BAC Information

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BAC

Clone NameB6Ng01-310K15
Chromosome5 (Build37)
Map Location 33,966,309 - 33,967,382
singlet/doubletsinglet
Overlap gene2410018C17Rik
Upstream geneYes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream geneSlbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310K15.bB6Ng01-310K15.g
ACCGA102581GA102582
length1,0651,175
definitionB6Ng01-310K15.b B6Ng01-310K15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaccccagcaacaatggacaaaaatcaatgattattaccgtt
tccagctaccaactgtggaggtgatttgttatgctgccatagtagcccaa
acaatgccctgttcttctcctggggccagtcaccactcctacaggaaacc
agggaagatggagggctggaatctcatgtgccacacaaggcttgcaaacg
aaaacagtacagactaccaacttagattaccgtccttctttggcagtcac
tgatcagctggggccgaaatgttacatttagatgtcatgctgattctgga
gtgtctggaacaaagccttgtttgggtgccacaaagctggtcttactgat
aaactgtacaagtttttttggaaagcattttcaaaacaaaatgagggaag
gacaaaacctcccccagcaaggcaaatcaaggtcttgatagtatgaaaac
ccatgactagctgacttggccagcagggtgtctatgtaaaaagtgtagag
gagtaaacatcaattcatgtactccctcacaagctcaaaaataaaataaa
ataaaataaaccacactttgggatcaagagatgccaagaagcacttgata
aaatgcaggagacaacctatttgtaataaacacacacagagagacagaga
aacagacagacagacagacagacagaggggcgcgcgcacacatacacaca
caagcagggtcaggtggtggtgcactccattagtcccagcacttgagatg
cagaggcatctctgagtctacagaggcaggttggtctacagaatgagttc
tgggacagccagagctacacagaaaaattgtatcttaaaaaaataaatag
aagctggtgagatggctcagcggttaagagcactgactgctcttctgaag
gtcctgagttcaaatcccagcaaccacatagtggctcacaaccatctgta
acaagatctgacgcctcttctggagtgtctgagacagctacagtgtacta
gatataataaataaataatctttaaagtatactacatagatggaaacaaa
ccccacaagaacaga
gaattctgagctgtcttttggatgtcaacatgtgggcctttctatgccca
ccccagtttcagaataatgacaccaaggcttatatttatttacagtgctt
ttggcattatggtaggattgcctaccacttgctcataactcaattacacc
attatactaatttaagttctgcaaaatggctggtttgttacctcatcaca
gtttcatatttctgacttcctccgagtctgggtgacaaatttcaggtact
cctctttttcccagagttcctctctctttgccaaacttccaccttactat
tctgcctattgctataggccataggcttactattttaaccaaatagatga
tgcctcaggcaggcaaggatggagagaaacacatcttgaaacactgtaca
aaaagatcatttccaacataagtaaaaagcaataaaatctttgttggaac
tattcgtgcaaactgacagtgtcttattcttcctttcataattaaatcag
aaacctgtaggtataaattttctcaacctactttaataggcattcagtct
cctctctggctccgccagaggcagtgggagagaaaggttatcaggatatg
ggagaactggacctgttcagaaatagctcttggaggtgattccaattctg
tgtgttttcagtccagtccactagcaaacaccaaacacaaatcagcagct
acagaccagttcacttagcagaaaccacatatgaaccagcagctgcagtc
ccagtcattcagcagcaccacatatgaatcagcaagagcaattcaatcca
gaagaaacattgaggctcaccaaccagcccgagtcctccacagaagctgc
aagaagccatgggaacctcaaaagaagttcagtgacaagtatctctctat
gacgtcaccataagtgaagctcagcaagccaaacataaagtgaaccaata
tattcatgtcatcagtgaagatacagtacagcaaagtgagccagtgctcg
agctcccactgtctgtgagtcatctctactcttaatactcatcatgcatc
tttaacatgtctgctagcaaacatacttcactgtgtacccagcaaaacat
tcattgaactatgactccaggacaggatctactcgaactttctaataagc
attaatttaactgtttggtgtgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33966309_33967382
seq2: B6Ng01-310K15.b_49_1113

seq1  GAATTCCACACCCCAGCAACAATGGACAAAAATCAATGATTATTACCGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCAGCAACAATGGACAAAAATCAATGATTATTACCGTT  50

seq1  TCCAGCTACCAACTGTGGAGGTGATTTGTTATGCTGCCATAGTAGCCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTACCAACTGTGGAGGTGATTTGTTATGCTGCCATAGTAGCCCAA  100

seq1  ACAATGCCCTGTTCTTCTCCTGGGGCCAGTCACCACTCCTACAGGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCCCTGTTCTTCTCCTGGGGCCAGTCACCACTCCTACAGGAAACC  150

seq1  AGGGAAGATGGAGGGCTGGAATCTCATGTGCCACACAAGGCTTGCAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATGGAGGGCTGGAATCTCATGTGCCACACAAGGCTTGCAAACG  200

seq1  AAAACAGTACAGACTACCAACTTAGATTACCGTCCTTCTTTGGCAGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTACAGACTACCAACTTAGATTACCGTCCTTCTTTGGCAGTCAC  250

seq1  TGATCAGCTGGGGCCGAAATGTTACATTTAGATGTCATGCTGATTCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGCTGGGGCCGAAATGTTACATTTAGATGTCATGCTGATTCTGGA  300

seq1  GTGTCTGGAACAAAGCCTTGTTTGGGTGCCACAAAGCTGGTCTTACTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGAACAAAGCCTTGTTTGGGTGCCACAAAGCTGGTCTTACTGAT  350

seq1  AAACTGTACAAGTTTTTTTGGAAAGCATTTTCAAAACAAAATGAGGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACAAGTTTTTTTGGAAAGCATTTTCAAAACAAAATGAGGGAAG  400

seq1  GACAAAACCTCCCCCAGCAAGGCAAATCAAGGTCTTGATAGTATGAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACCTCCCCCAGCAAGGCAAATCAAGGTCTTGATAGTATGAAAAC  450

seq1  CCATGACTAGCTGACTTGGCCAGCAGGGTGTCTATGTAAAAAGTGTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTAGCTGACTTGGCCAGCAGGGTGTCTATGTAAAAAGTGTAGAG  500

seq1  GAGTAAACATCAATTCATGTACTCCCTCACAAGCTCAAAAATAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAACATCAATTCATGTACTCCCTCACAAGCTCAAAAATAAAATAAA  550

seq1  ATAAAATAAACCACACTTTGGGATCAAGAGATGCCAAGAAGCACTTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAACCACACTTTGGGATCAAGAGATGCCAAGAAGCACTTGATA  600

seq1  AAATGCAGGAGACAACCTATTTGTAATAAACACACACAGAGAGACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGGAGACAACCTATTTGTAATAAACACACACAGAGAGACAGAGA  650

seq1  AACAGACAGACAGACAGACAGACAGAGGGGCGCGCGCACACATACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACAGACAGACAGACAGACAGAGGGGCGCGCGCACACATACACACA  700

seq1  CAAGCAGGGTCAGGTGGTGGTGCACTCCATTAGTCCCAGCACTTGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGGTCAGGTGGTGGTGCACTCCATTAGTCCCAGCACTTGAGATG  750

seq1  CAGAGGCATCTCTGAGTCTACAGAGGCAGGTTGGTCTACAGAATGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCATCTCTGAGTCTACAGAGGCAGGTTGGTCTACAGAATGAGTTC  800

seq1  TGGGACAGCCAGAGCTACACAGAAAAATTGTATCTTAAAAAAATAAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGCCAGAGCTACACAGAAAAATTGTATCTTAAAAAAATAAATAG  850

seq1  AAGCTGGTGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCTGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCTGAAG  900

seq1  GTCCTGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCATCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCATCTGTA  950

seq1  ACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAGGACAGCTACAGTGTAC  1000
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ACAAGATCTGACG-CCTCTTCTGGAGTGTCTGA-GACAGCTACAGTGTAC  998

seq1  TTAGATATAATAAATAAATAAATCTTTAAAAAAATATACATACATAGATG  1050
       |||||||||||||||||| |||||||   ||| ||||| ||||||||||
seq2  -TAGATATAATAAATAAAT-AATCTTT---AAAGTATAC-TACATAGATG  1042

seq1  GAAACAAAACCCCACAGGAACAGA  1074
      ||||| |||||||||| |||||||
seq2  GAAAC-AAACCCCACAAGAACAGA  1065