BAC Information

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BAC

Clone NameB6Ng01-312O08
Chromosome5 (Build37)
Map Location 5,546,712 - 5,705,851
singlet/doubletdoublet
Overlap geneGtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12
Downstream geneSteap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312O08.bB6Ng01-312O08.g
ACCGA104252GA104253
length1,1391,151
definitionB6Ng01-312O08.b B6Ng01-312O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,546,712 - 5,547,856)(5,704,945 - 5,705,851)
sequence
gaattcattacctttatgtatgtatttatttatgtgggggaaggacttgt
gcatggagtggtatgcatgtggaggtcagagaatacctacaggactcagt
tctctccttctaccacatgtaaagctgaatggtccggcttagcagcaagt
acctttacctactaagccaccacacagaacccggtaaagttctcatctga
gctattcttatgccttccatttctatactagccctctcctaggacctttt
gtctttccttctatcaaggctaatctggcttgtcaacttgactgccattc
tgtggggttttgtttaataatagcaaatactgtatcactgtcacccaatc
cctttagcgcaatctttcactgcatctcatcgagctactgcactagcatc
ctaactactctttccagattccttagtgctttgtaccagccagtctctat
agtataggctgagaacgttgggaagcctgttttatcccttccacagtctt
atgtttaagatgcttagtaagatgaaagaccacccatgtagtctatggaa
tttgatcagattttaatctcacttcctccctccgacacattctctagaca
aacacatttcctgtaactactgagctgagctgtgtataggctcttttcat
gacttaaagatctgttatctctagtctaaagctctgattaatcataatta
ttgtgcgtatctctgcccaagcacagttcctcaggaaggtctacctatag
cagttacttttgctctttaacactttccttcccctatatttatcagtgat
gtgcacacacacacattcctttctccctagtctgtaataagtaatctcac
aacattgctttaccagttttactagcggcatagcctaatatggttcctag
aaaaaattccttataaaattagtaaaaatgtttatctctgtcttcccagt
ttttatcataatgtataacacatgcttaagtagcgttaaaatcctatagt
aaccaatgaaagtgatgtgcactgtgaaagaaatgcagtgatgttcctga
caggacaagagactttgtgagactgtagtggtcttggaaagtaaaagaaa
tgcatggattctactgcgaagcttccaattaaaggctaa

gaattcaattcccagtgctagcaaggcagcttacaaccttctctaactct
agtcccaaggaatccaatgccctcttctggcctcctcaggcacccggcac
acacatgatgcacagacatacatgcagaatgcccacacaggtaaaataaa
taaaaattcaaaataaatgactaaatgtaattgtaaaaccttaaaaatac
tttgataatgtatgcatgcacacaatgtattttgagtatattcaccccat
ttcttccactaccttgtttcagagccaccctgatcagacaatatatagaa
ctattaaagtgcttgcactgagtatggtccaagtcacctccctatagaaa
ctatgcctgtttactggacttaatacacatgctaaaacacacttcatagt
gacgcacctctcttattttttttttcctgtgatgtcatgggctttcatca
cggcactttggaggcagaggcaggtggacttttatgaaagatatggtctg
aacggattgtttttctctctcaagtgctaaatagataatgatttattatt
gttagagttcaggaatcactgaaggaagaccccagactcaaacagtatgc
aagaacaaagggaatttattctgcagaaccaaccaccatgctggggtcac
caccacatcaaaaatggtgatagccccagacaaaagcatgcagccttctt
atagggaactggagggggactctctagaaggattaggtaatctctaatgt
gactggtagggggccaaagccctgacagtagtacaattttaattggttac
tatgttaagggttaggcaatctataacttcattggtaggtgcagggatgt
tccagatgggctgcagtcctgcatcacgaatgattaacccccagatgggc
tgcccagcacagatgggcctgtcctgagatcagatagctcccattcatgt
ggctgtctcaggcttgtcctcgggtgggggattttattgccttgttcctg
gacttttgcagtctgcagctggttttctgagtgtagacaaaatagaatga
ttgaacccctttcatcatatagataatgattttttataattaatggaaca
ccgtgttgctaggcagacctaatgccttgttacagctttctaagacaaac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5546712_5547856
seq2: B6Ng01-312O08.b_49_1187

seq1  GAATTCATTACCTTTATGTATGTATTTATTTATGTGGGGGAAGGACTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTTTATGTATGTATTTATTTATGTGGGGGAAGGACTTGT  50

seq1  GCATGGAGTGGTATGCATGTGGAGGTCAGAGAATACCTACAGGACTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAGTGGTATGCATGTGGAGGTCAGAGAATACCTACAGGACTCAGT  100

seq1  TCTCTCCTTCTACCACATGTAAAGCTGAATGGTCCGGCTTAGCAGCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTTCTACCACATGTAAAGCTGAATGGTCCGGCTTAGCAGCAAGT  150

seq1  ACCTTTACCTACTAAGCCACCACACAGAACCCGGTAAAGTTCTCATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTACCTACTAAGCCACCACACAGAACCCGGTAAAGTTCTCATCTGA  200

seq1  GCTATTCTTATGCCTTCCATTTCTATACTAGCCCTCTCCTAGGACCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCTTATGCCTTCCATTTCTATACTAGCCCTCTCCTAGGACCTTTT  250

seq1  GTCTTTCCTTCTATCAAGGCTAATCTGGCTTGTCAACTTGACTGCCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCTTCTATCAAGGCTAATCTGGCTTGTCAACTTGACTGCCATTC  300

seq1  TGTGGGGTTTTGTTTAATAATAGCAAATACTGTATCACTGTCACCCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTTTTGTTTAATAATAGCAAATACTGTATCACTGTCACCCAATC  350

seq1  CCTTTAGCGCAATCTTTCACTGCATCTCATCGAGCTACTGCACTAGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCGCAATCTTTCACTGCATCTCATCGAGCTACTGCACTAGCATC  400

seq1  CTAACTACTCTTTCCAGATTCCTTAGTGCTTTGTACCAGCCAGTCTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACTCTTTCCAGATTCCTTAGTGCTTTGTACCAGCCAGTCTCTAT  450

seq1  AGTATAGGCTGAGAACGTTGGGAAGCCTGTTTTATCCCTTCCACAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGCTGAGAACGTTGGGAAGCCTGTTTTATCCCTTCCACAGTCTT  500

seq1  ATGTTTAAGATGCTTAGTAAGATGAAAGACCACCCATGTAGTCTATGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAGATGCTTAGTAAGATGAAAGACCACCCATGTAGTCTATGGAA  550

seq1  TTTGATCAGATTTTAATCTCACTTCCTCCCTCCGACACATTCTCTAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCAGATTTTAATCTCACTTCCTCCCTCCGACACATTCTCTAGACA  600

seq1  AACACATTTCCTGTAACTACTGAGCTGAGCTGTGTATAGGCTCTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTCCTGTAACTACTGAGCTGAGCTGTGTATAGGCTCTTTTCAT  650

seq1  GACTTAAAGATCTGTTATCTCTAGTCTAAAGCTCTGATTAATCATAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAGATCTGTTATCTCTAGTCTAAAGCTCTGATTAATCATAATTA  700

seq1  TTGTGCGTATCTCTGCCCAAGCACAGTTCCTCAGGAAGGTCTACCTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCGTATCTCTGCCCAAGCACAGTTCCTCAGGAAGGTCTACCTATAG  750

seq1  CAGTTACTTTTGCTCTTTAACACTTTCCTTCCCCTATATTTATCAGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTTTTGCTCTTTAACACTTTCCTTCCCCTATATTTATCAGTGAT  800

seq1  GTGCACACACACACATTCCTTTCTCCCTAGTCTGTAATAAGTAATCTCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACACACATTCCTTTCTCCCTAGTCTGTAATAAGTAATCTCAC  850

seq1  AACATTGC-TTACCAGTTTTACTAGCGGCATAGCCTAATATGGTTCCTAG  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCTTTACCAGTTTTACTAGCGGCATAGCCTAATATGGTTCCTAG  900

seq1  AAAAAAATTCCTTATAAAATTAGTAAAAATGTTTATCTCTGTCTTCCCAG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAATTCCTTATAAAATTAGTAAAAATGTTTATCTCTGTCTTCCCAG  949

seq1  TTTTTATCATAATGTATAACACATGC-TAAGTAGCGTTAAAATCCTATAG  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTTATCATAATGTATAACACATGCTTAAGTAGCGTTAAAATCCTATAG  999

seq1  TAACCAA-GGAAGTGATGTGCAACTGTGAAAGAAATGCAGTGATGTTCCT  1047
      ||||||| | ||||||||||| ||||||||||||||||||||||||||||
seq2  TAACCAATGAAAGTGATGTGC-ACTGTGAAAGAAATGCAGTGATGTTCCT  1048

seq1  GACAAGGACAAGAGACTTTTGTGAGGACTGTAGTGGTCT--GAAAGGTTA  1095
      ||| |||||||||||| ||||||| ||||||||||||||  |||||    
seq2  GAC-AGGACAAGAGAC-TTTGTGA-GACTGTAGTGGTCTTGGAAAG---T  1092

seq1  AAAAGAAATGCATGGATTCTAACTGCCGAAAGCTTTCAAATTAAAGCTAA  1145
      |||||||||||||||||||| |||||   |||||| ||| | || |||||
seq2  AAAAGAAATGCATGGATTCT-ACTGC--GAAGCTTCCAATTAAAGGCTAA  1139


seq1: chr5_5704945_5705851
seq2: B6Ng01-312O08.g_317_1220 (reverse)

seq1  AGTTTGTCTTAAGAAAAGCCCTGTAAACAGGCATAGTTTCTTGCTTTACA  50
      |||||||||| |||||    ||||||  ||||||    || ||| |  ||
seq2  AGTTTGTCTT-AGAAA---GCTGTAACAAGGCATTAGGTC-TGCCTAGCA  45

seq1  ACACGGTGTTCCATTTATTATAAAAAATCATAATCTATATGATG-AAGGG  99
      ||||||||||||||| ||||||||||||||| |||||||||||| |||||
seq2  ACACGGTGTTCCATTAATTATAAAAAATCATTATCTATATGATGAAAGGG  95

seq1  GTCCATTCATTCTATTTTGTCTACACTCAG-AAACCAGCTGCAGACTGCA  148
      || || |||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTCAATCATTCTATTTTGTCTACACTCAGAAAACCAGCTGCAGACTGCA  145

seq1  AAAGTCCAGGAACAAGGCAATAAAATCCCCCACCCGAGGAACAGCCTGAA  198
      ||||||||||||||||||||||||||||||||||||||||  |||||| |
seq2  AAAGTCCAGGAACAAGGCAATAAAATCCCCCACCCGAGGACAAGCCTG-A  194

seq1  GACAGCCACATGAATGGGAGCTATCTGATCTCAGGACAGG-CCATCTGTG  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACAGCCACATGAATGGGAGCTATCTGATCTCAGGACAGGCCCATCTGTG  244

seq1  CTGGGCAGCCCATCTGGGGGTTAATCATTCGTGATGCAGGACTGCAGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCCCATCTGGGGGTTAATCATTCGTGATGCAGGACTGCAGCCC  294

seq1  ATCTGGAACATCCCTGCACCTACCAATGAAGTTATAGATTGCCTAACCC-  346
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGGAACATCCCTGCACCTACCAATGAAGTTATAGATTGCCTAACCCT  344

seq1  TAACATAGTAACCAATTAAAATTGTACTACTGTCAGGGCTTTGGCCCCCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGTAACCAATTAAAATTGTACTACTGTCAGGGCTTTGGCCCCCT  394

seq1  ACCAGTCACATTAGAGATTACCTAATCCTTCTAGAGAGTCCCCCTCCAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCACATTAGAGATTACCTAATCCTTCTAGAGAGTCCCCCTCCAGT  444

seq1  TCCCTATAAGAAGGCCTGCATGCTTTTGTCTGGGGCTATCACCATTTTTG  496
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCCTATAAGAAGG-CTGCATGCTTTTGTCTGGGGCTATCACCATTTTTG  493

seq1  ATGTGGTGGTGACCCCAGCATGGTGGTTGGTTCTGCAGAATAAATTCCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGGTGACCCCAGCATGGTGGTTGGTTCTGCAGAATAAATTCCCT  543

seq1  TTGTTCTTGCATACTGTTTGAGTCTGGGGTCTTCCTTCAGTGATTCCTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTGCATACTGTTTGAGTCTGGGGTCTTCCTTCAGTGATTCCTGA  593

seq1  ACTCTAACAATAATAAATCATTATCTATTTAGCACTTGAGAGAGAAAAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACAATAATAAATCATTATCTATTTAGCACTTGAGAGAGAAAAAC  643

seq1  AATCCGTTCAGACCATATCTTTCATAAAAGTCCACCTGCCTCTGCCTCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGTTCAGACCATATCTTTCATAAAAGTCCACCTGCCTCTGCCTCCA  693

seq1  AAGTGCCGTGATGAAAGCCCATGACATCACAGGAAAAAAAAAATAAGAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCGTGATGAAAGCCCATGACATCACAGGAAAAAAAAAATAAGAGA  743

seq1  GGTGCGTCACTATGAAGTGTGTTTTAGCATGTGTATTAAGTCCAGTAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTCACTATGAAGTGTGTTTTAGCATGTGTATTAAGTCCAGTAAAC  793

seq1  AGGCATAGTTTCTATAGGGAGGTGACTTGGACCATACTCAGTGCAAGCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGTTTCTATAGGGAGGTGACTTGGACCATACTCAGTGCAAGCAC  843

seq1  TTTAATAGTTCTATATATTGTCTGATCAGGGTGGCTCTGAAACAAGGTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTTCTATATATTGTCTGATCAGGGTGGCTCTGAAACAAGGTAG  893

seq1  TGGAAGAAATG  907
      |||||||||||
seq2  TGGAAGAAATG  904


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