BAC Information

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BAC

Clone NameB6Ng01-311I24
Chromosome5 (Build37)
Map Location 59,064,291 - 59,065,421
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh7, LOC100041385
Downstream geneLOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311I24.bB6Ng01-311I24.g
ACCGA103250GA103251
length1,130808
definitionB6Ng01-311I24.b B6Ng01-311I24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaaacatgatactaattttgcctttttgttttcctgtatagat
tataatattctcatcacatttttgaatgagcatactaggtaccaatttat
aaattatcagttagagacagagacaatgtttacattgctgatattgttta
tcaatgtttatgataaatgattgatccattatcaagcacatggaagtaca
tgaaaatagatatgatggtaaatgtctgtaaggtcaaccattcagaaggc
aggatggtgatcgaggaaaacaagagtaaatgagtttgaaaatatagttg
gacctggccataaatagtaacctatgtaaataaaactccaagaaagtata
taataagtaactaaatattaatgaattcatcaataagaaaaaggagttaa
tgaggccttgagtagtcagaaaatgaatttgtataactgatcattttata
caaccaaaaataatgttgacattcaaagagctggaaaacaaatggaaatg
aagagagttctccaatgaatgagttcacaaatgaaagctcatcaaattct
atggggttttcatcagacaatgggaaataagttaagtatagagtaataac
tttgtgtgaaaaatcaagtcagacatattttataggatctaactacaaag
ggtaataaaatgtggtaagcattttttttttcttctcatagactaaggga
aaggcattgaaatgcgatccttggagagaacgtatcttggcaaaagcagt
agtttaaagaagtagtttaaagtagtttaaagactagtagcattctgggt
agctttctgtcctggagccattgtagagtgaactgcaagattttttttat
gtgtcagataatgtaaagctatgtgtagatctcggatttgacattttgcc
taatctggatgcttctaaaatatttagctaagttgtaaataaaaaatata
cttttaaaaatatttcatacttgtccttttactacattttgattttttaa
tctgtatcataaaagtcttatacattttctctgattagccaagtagaaat
atgtgttaaattattatacataggaggaatgtaatggaatggaagttatc
cagatacattgtgacagaggctaactcatg

gaattctacccaagtggatcctggcttggcatcgggaaagaatgagctgg
gataggtgccctcgctgtggcccttgttttggcatgcatgtatgcatgtt
gtgtgtatggtgtatgtgttggttgcaggatgcccaggtccaaactgccg
ccatggtggtgcaagcttttgccacagtggaagcagggcagtcacctcag
atttggtttgctgccatgaagaatgaacaatgaagccatcattccatagg
gttgtaaggctaagccctgcacagaggttagtctggaagctgtttgatga
tctctgggaggtatgtctgattgcataagggttgagtgtcctagtgtcct
tcccccagaaaaaacggcacaggagcaggtcagggttgctctgggtaaaa
acctgtgagcctaagagtcaatcctgtacatgtccctatttctgcacact
ggggaccaaacctctatcttcacccaggaagtttgttcaaaaaaaatata
aaagggggaattgtgggaagccattcagactccctggccagccagacaga
aatctattccaggcacccacacaagcccatgtttggtggatggcccaccc
ttaatccctgattggctgagcaagcctgcctggtgaggtgatgtgacctg
tggtgattggtgtggggcatggttgtggctggagtgggagaaaaacactt
gtaaacagagaggcgggggattgaagagagaagcttccctaagttaactt
tttagaagacccggtgggttgcgcttttctcttgcctggtgagtttggat
gtaactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_59064291_59065421
seq2: B6Ng01-311I24.b_46_1175 (reverse)

seq1  CATGA-TTAG-CTCTGTCACCATGTATCTGGATAACTTCTAT--CATTAC  46
      ||||| |||| ||||||||| |||||||||||||||||| ||  ||||||
seq2  CATGAGTTAGCCTCTGTCACAATGTATCTGGATAACTTCCATTCCATTAC  50

seq1  ATTTCTTCTTATGTATTATAATTT-ACACATATTTCTACTTGGCTAATTC  95
      | ||| || ||||||| ||||||| |||||||||||||||||||||| ||
seq2  A-TTCCTCCTATGTATAATAATTTAACACATATTTCTACTTGGCTAA-TC  98

seq1  AGAGAAAATGTTATAGACTTTTATGATACAGATTAAAAAATCAAAATGGT  145
      |||||||||||   ||||||||||||||||||||||||||||||||| ||
seq2  AGAGAAAATGTATAAGACTTTTATGATACAGATTAAAAAATCAAAAT-GT  147

seq1  AGGTAAAAGGACAAGTATGAAATATTTTTTAAAAAGTATATTTTTTATTT  195
      | |||||||||||||||||||||||||||  |||||||||||||||| ||
seq2  A-GTAAAAGGACAAGTATGAAATATTTTT--AAAAGTATATTTTTTA-TT  193

seq1  TACAACTTAGCTAAATATTTTAGAAGCATCCAGATTAGGCAAAATGTCAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTTAGCTAAATATTTTAGAAGCATCCAGATTAGGCAAAATGTCAA  243

seq1  ATCCGAGATCTACACATAGCTTTACATTATCTGACACATAAAAAAAATCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGAGATCTACACATAGCTTTACATTATCTGACACATAAAAAAAATCT  293

seq1  TGCAGTTCACTCTACAATGGCTCCAGGACAGAAAGCTACCCAGAATGCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTCACTCTACAATGGCTCCAGGACAGAAAGCTACCCAGAATGCTA  343

seq1  CTAGTCTTTAAACTACTTTAAACTACTTCTTTAAACTACTGCTTTTGCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTTTAAACTACTTTAAACTACTTCTTTAAACTACTGCTTTTGCCA  393

seq1  AGATACGTTCTCTCCAAGGATCGCATTTCAATGCCTTTCCCTTAGTCTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACGTTCTCTCCAAGGATCGCATTTCAATGCCTTTCCCTTAGTCTAT  443

seq1  GAGAAG-AAAAAAAAATGCTTACCACATTTTATTACCCTTTGTAGTTAGA  494
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAAAAAAAAATGCTTACCACATTTTATTACCCTTTGTAGTTAGA  493

seq1  TCCTATAAAATATGTCTGACTTGATTTTTCACACAAAGTTATTACTCTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAAATATGTCTGACTTGATTTTTCACACAAAGTTATTACTCTAT  543

seq1  ACTTAACTTATTTCCCATTGTCTGATGAAAACCCCATAGAATTTGATGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTTATTTCCCATTGTCTGATGAAAACCCCATAGAATTTGATGAG  593

seq1  CTTTCATTTGTGAACTCATTCATTGGAGAACTCTCTTCATTTCCATTTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTTGTGAACTCATTCATTGGAGAACTCTCTTCATTTCCATTTGT  643

seq1  TTTCCAGCTCTTTGAATGTCAACATTATTTTTGGTTGTATAAAATGATCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTCTTTGAATGTCAACATTATTTTTGGTTGTATAAAATGATCA  693

seq1  GTTATACAAATTCATTTTCTGACTACTCAAGGCCTCATTAACTCCTTTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAAATTCATTTTCTGACTACTCAAGGCCTCATTAACTCCTTTTT  743

seq1  CTTATTGATGAATTCATTAATATTTAGTTACTTATTATATACTTTCTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGATGAATTCATTAATATTTAGTTACTTATTATATACTTTCTTGG  793

seq1  AGTTTTATTTACATAGGTTACTATTTATGGCCAGGTCCAACTATATTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTACATAGGTTACTATTTATGGCCAGGTCCAACTATATTTTC  843

seq1  AAACTCATTTACTCTTGTTTTCCTCGATCACCATCCTGCCTTCTGAATGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTTACTCTTGTTTTCCTCGATCACCATCCTGCCTTCTGAATGG  893

seq1  TTGACCTTACAGACATTTACCATCATATCTATTTTCATGTACTTCCATGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTACAGACATTTACCATCATATCTATTTTCATGTACTTCCATGT  943

seq1  GCTTGATAATGGATCAATCATTTATCATAAACATTGATAAACAATATCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATAATGGATCAATCATTTATCATAAACATTGATAAACAATATCAG  993

seq1  CAATGTAAACATTGTCTCTGTCTCTAACTGATAATTTATAAATTGGTACC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAACATTGTCTCTGTCTCTAACTGATAATTTATAAATTGGTACC  1043

seq1  TAGTATGCTCATTCAAAAATGTGATGAGAATATTATAATCTATACAGGAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGCTCATTCAAAAATGTGATGAGAATATTATAATCTATACAGGAA  1093

seq1  AACAAAAAGGCAAAATTAGTATCATGTTTTAGAATTC  1131
      |||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGGCAAAATTAGTATCATGTTTTAGAATTC  1130


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