BAC Information

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BAC

Clone NameB6Ng01-312P13
Chromosome5 (Build37)
Map Location 48,624,931 - 48,773,523
singlet/doubletdoublet
Overlap geneSlit2, 4933428G09Rik
Upstream geneLOC100040865, LOC100040876
Downstream geneKcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312P13.bB6Ng01-312P13.g
ACCGA104307GA104308
length1,1481,144
definitionB6Ng01-312P13.b B6Ng01-312P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,624,931 - 48,626,098)(48,772,379 - 48,773,523)
sequence
gaattcctcagcaataataggatagttagcaatacatgtgcatagttcaa
caagttatgaaatgtcctgagacatcagacatcaggcaaagctggctcta
ttcatgtgctggaatttttttcaaaagagaagtttttttcaattccctca
agggtctcagaactccagtaagataaagcccacttatctccgttattcgt
gacaaaggaaattgctgataaggacatgtgcatttgtttctgactatcca
gtgatgcctggataggagggcaccatctttcttcttatctatggctaaga
agaaatagaatatttttattttttgtttattactgaacatattgttttaa
agcaacaacattttcatcatctgtcttagagtttgtttgctgtgatatca
ttccatgaccaagaaaaaaaatggaagggaaaggatttacttactcatat
actttgaggtcatggttccttatcgaaggaactgtgtatgtgtttgcatg
aactcaaggcaggtgtctggaagcaggaatggatgcagaggtcctaaatg
agtgctgattgcttggcttgcttttcatgaattgttcagtctaccaatca
aatccatgggtggtacatgcccacagatttcagccttcccataccaatgg
ccaatcaaaaagaatgtaaaataggattgtgcacagaccaatattctagg
gttatattctcaactgaggtcttctttttcctaacgactatagcttgtgt
caagttgacataaaactagccagcataatgtttctctttttatatttgcc
tccttcttctggtggagtgattaccctgagtgtggaaagatcaataaatt
aatttttcatgagttctgaataataggtaatgcaactacagatttgtaaa
tgagggtttcttccttcttgaaaaccacccgataaacagctcagagagga
aggaactgggaactaaagccagtgctttagcagcagcagggaatgacaca
ctgtaatcctgtatgacatgtcaaagtagagttattcaggcacctattac
ttgtgtatattgcatttattctttggggagtctggactgaactatggaca
gattttccataattaaaacaatccggatgcagcttgatgaatgctcag

gaattcattcttctagctgggctgccttgtctggcctcagtggaagagga
tgtgcctagctctgcaaacacttgatgtgccagggtaaggagaaactcag
aggaggcttccaccctgggtttggggaaagggactgtgaaaggaggagca
gtgatcaagacgtaaagtgaataaaagaaaagggaggggagcggtgagca
gggcataataagtgaataagtaaaatagttaaaatcaaattaaaaacaca
aaaaaacctacaccatcacagcaaaacagaaattcttagcctaaaagagg
aaaaccagggaaaggtcacgtttgtccttgcagctgcaatgagctaccac
atgctaccacctctcctaggactgaaagtcgaccgtacagaaacaatgca
agtagagttctactcacatttccgccgtgctgctccagcttttgcagagc
actggtgatgggctctttgaattttttgtccattagcctcttcgaaagct
tttggaaattaggagaaagtgggggttaataaataatctctgtataagca
taaataaattttgaacatgccttaatttaaggaagtctaatttacttaaa
aaaaaaaaaaactaagacaaaatttgtttcagtaaatgcttcactaaaat
ttacatttaacaatataacatttggttaaaagttgaatttatgtcacttc
aagctctacctatgtcacaatatctgctacgacaagttatctggggctgg
ggaaatgactgactttaatacctaatatccacattaagagctgggtgtgg
tggcttctgtttatacttctatcactgggggtgccagaaacaggttggga
cccactgggccagacagtgtagcctaactggtaagctccaggtaaacaga
agatctgtcttaaaggaagtggacagtacttctgaagatacactcgacat
tgtcctctacatccacatgcatgcatgtatagacatacaggcacacgctt
gcatccacatacaacacatgtactcatacaaaaacctacatttacaaaac
atgccattagtttcaattcatcaatggcaagttccacgcagagaacagga
attggtagcagccttggcttcaagccaactttacccagcaacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48624931_48626098
seq2: B6Ng01-312P13.b_48_1195

seq1  GAATTCCTCAGCAATAATAGGATAGTTAGCAATACATGTGCATAGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCAATAATAGGATAGTTAGCAATACATGTGCATAGTTCAA  50

seq1  CAAGTTATGAAATGTCCTGAGACATCAGACATCAGGCAAAGCTGGCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATGAAATGTCCTGAGACATCAGACATCAGGCAAAGCTGGCTCTA  100

seq1  TTCATGTGCTGGAATTTTTTTCAAAAGAGAAGTTTTTTTCAATTCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGCTGGAATTTTTTTCAAAAGAGAAGTTTTTTTCAATTCCCTCA  150

seq1  AGGGTCTCAGAACTCCAGTAAGATAAAGCCCACTTATCTCCGTTATTCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCAGAACTCCAGTAAGATAAAGCCCACTTATCTCCGTTATTCGT  200

seq1  GACAAAGGAAATTGCTGATAAGGACATGTGCATTTGTTTCTGACTATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGAAATTGCTGATAAGGACATGTGCATTTGTTTCTGACTATCCA  250

seq1  GTGATGCCTGGATAGGAGGGCACCATCTTTCTTCTTATCTATGGCTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCCTGGATAGGAGGGCACCATCTTTCTTCTTATCTATGGCTAAGA  300

seq1  AGAAATAGAATATTTTTATTTTTTGTTTATTACTGAACATATTGTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAATATTTTTATTTTTTGTTTATTACTGAACATATTGTTTTAA  350

seq1  AGCAACAACATTTTCATCATCTGTCTTAGAGTTTGTTTGCTGTGATATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACATTTTCATCATCTGTCTTAGAGTTTGTTTGCTGTGATATCA  400

seq1  TTCCATGACCAAGAAAAAAAATGGAAGGGAAAGGATTTACTTACTCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGACCAAGAAAAAAAATGGAAGGGAAAGGATTTACTTACTCATAT  450

seq1  ACTTTGAGGTCATGGTTCCTTATCGAAGGAACTGTGTATGTGTTTGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGTCATGGTTCCTTATCGAAGGAACTGTGTATGTGTTTGCATG  500

seq1  AACTCAAGGCAGGTGTCTGGAAGCAGGAATGGATGCAGAGGTCCTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGGCAGGTGTCTGGAAGCAGGAATGGATGCAGAGGTCCTAAATG  550

seq1  AGTGCTGATTGCTTGGCTTGCTTTTCATGAATTGTTCAGTCTACCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATTGCTTGGCTTGCTTTTCATGAATTGTTCAGTCTACCAATCA  600

seq1  AATCCATGGGTGGTACATGCCCACAGATTTCAGCCTTCCCATACCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGGGTGGTACATGCCCACAGATTTCAGCCTTCCCATACCAATGG  650

seq1  CCAATCAAAAAGAATGTAAAATAGGATTGTGCACAGACCAATATTCTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAAAAGAATGTAAAATAGGATTGTGCACAGACCAATATTCTAGG  700

seq1  GTTATATTCTCAACTGAGGTCTTCTTTTTCCTAACGACTATAGCTTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTCTCAACTGAGGTCTTCTTTTTCCTAACGACTATAGCTTGTGT  750

seq1  CAAGTTGACATAAAACTAGCCAGCATAATGTTTCTCTTTTTATATTTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGACATAAAACTAGCCAGCATAATGTTTCTCTTTTTATATTTGCC  800

seq1  TCCTTCTTCTGGTGGAGTGATTACCCTGAGTGTGGAAAGATCAATAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTCTGGTGGAGTGATTACCCTGAGTGTGGAAAGATCAATAAATT  850

seq1  AATTTTTCATGAGTTCTGAATAATAGGTAATGCAACTACAGATTTGTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCATGAGTTCTGAATAATAGGTAATGCAACTACAGATTTGTAAA  900

seq1  TGAGGGTTTCTTCCTTCTTGAAAACCACCCGATAAACAGCTCAGAGAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTTTCTTCCTTCTTGAAAACCACCCGATAAACAGCTCAGAGAGGA  950

seq1  AGGAACTGGGAACT-AAGCCAGTGCTTTAGCAGCAGCAAGGAAATGACAA  999
      |||||||||||||| |||||||||||||||||||||| ||| |||||| |
seq2  AGGAACTGGGAACTAAAGCCAGTGCTTTAGCAGCAGC-AGGGAATGAC-A  998

seq1  CACTGTTAATCCTGTTAATGACAATGTCAAAAGTAGAGTTTATTCAAGGC  1049
      ||||| |||||||||  ||||| ||||| ||||||||| |||||| ||||
seq2  CACTG-TAATCCTGT--ATGAC-ATGTC-AAAGTAGAG-TTATTC-AGGC  1041

seq1  CAACCTATTTAACCTTTGTTGTATATTGCATTTATTCCTTTGGGGAGTTC  1099
        |||||||  ||  ||| ||||||||||||||||| |||||||||| ||
seq2  --ACCTATT--AC--TTG-TGTATATTGCATTTATT-CTTTGGGGAG-TC  1082

seq1  TGAACTTGAAACTATGGACAGATTTTTTCATAAATAAAACAAT-CGGATG  1148
      || |||   ||||||||||||| |||| ||||| ||||||||| ||||||
seq2  TGGACT--GAACTATGGACAGA-TTTTCCATAATTAAAACAATCCGGATG  1129

seq1  CAGGCTTGGTGGATGCTCAG  1168
      || ||||| || ||||||||
seq2  CA-GCTTGATGAATGCTCAG  1148


seq1: chr5_48772379_48773523
seq2: B6Ng01-312P13.g_68_1211 (reverse)

seq1  TCGTTGCTGGGTAATGTGTGCTTTGGAGGCAGAGCTCGCTACC-ATTTCT  49
      |||||||||||||| || ||  ||| || ||  ||| |||||| ||| ||
seq2  TCGTTGCTGGGTAAAGT-TGGCTTGAAGCCAAGGCT-GCTACCAATTCCT  48

seq1  GTTCTCTGCGTGG-ACTTGCATATGATGAAATGAAAATTATGCCATGTTT  98
      ||||||||||||| ||||||   ||||||| ||||| | ||| |||| ||
seq2  GTTCTCTGCGTGGAACTTGCCATTGATGAATTGAAACTAATGGCATG-TT  97

seq1  TTGTAAATGTA-GTTTTTGTATGAGTACATGTGTTTGTATGTGGATGCAA  147
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTGTAAATGTAGGTTTTTGTATGAGTACATGTG-TTGTATGTGGATGCAA  146

seq1  GCGTGTGCCTGTATGTCTATACATGCATGCATGTGGATGGTAGAGGACAA  197
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGTGTGCCTGTATGTCTATACATGCATGCATGTGGAT-GTAGAGGACAA  195

seq1  TGTCGAGTGTTATCTTCAGAAGTACTGTCCACTTCCTTTAAGACAGATCT  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAGTG-TATCTTCAGAAGTACTGTCCACTTCCTTTAAGACAGATCT  244

seq1  TCTGTTTACCTGGAGCTTACCAGTTAGGCTACACTGTCTGG-CCAGTGGG  296
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGTTTACCTGGAGCTTACCAGTTAGGCTACACTGTCTGGCCCAGTGGG  294

seq1  TCCCAACCTGTTTCTGGCA-CCCCAGTGATAGAAGTATAAACAGAAGCCA  345
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCAACCTGTTTCTGGCACCCCCAGTGATAGAAGTATAAACAGAAGCCA  344

seq1  CCACACCCAGCTCTTAATGTGGATATTAGGTATTAAAGTCAGTCATTTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCAGCTCTTAATGTGGATATTAGGTATTAAAGTCAGTCATTTCC  394

seq1  CCAGCCCCAGATAACTTGTCGTAGCAGATATTGTGACATAGGTAGAGCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCCAGATAACTTGTCGTAGCAGATATTGTGACATAGGTAGAGCTT  444

seq1  GAAGTGACATAAATTCAACTTTTAACCAAATGTTATATTGTTAAATGTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACATAAATTCAACTTTTAACCAAATGTTATATTGTTAAATGTAA  494

seq1  ATTTTAGTGAAGCATTTACTGAAACAAATTTTGTCTTAGTTTTTTTTTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTGAAGCATTTACTGAAACAAATTTTGTCTTAGTTTTTTTTTTT  544

seq1  TTTAAGTAAATTAGACTTCCTTAAATTAAGGCATGTTCAAAATTTATTTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAAATTAGACTTCCTTAAATTAAGGCATGTTCAAAATTTATTTA  594

seq1  TGCTTATACAGAGATTATTTATTAACCCCCACTTTCTCCTAATTTCCAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATACAGAGATTATTTATTAACCCCCACTTTCTCCTAATTTCCAAA  644

seq1  AGCTTTCGAAGAGGCTAATGGACAAAAAATTCAAAGAGCCCATCACCAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCGAAGAGGCTAATGGACAAAAAATTCAAAGAGCCCATCACCAGT  694

seq1  GCTCTGCAAAAGCTGGAGCAGCACGGCGGAAATGTGAGTAGAACTCTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAAAAGCTGGAGCAGCACGGCGGAAATGTGAGTAGAACTCTACT  744

seq1  TGCATTGTTTCTGTACGGTCGACTTTCAGTCCTAGGAGAGGTGGTAGCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTTTCTGTACGGTCGACTTTCAGTCCTAGGAGAGGTGGTAGCAT  794

seq1  GTGGTAGCTCATTGCAGCTGCAAGGACAAACGTGACCTTTCCCTGGTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCTCATTGCAGCTGCAAGGACAAACGTGACCTTTCCCTGGTTTT  844

seq1  CCTCTTTTAGGCTAAGAATTTCTGTTTTGCTGTGATGGTGTAGGTTTTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTAGGCTAAGAATTTCTGTTTTGCTGTGATGGTGTAGGTTTTTT  894

seq1  TGTGTTTTTAATTTGATTTTAACTATTTTACTTATTCACTTATTATGCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTAATTTGATTTTAACTATTTTACTTATTCACTTATTATGCCC  944

seq1  TGCTCACCGCTCCCCTCCCTTTTCTTTTATTCACTTTACGTCTTGATCAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCGCTCCCCTCCCTTTTCTTTTATTCACTTTACGTCTTGATCAC  994

seq1  TGCTCCTCCTTTCACAGTCCCTTTCCCCAAACCCAGGGTGGAAGCCTCCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTCCTTTCACAGTCCCTTTCCCCAAACCCAGGGTGGAAGCCTCCT  1044

seq1  CTGAGTTTCTCCTTACCCTGGCACATCAAGTGTTTGCAGAGCTAGGCACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTCTCCTTACCCTGGCACATCAAGTGTTTGCAGAGCTAGGCACA  1094

seq1  TCCTCTTCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAAGAATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCACTGAGGCCAGACAAGGCAGCCCAGCTAGAAGAATGAATTC  1144


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