BAC Information

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BAC

Clone NameB6Ng01-312H18
Chromosome5 (Build37)
Map Location 60,376,724 - 60,377,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666499, EG625870, LOC100041425
Downstream geneLOC546866, Cbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312H18.bB6Ng01-312H18.g
ACCGA103941GA103942
length1,1951,077
definitionB6Ng01-312H18.b B6Ng01-312H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagcccatacctaaacatagtaaatgcaatatacagcaaaccag
tagctaatatcaaactaaatggagagaaacttgaagcaattccactaaaa
tcagggattagacttggctgtccagtctctctctacctgctaaatatcgt
actcaaaatcctagtcagaacaattagacaacaaaaggaggtcaaaggga
tacaaattggaaaggaagaagtcaaaatagcactatttgcagatgatagg
atattatacttaagtgactcaaaaattccaccatactactgctaaacctg
ataaacaaattcagcaaagtggttgtatataaatttaacccaaacaaatc
agtgaccttcctttactcaaaggataaacaagctaagaaagaaattagag
aaacaacacccttcaaactagtcacaaataataaaaataccttggtgtga
ctttaagtaagtgaaagatctgtatgataagaacttcaagctctcaagga
agaaatcaaagaaaatctcagaagatgaaaagatctcccatgttcatgga
ttggcaggattaatatagtaaaaatggccattatggagaaagcaatctac
agattcaaaacaatccccatgaaaattccaactcagttcttcatagagtt
agcaagagctattttcaaattcatctggaataacaaaaacgtaggatagc
aaaaaactagtcttaataataaaagaacttcttgggaattgacaagatgt
actacagagaaattgtgattaaaacatgcatggtattggtacagtgatag
gctggtagattaaggtaatagaagtgaagacacagatgaaccaagatgcc
aatggtcacatgatctttgacaaagaaactaaaatcatccagtggaaaaa
agatagctttttcaacaaatgatgttgggttcaactgaaagttagcatgt
agaagaatgaaaattgatctattcctatctccttgcacaaacctcaagtc
caagtgggataaagtatctccaaataaaaccagatacactgaaactaata
gagagaaaggagctaagagactcaccacatgggcacaggggaaaaaatcc
ttgaacagattacatagcatattgcctctaagctcacactgtccatatca
ccgccaaatgcaaaattgaatggccaaagagaacaccttgtttca
gaattcttttcctccagatgggttgccttatctaatatttgattgataat
ttttgcttaatcttatatttaattctgtccatgtttggttgatatcaatt
caaatgagagacagaaagggaatggattcagaagaaatgttgggaggaac
agggagaagcaggaggggagatgataatcagtatgtttcacgagaaagta
atctattttcaagaaaagtgaagaataaatttcttttcacagtaagaagg
aaaaaaaggtgatggagactgaaccaatgaaagggaggtaggtaggggag
cacctatggtagtgacttgaagaaattactttcttgttgccatttgacta
cagatatttaaccatagagaactgaagcagaagtaaatcattttggaatg
gatgtacaagtagtattgaagaaacaacgtctttatccaacttctttatt
cctttcctccccagaacttccccctcaacctctgcagaggtgtcaggagt
agacatgctttatgatgtataagccattctattgctgttactggctgctg
gtggtagtggtgggtgctacttgtcagccacaccaaattggatggtggtg
tcctacactaatcatggggggcaatttgcagaagacaggtaactggagca
gatccctggaagagttaaacccgaaggaagaagcctgcataccagagaat
gccaacaatcaactgccagccgaaacatctgaacagccaggcccagatgc
caacagacaaagagaaatggagtgctccagtcacctaacagtcaggaaga
ataacaaagacaaactagtgaaagatgataaaacacttaggaagaaacca
ggaagaaacacctttcagttgccacccgcctgcccaagaaactataagag
aacagtaagaccaacaatatttttatgttctcacaagacaaataatgcaa
agaattaaaaccccaccatagccaaaacaaaaaacgtttgggatatgaaa
cattccagttgacctcctggtggatcgagaaaagtgtgagccctgggtta
gaaacttagaacaagctacagcagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60376724_60377796
seq2: B6Ng01-312H18.g_67_1143 (reverse)

seq1  AAACTGCTGTAGCTTGTTCTAAGTTTCTAACCCAGGCTTCACAC-TTTCT  49
      ||||||||||||||||||||||||||||||||||||  |||||| |||||
seq2  AAACTGCTGTAGCTTGTTCTAAGTTTCTAACCCAGGGCTCACACTTTTCT  50

seq1  CGATCCA-CAGGAGGTCACTTGGAATGGTTTCATATCCC-AACGTTTTTT  97
      ||||||| ||||||||||  |||||| |||||||||||| ||||||||||
seq2  CGATCCACCAGGAGGTCAACTGGAAT-GTTTCATATCCCAAACGTTTTTT  99

seq1  GTTTTGGCTATGGTGGG--TTTTATTCTTTGCATTATTTGTCTTGTGAGA  145
      |||||||||||||||||  ||| |||||||||||||||||||||||||||
seq2  GTTTTGGCTATGGTGGGGTTTTAATTCTTTGCATTATTTGTCTTGTGAGA  149

seq1  ACATAAAAATATTGTTGGTCTTACTGTTCTCTTATAGTTTCTTGGGCAGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAAATATTGTTGGTCTTACTGTTCTCTTATAGTTTCTTGGGCAGG  199

seq1  CGGGTGGCAACTGAAAGGTGTTTCTTCCTGGTTTCTTCCTAAGTGTTTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGGCAACTGAAAGGTGTTTCTTCCTGGTTTCTTCCTAAGTGTTTTA  249

seq1  TCATCTTTCACTAGTTTGTCTTTGTTATTCTTCCTGACTGTTAGGTGACT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTCACTAGTTTGTCTTTGTTATTCTTCCTGACTGTTAGGTGACT  299

seq1  GGAGCACTCCATTTCTCTTTGTCTGTTGGCATCTGGGCCTGGCTGTTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACTCCATTTCTCTTTGTCTGTTGGCATCTGGGCCTGGCTGTTCAG  349

seq1  ATGTTTCGGCTGGCAGTTGATTGTTGGCATTCTCTGGTATGCAGGCTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCGGCTGGCAGTTGATTGTTGGCATTCTCTGGTATGCAGGCTTCT  399

seq1  TCCTTCGGGTTTAACTCTTCCAGGGATCTGCTCCAGTTACCTGTCTTCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGGGTTTAACTCTTCCAGGGATCTGCTCCAGTTACCTGTCTTCTG  449

seq1  CAAATTGCCCCCCATGATTAGTGTAGGACACCACCATCCAATTTGGTGTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGCCCCCCATGATTAGTGTAGGACACCACCATCCAATTTGGTGTG  499

seq1  GCTGACAAGTAGCACCCACCACTACCACCAGCAGCCAGTAACAGCAATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAAGTAGCACCCACCACTACCACCAGCAGCCAGTAACAGCAATAG  549

seq1  AATGGCTTATACATCATAAAGCATGTCTACTCCTGACACCTCTGCAGAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTATACATCATAAAGCATGTCTACTCCTGACACCTCTGCAGAGG  599

seq1  TTGAGGGGGAAGTTCTGGGGAGGAAAGGAATAAAGAAGTTGGATAAAGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGGGAAGTTCTGGGGAGGAAAGGAATAAAGAAGTTGGATAAAGAC  649

seq1  GTTGTTTCTTCAATACTACTTGTACATCCATTCCAAAATGATTTACTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCTTCAATACTACTTGTACATCCATTCCAAAATGATTTACTTCT  699

seq1  GCTTCAGTTCTCTATGGTTAAATATCTGTAGTCAAATGGCAACAAGAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTTCTCTATGGTTAAATATCTGTAGTCAAATGGCAACAAGAAAG  749

seq1  TAATTTCTTCAAGTCACTACCATAGGTGCTCCCCTACCTACCTCCCTTTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTCAAGTCACTACCATAGGTGCTCCCCTACCTACCTCCCTTTC  799

seq1  ATTGGTTCAGTCTCCATCACCTTTTTTTCCTTCTTACTGTGAAAAGAAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCAGTCTCCATCACCTTTTTTTCCTTCTTACTGTGAAAAGAAAT  849

seq1  TTATTCTTCACTTTTCTTGAAAATAGATTACTTTCTCGTGAAACATACTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCACTTTTCTTGAAAATAGATTACTTTCTCGTGAAACATACTG  899

seq1  ATTATCATCTCCCCTCCTGCTTCTCCCTGTTCCTCCCAACATTTCTTCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCTCCCCTCCTGCTTCTCCCTGTTCCTCCCAACATTTCTTCTG  949

seq1  AATCCATTCCCTTTCTGTCTCTCATTTGAATTGATATCAACCAAACATGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTCCCTTTCTGTCTCTCATTTGAATTGATATCAACCAAACATGG  999

seq1  ACAGAATTAAATATAAGATTAAGCAAAAATTATCAATCAAATATTAGATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAAATATAAGATTAAGCAAAAATTATCAATCAAATATTAGATA  1049

seq1  AGGCAACCCATCTGGAGGAAAAGAATTC  1073
      ||||||||||||||||||||||||||||
seq2  AGGCAACCCATCTGGAGGAAAAGAATTC  1077