq1  CAATCGACCATGCCTCTAAGACAGAG-AAGGTAAAGAGTCTCAGAGGCAC  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATCGACCATGCCTCTAAGACAGAGAAAGGTAAAGAGTCTCAGAGGCAC  899

seq1  CCCAAGAGGCAGGGCACATCAGTGAAGTCATG-CCAAAGGTCAATCAATG  948
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  CCCAAGAGGCA-GGCACATCAGTGAAGTCATGCCCAAAGGTCAATCAATG  948

seq1  GTGGAACGGCCTCAGGGCAGGGGCGGGGGGTGGGGGGGGCACCTC  993
      |||||||||||||| |||||||  |||||||||||||||||||||
seq2  GTGGAACGGCCTCA-GGCAGGGCGGGGGGGTGGGGGGGGCACCTC  992


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