BAC Information

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BAC

Clone NameB6Ng01-312C22
Chromosome5 (Build37)
Map Location 30,968,704 - 31,107,236
singlet/doubletdoublet
Overlap geneCenpa, Dpysl5
Upstream geneUbe3c, LOC100039363, EG332993, Dnajb6, EG433865, LOC100039405, LOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik
Downstream geneMapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312C22.bB6Ng01-312C22.g
ACCGA103714GA103715
length1,1571,060
definitionB6Ng01-312C22.b B6Ng01-312C22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,106,074 - 31,107,236)(30,968,704 - 30,969,771)
sequence
gaattctctttcatttatttaggttttttaaacatttccaacagttccat
gtgtttcagagcacaattgtacctgtatcaataaacactttatagtttat
aagtttaaaaatatttactttacctgtatgtgtgcacaactgtatgtgca
tatctgtaggcaaccattgtagggtgtcatattccctcaacctgctgtcc
catgtggtttcaagctgccccactggggctggggactgaatctgggtcct
ctctgagagaagccagtgccactgggtcatctttccagccctcaccttct
tctttttgatgctactctgactggaattgctttcttaatttcacttttga
attggacaagtctcattctacaccagaaggaaaggaccttgcatgcaccc
ttcacacagatatgtgcttctacgctgtatgtaaggtcccgtgtgtgcac
acattgctgaaaaagttctccctccatggtagacagtcttgcacataaca
gacaagaagatgtgtgtattatatcttaaaaacttactgttgagagacag
agacaagacaaagtgtatgccttgtgtgagtccatgaattagtgttcaac
tcaagacaatgctcatttttcggggacatagttattatccatggggtggg
ggcactgatacgacaggagagtcacagagctgatttcccaggccctggca
gtgttctgtctccagctgtacattggtttagtacagatttatcaagttgt
gaacttagatctggcaggttgtttgtataacttacacgcagacatttgag
agaacgatgtcatggaaacaggttaagactggactacatcattgaatacc
tgacccatcagatgtagtgtgtcaacaaccattcccagactctttctgaa
tttccttttagccacaatgcccactttccttttgcaagtacccttccttg
agttttaaaatggtccgtttctccacccacacaagatatttcctggagag
gggcttagttacacccaggtataacagaaaggctatatatttgatattaa
agattgagtgtaacagtgattaggctctacttgctgtgatccttctgtct
gccatttggaactcagttcagaatctacaagtggccatctgttcctggac
attcaca
gaattcatattactcccgggagaaaaggaaaagccggtttttttctcagg
caattctgtcattgtgtttgatagcatggtccaataatagtgctggcgcc
tgccctgcctggaccttgtcctcagattcctccgtcctggctgtccccac
gaccctatcttctgaaaaggtcatgcagttaaccaggcttctgaatcata
tttgctggttgctttcaggagtgtcacgggtgctgtgtggagctgtcaca
ttcttgggcatctgtttccgtatttttaaagccacctcaacgtttgatag
aaaagcataaaacttttgaggaagtgagctctacaaacccaccacccacg
taagaactgagccgtcctgcccagagggcatctgaaaaagagatcaacag
gaaaagggtggggaaatcctgccttccttcccgtcttcaagtacccattg
gcttcagacctttattctcattggtttatctggatgtcgctccacgctgg
ctttccagaaccagccactgagagtcacaaagttgggatttaaaagatgc
ggtgggaggggcgggtgattttttgaactgctggcgaccgagttctggcg
gtcctgacgcgcaccttgggcttgctcgcgttcggtttcggcagcaggac
caagaaggcttagggaaggcggcgggacccggcccctcgaggccagccat
gggcccgcgtcgcaaaccgcagaccccaaggaggagaccctccagcccgg
cgcctggaccctcgcgacagagctccagtgtaggtaagcgagcctgccct
gcacctccgaggccggtgcggtcatcctgtggggccgggcctgtagaggg
acggttcctggtcacggcttgccgctaacctcgcgtaggggtaatgggtt
tttttgtttatttggtttgtttgtttgctgtttgtccctgaccggtttac
agcaggagaaaacgaatgcagacaagacaaggagttggagcaagaacaac
tcatctgacggacacggggtcttttttgcataattaccttgcatgtattt
gcattaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31106074_31107236
seq2: B6Ng01-312C22.b_46_1202 (reverse)

seq1  TGTGAAATGCTCCAGGAAACAGATGGCCACTTGTAGA-TCTG-ACTGAAG  48
      |||| |||| |||||| |||||||||||||||||||| |||| |||| ||
seq2  TGTG-AATG-TCCAGG-AACAGATGGCCACTTGTAGATTCTGAACTG-AG  46

seq1  TTCAAAAT-GCAGACAGAGGGGCCACAGCAAGTAGAAGCCTAATCACTGT  97
      ||| |||| ||||||||| ||  |||||||||||| ||||||||||||||
seq2  TTCCAAATGGCAGACAGAAGGATCACAGCAAGTAG-AGCCTAATCACTGT  95

seq1  TACACTTCAATTCTTTAATTATCAAATATATAGCCTTTCTGTTATACCTG  147
      ||||| |||| ||||||| |||||||||||||||||||||||||||||||
seq2  TACAC-TCAA-TCTTTAA-TATCAAATATATAGCCTTTCTGTTATACCTG  142

seq1  GGTGTAAACTAAGCCCCTCTCCAGGAAATATCTTGTGGTGGGTGGAGAAA  197
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTGT-AACTAAGCCCCTCTCCAGGAAATATCTTGT-GTGGGTGGAGAAA  190

seq1  CGGACCATTTTAAAACTCAAGGAAGGGTACTTGCAAAAGG-AAGTGGGCA  246
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CGGACCATTTTAAAACTCAAGGAAGGGTACTTGCAAAAGGAAAGTGGGCA  240

seq1  TTGTGGCTAAAAGGAAATTCAGAAAGAGTCTGGGAATGGTTGTTGACACA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTAAAAGGAAATTCAGAAAGAGTCTGGGAATGGTTGTTGACACA  290

seq1  CTACATCTGATGGGTCAGGTATTCAATGATGTAGTCCAGTCTTAACCTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTGATGGGTCAGGTATTCAATGATGTAGTCCAGTCTTAACCTGT  340

seq1  TTCCATGACATCGTTCTCTCAAATGTCTGCGTGTAAGTTATACAAACAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGACATCGTTCTCTCAAATGTCTGCGTGTAAGTTATACAAACAAC  390

seq1  CTGCCAGATCTAAGTTCACAACTTGATAAATCTGTACTAAACCAATGTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGATCTAAGTTCACAACTTGATAAATCTGTACTAAACCAATGTAC  440

seq1  AGCTGGAGACAGAACACTGCCAGGGCCTGGGAAATCAGCTCTGTGACTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGACAGAACACTGCCAGGGCCTGGGAAATCAGCTCTGTGACTCT  490

seq1  CCTGTCGTATCAGTGCCCCCACCCCATGGATAATAACTATGTCCCCGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGTATCAGTGCCCCCACCCCATGGATAATAACTATGTCCCCGAAA  540

seq1  AATGAGCATTGTCTTGAGTTGAACACTAATTCATGGACTCACACAAGGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATTGTCTTGAGTTGAACACTAATTCATGGACTCACACAAGGCA  590

seq1  TACACTTTGTCTTGTCTCTGTCTCTCAACAGTAAGTTTTTAAGATATAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTGTCTTGTCTCTGTCTCTCAACAGTAAGTTTTTAAGATATAAT  640

seq1  ACACACATCTTCTTGTCTGTTATGTGCAAGACTGTCTACCATGGAGGGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTTCTTGTCTGTTATGTGCAAGACTGTCTACCATGGAGGGAG  690

seq1  AACTTTTTCAGCAATGTGTGCACACACGGGACCTTACATACAGCGTAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTCAGCAATGTGTGCACACACGGGACCTTACATACAGCGTAGAA  740

seq1  GCACATATCTGTGTGAAGGGTGCATGCAAGGTCCTTTCCTTCTGGTGTAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATCTGTGTGAAGGGTGCATGCAAGGTCCTTTCCTTCTGGTGTAG  790

seq1  AATGAGACTTGTCCAATTCAAAAGTGAAATTAAGAAAGCAATTCCAGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACTTGTCCAATTCAAAAGTGAAATTAAGAAAGCAATTCCAGTCA  840

seq1  GAGTAGCATCAAAAAGAAGAAGGTGAGGGCTGGAAAGATGACCCAGTGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCATCAAAAAGAAGAAGGTGAGGGCTGGAAAGATGACCCAGTGGC  890

seq1  ACTGGCTTCTCTCAGAGAGGACCCAGATTCAGTCCCCAGCCCCAGTGGGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTCTCTCAGAGAGGACCCAGATTCAGTCCCCAGCCCCAGTGGGG  940

seq1  CAGCTTGAAACCACATGGGACAGCAGGTTGAGGGAATATGACACCCTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAAACCACATGGGACAGCAGGTTGAGGGAATATGACACCCTACA  990

seq1  ATGGTTGCCTACAGATATGCACATACAGTTGTGCACACATACAGGTAAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCCTACAGATATGCACATACAGTTGTGCACACATACAGGTAAAG  1040

seq1  TAAATATTTTTAAACTTATAAACTATAAAGTGTTTATTGATACAGGTACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTTTAAACTTATAAACTATAAAGTGTTTATTGATACAGGTACA  1090

seq1  ATTGTGCTCTGAAACACATGGAACTGTTGGAAATGTTTAAAAAACCTAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTCTGAAACACATGGAACTGTTGGAAATGTTTAAAAAACCTAAA  1140

seq1  TAAATGAAAGAGAATTC  1163
      |||||||||||||||||
seq2  TAAATGAAAGAGAATTC  1157

seq1: chr5_30968704_30969771
seq2: B6Ng01-312C22.g_67_1126

seq1  GAATTCATATTACTCCCGGGAGAAAAGGAAAAGCCGGTTTTTTTCTCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTACTCCCGGGAGAAAAGGAAAAGCCGGTTTTTTTCTCAGG  50

seq1  CAATTCTGTCATTGTGTTTGATAGCATGGTCCAATAATAGTGCTGGCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTCATTGTGTTTGATAGCATGGTCCAATAATAGTGCTGGCGCC  100

seq1  TGCCCTGCCTGGACCTTGTCCTCAGATTCCTCCGTCCTGGCTGTCCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCCTGGACCTTGTCCTCAGATTCCTCCGTCCTGGCTGTCCCCAC  150

seq1  GACCCTATCTTCTGAAAAGGTCATGCAGTTAACCAGGCTTCTGAATCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTATCTTCTGAAAAGGTCATGCAGTTAACCAGGCTTCTGAATCATA  200

seq1  TTTGCTGGTTGCTTTCAGGAGTGTCACGGGTGCTGTGTGGAGCTGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGTTGCTTTCAGGAGTGTCACGGGTGCTGTGTGGAGCTGTCACA  250

seq1  TTCTTGGGCATCTGTTTCCGTATTTTTAAAGCCACCTCAACGTTTGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGCATCTGTTTCCGTATTTTTAAAGCCACCTCAACGTTTGATAG  300

seq1  AAAAGCATAAAACTTTTGAGGAAGTGAGCTCTACAAACCCACCACCCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATAAAACTTTTGAGGAAGTGAGCTCTACAAACCCACCACCCACG  350

seq1  TAAGAACTGAGCCGTCCTGCCCAGAGGGCATCTGAAAAAGAGATCAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACTGAGCCGTCCTGCCCAGAGGGCATCTGAAAAAGAGATCAACAG  400

seq1  GAAAAGGGTGGGGAAATCCTGCCTTCCTTCCCGTCTTCAAGTACCCATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGTGGGGAAATCCTGCCTTCCTTCCCGTCTTCAAGTACCCATTG  450

seq1  GCTTCAGACCTTTATTCTCATTGGTTTATCTGGATGTCGCTCCACGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGACCTTTATTCTCATTGGTTTATCTGGATGTCGCTCCACGCTGG  500

seq1  CTTTCCAGAACCAGCCACTGAGAGTCACAAAGTTGGGATTTAAAAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGAACCAGCCACTGAGAGTCACAAAGTTGGGATTTAAAAGATGC  550

seq1  GGTGGGAGGGGCGGGTGATTTTTTGAACTGCTGGCGACCGAGTTCTGGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGGGCGGGTGATTTTTTGAACTGCTGGCGACCGAGTTCTGGCG  600

seq1  GTCCTGACGCGCACCTTGGGCTTGCTCGCGTTCGGTTTCGGCAGCAGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACGCGCACCTTGGGCTTGCTCGCGTTCGGTTTCGGCAGCAGGAC  650

seq1  CAAGAAGGCTTAGGGAAGGCGGCGGGACCCGGCCCCTCGAGGCCAGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGCTTAGGGAAGGCGGCGGGACCCGGCCCCTCGAGGCCAGCCAT  700

seq1  GGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCGCGTCGCAAACCGCAGACCCCAAGGAGGAGACCCTCCAGCCCGG  750

seq1  CGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGGTAAGCGAGCCTGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGACCCTCGCGACAGAGCTCCAGTGTAGGTAAGCGAGCCTGCCCT  800

seq1  GCACCTCCGAGGCCGGTGCGGTCATCCTGTGGGGCCGGGCCTGTAGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCGAGGCCGGTGCGGTCATCCTGTGGGGCCGGGCCTGTAGAGGG  850

seq1  ACGGTTCCTGGTCACGGCTTGCCGCTAACCTCGCGTAGGGGTAAT-GGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACGGTTCCTGGTCACGGCTTGCCGCTAACCTCGCGTAGGGGTAATGGGTT  900

seq1  TTTTTGTTTATTT-GTTTGTTTGTTTGCTTGTTTGTTCCTGACCGGTTTA  948
      ||||||||||||| |||||||||||||| ||||||| |||||||||||||
seq2  TTTTTGTTTATTTGGTTTGTTTGTTTGC-TGTTTGTCCCTGACCGGTTTA  949

seq1  CAGCAGGGAGAAAAACGAAATGCAGACAAGACAAGGAGTTGGAGCAAAGA  998
      ||||| |||| |||||| ||||||||||||||||||||||||||| ||||
seq2  CAGCA-GGAG-AAAACG-AATGCAGACAAGACAAGGAGTTGGAGC-AAGA  995

seq1  CAAACTCATTCTGACGGACACGGGGTCTTTTTTTGCATTTATTTACTTTG  1048
        |||||| |||||||||||||||||| |||||||||  || |||| |||
seq2  ACAACTCA-TCTGACGGACACGGGGTC-TTTTTTGCA--TAATTACCTTG  1041

seq1  CATGTATTTTGCATTTATTT  1068
      |||||| |||||||| ||||
seq2  CATGTA-TTTGCATTAATTT  1060