BAC Information

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BAC

Clone NameB6Ng01-313A18
Chromosome5 (Build37)
Map Location 32,550,968 - 32,747,508
singlet/doubletdoublet
Overlap genePlb1, EG665350, LOC545743
Upstream geneNrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217
Downstream genePpp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313A18.bB6Ng01-313A18.g
ACCGA104363GA104364
length1,1001,059
definitionB6Ng01-313A18.b B6Ng01-313A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,746,407 - 32,747,508)(32,550,968 - 32,552,011)
sequence
gaattctgtcctcagaacccacagaaaggacctaagcacgatggcctgtg
ctgctattgtaatcccactgggacagaagtatccccgggccttgatggct
ggttagccttagttatctgatgagttccaggccagtgagaaacttgtttc
caaaaacaaggcaggacaggtacagtggtgcatgcctatataaagtccca
gcacttaggaagcagaagcaggcagctctccatgagttcaaggctagtcc
agcctacatagcaagatctagaccagggaaagctatatagtgagatccca
taaaacaaaaacaaaaacagaaacaaaacaaaacaacaacaacaaaaacc
aaataccaacaaggttattggaatctgaagaacaacacttgaggttgact
tttgatttccacaggtatacacacacacacacacacacacacagacacac
acacacagacatacacatacacacacagaactttcagctcagaaataggc
tgcatcttatcttctaacacagggcaaaaatatgtcagactttgaggtca
aagttgagagaattttaagtcaaactctgtggctgctactagaagcatgg
ttgaaaatggcttagggttcatatgccctcttttcagccttaaggatcat
agcgctgacatattaataaaaagcagtttgggagatggtactaagagtct
gccaggagtgtgacctcttgatgctgtaactaatgaacttggctgtgttt
gattttgagaagctcaaatctgagagaacagaattgtggtcgctgagtaa
ggacatgaaaaatgacagcaaaggaggtaatagcaacagccgtgagcatg
tgctatcctgatagcttatatatatatatcagttatcccggaataatcct
caaagatagaacccattgtgttttcttttttacagacaaactgaggttta
aagaaagtttagcaactgctttcaaggctgtacagcttggcaatttatca
tggttttctgggccttggccttcctgttccagctgaatagaatgtcattg
ccaactgcacatattccattgtcatggtgattggctcctcctcttcttgg

gaattcactttgtggaaataggtgataggtgattaccacccaaatggaaa
ctctaagctgtcaactcagagtttgctggaaggctccataatttgccttc
tgtaaactcaaagaatgacaagggagagtttagtgggaaagtttagtggt
ggagaaacagaggcttcaggtctgccacgactgtgggaggttggcgggag
gaggctagaggcacgctaagaaatagggcatcttccgcaatttacttgag
cctgtttggttttcaacctgtgtgttatgatcctttggcaaacctctatc
tccaaaaatatttacattacgattcatcacagtagcaaactgcagttatg
aagtagcaatgaaagcaatgttatggttggggtcacaataacatgaggaa
ctgtaacgtactaaaggatcacgggaaggttgagaaccactgctctagct
gatcctgagctggaagcacttacagagcaatagggacagaggatgcggtt
tggtggctgtggatggtggtcagactcccagtgtctttgtatattctgtc
gcgatgcctgaggtcttttctatacagttggtactccgtgtgtcttgttt
gagagtgcctcccttgaggtcacagagaacttttcacctttctttcctta
tttgctttccgtttaggtcaatcttggtacatctgggatcaattgttggt
tgtgtctagtgtaagagcggagccccgagttgtgtttgttattgtttcct
tcctgcagatccccagctatctcagcaccactgactgaaaagttagtttg
tttcccactgccgctgctgtgggccactttgttttcccaggttaggggtc
acagggttccatgtccttggggcagcttctttgtttctcttacctagcac
acattgccattcactttggtagcctcaacagctacatatataactttcca
ttttcttccccttcttttgaagtgtttgggctctgaattctcttaaaaat
taatcagcttcatccaattttttaccccaaaaactttgttggaattttga
ttaaagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_32746407_32747508
seq2: B6Ng01-313A18.b_47_1146 (reverse)

seq1  CCAAGTCCAAGAGAGAGGAGCCAATCA-CATGACATGGGAATATGGTTCC  49
      |||||   ||||| ||||||||||||| |||||||  ||||||||  | |
seq2  CCAAG---AAGAG-GAGGAGCCAATCACCATGACAATGGAATATG--TGC  44

seq1  AGTTGGGCAAATGACATTCTATTCAGCTGGACAGGGAAGGCCAAGG-CCA  98
      ||||||   ||||||||||||||||||||||   |||||||||||| |||
seq2  AGTTGG--CAATGACATTCTATTCAGCTGGAACAGGAAGGCCAAGGCCCA  92

seq1  GAAAACCATGATAAATTGCCAAGCTGTACAGCCTTG-AAGCAGTTGCTAA  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAAACCATGATAAATTGCCAAGCTGTACAGCCTTGAAAGCAGTTGCTAA  142

seq1  AC-TTCTTTAAACCTCAGTTTGTCTGTAAAAA--GAAACACAATGGGTTC  194
      || |||||||||||||||||||||||||||||   |||||||||||||||
seq2  ACTTTCTTTAAACCTCAGTTTGTCTGTAAAAAAGAAAACACAATGGGTTC  192

seq1  TATCTTTGAGGATTATTCCGGGATAACTGATATATATATATAAGCTATCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGAGGATTATTCCGGGATAACTGATATATATATATAAGCTATCA  242

seq1  GGATAGCACATGCTCACGGCTGTTGCTATTACCTCCTTTGCTGTCATTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCACATGCTCACGGCTGTTGCTATTACCTCCTTTGCTGTCATTTT  292

seq1  TCATGTCCTTACTCAGCGACCACAATTCTGTTCTCTCAGATTTGAGCTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCCTTACTCAGCGACCACAATTCTGTTCTCTCAGATTTGAGCTTC  342

seq1  TCAAAATCAAACACAGCCAAGTTCATTAGTTACAGCATCAAGAGGTCACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATCAAACACAGCCAAGTTCATTAGTTACAGCATCAAGAGGTCACA  392

seq1  CTCCTGGCAGACTCTTAGTACCATCTCCCAAACTGCTTTTTATTAATATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCAGACTCTTAGTACCATCTCCCAAACTGCTTTTTATTAATATG  442

seq1  TCAGCGCTATGATCCTTAAGGCTGAAAAGAGGGCATATGAACCCTAAGCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCTATGATCCTTAAGGCTGAAAAGAGGGCATATGAACCCTAAGCC  492

seq1  ATTTTCAACCATGCTTCTAGTAGCAGCCACAGAGTTTGACTTAAAATTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACCATGCTTCTAGTAGCAGCCACAGAGTTTGACTTAAAATTCT  542

seq1  CTCAACTTTGACCTCAAAGTCTGACATATTTTTGCCCTGTGTTAGAAGAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTTGACCTCAAAGTCTGACATATTTTTGCCCTGTGTTAGAAGAT  592

seq1  AAGATGCAGCCTATTTCTGAGCTGAAAGTTCTGTGTGTGTATGTGTATGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAGCCTATTTCTGAGCTGAAAGTTCTGTGTGTGTATGTGTATGT  642

seq1  CTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATACCTGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGTATACCTGTGG  692

seq1  AAATCAAAAGTCAACCTCAAGTGTTGTTCTTCAGATTCCAATAACCTTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAGTCAACCTCAAGTGTTGTTCTTCAGATTCCAATAACCTTGT  742

seq1  TGGTATTTGGTTTTTGTTGTTGTTGTTTTGTTTTGTTTCTGTTTTTGTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTGGTTTTTGTTGTTGTTGTTTTGTTTTGTTTCTGTTTTTGTTT  792

seq1  TTGTTTTATGGGATCTCACTATATAGCTTTCCCTGGTCTAGATCTTGCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATGGGATCTCACTATATAGCTTTCCCTGGTCTAGATCTTGCTA  842

seq1  TGTAGGCTGGACTAGCCTTGAACTCATGGAGAGCTGCCTGCTTCTGCTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTGGACTAGCCTTGAACTCATGGAGAGCTGCCTGCTTCTGCTTC  892

seq1  CTAAGTGCTGGGACTTTATATAGGCATGCACCACTGTACCTGTCCTGCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCTGGGACTTTATATAGGCATGCACCACTGTACCTGTCCTGCCT  942

seq1  TGTTTTTGGAAACAAGTTTCTCACTGGCCTGGAACTCATCAGATAACTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGGAAACAAGTTTCTCACTGGCCTGGAACTCATCAGATAACTAA  992

seq1  GGCTAACCAGCCATCAAGGCCCGGGGATACTTCTGTCCCAGTGGGATTAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCAGCCATCAAGGCCCGGGGATACTTCTGTCCCAGTGGGATTAC  1042

seq1  AATAGCAGCACAGGCCATCGTGCTTAGGTCCTTTCTGTGGGTTCTGAGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGCACAGGCCATCGTGCTTAGGTCCTTTCTGTGGGTTCTGAGGA  1092

seq1  CAGAATTC  1102
      ||||||||
seq2  CAGAATTC  1100

seq1: chr5_32550968_32552011
seq2: B6Ng01-313A18.g_69_1127

seq1  GAATTCACTTTGTGGAAATAGGTGATAGGTGATTACCACCCAAATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTGGAAATAGGTGATAGGTGATTACCACCCAAATGGAAA  50

seq1  CTCTAAGCTGTCAACTCAGAGTTTGCTGGAAGGCTCCATAATTTGCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGCTGTCAACTCAGAGTTTGCTGGAAGGCTCCATAATTTGCCTTC  100

seq1  TGTAAACTCAAAGAATGACAAGGGAGAGTTTAGTGGGAAAGTTTAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCAAAGAATGACAAGGGAGAGTTTAGTGGGAAAGTTTAGTGGT  150

seq1  GGAGAAACAGAGGCTTCAGGTCTGCCACGACTGTGGGAGGTTGGCGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAGAGGCTTCAGGTCTGCCACGACTGTGGGAGGTTGGCGGGAG  200

seq1  GAGGCTAGAGGCACGCTAAGAAATAGGGCATCTTCCGCAATTTACTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGAGGCACGCTAAGAAATAGGGCATCTTCCGCAATTTACTTGAG  250

seq1  CCTGTTTGGTTTTCAACCTGTGTGTTATGATCCTTTGGCAAACCTCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTGGTTTTCAACCTGTGTGTTATGATCCTTTGGCAAACCTCTATC  300

seq1  TCCAAAAATATTTACATTACGATTCATCACAGTAGCAAACTGCAGTTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATATTTACATTACGATTCATCACAGTAGCAAACTGCAGTTATG  350

seq1  AAGTAGCAATGAAAGCAATGTTATGGTTGGGGTCACAATAACATGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCAATGAAAGCAATGTTATGGTTGGGGTCACAATAACATGAGGAA  400

seq1  CTGTAACGTACTAAAGGATCACGGGAAGGTTGAGAACCACTGCTCTAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACGTACTAAAGGATCACGGGAAGGTTGAGAACCACTGCTCTAGCT  450

seq1  GATCCTGAGCTGGAAGCACTTACAGAGCAATAGGGACAGAGGATGCGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAGCTGGAAGCACTTACAGAGCAATAGGGACAGAGGATGCGGTT  500

seq1  TGGTGGCTGTGGATGGTGGTCAGACTCCCAGTGTCTTTGTATATTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGTGGATGGTGGTCAGACTCCCAGTGTCTTTGTATATTCTGTC  550

seq1  GCGATGCCTGAGGTCTTTTCTATACAGTTGGTACTCCGTGTGTCTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGCCTGAGGTCTTTTCTATACAGTTGGTACTCCGTGTGTCTTGTTT  600

seq1  GAGAGTGCCTCCCTTGAGGTCACAGAGAACTTTTCACCTTTCTTTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCCTCCCTTGAGGTCACAGAGAACTTTTCACCTTTCTTTCCTTA  650

seq1  TTTGCTTTCCGTTTAGGTCAATCTTGGTACATCTGGGATCAATTGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTCCGTTTAGGTCAATCTTGGTACATCTGGGATCAATTGTTGGT  700

seq1  TGTGTCTAGTGTAAGAGCGGAGCCCCGAGTTGTGTTTGTTATTGTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTAGTGTAAGAGCGGAGCCCCGAGTTGTGTTTGTTATTGTTTCCT  750

seq1  TCCTGCAGATCCCCAGCTATCTCAGCACCACTGACTGAAAAGTTAG-TTG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTGCAGATCCCCAGCTATCTCAGCACCACTGACTGAAAAGTTAGTTTG  800

seq1  TTTCCCACTGCCGCTGCTGTGGGCCACTT--GTTTCCCAGGTTAGGGGTC  847
      |||||||||||||||||||||||||||||   ||||||||||||||||||
seq2  TTTCCCACTGCCGCTGCTGTGGGCCACTTTGTTTTCCCAGGTTAGGGGTC  850

seq1  ACAGGGTTCCATGTCC-TGGGCAAGCTTCTTTGTTTCTC-TACCTAGCAC  895
      |||||||||||||||| ||||  |||||||||||||||| ||||||||||
seq2  ACAGGGTTCCATGTCCTTGGGGCAGCTTCTTTGTTTCTCTTACCTAGCAC  900

seq1  ACATTGCCA-TCAC-TTGGTAGCCTC-ACAGCTACATATATAACTTTCCA  942
      ||||||||| |||| ||||||||||| |||||||||||||||||||||||
seq2  ACATTGCCATTCACTTTGGTAGCCTCAACAGCTACATATATAACTTTCCA  950

seq1  T----TTCTCCCTCTTTTGAAGTGTTTTGGCTTTGAATTCTCTTAAAAAT  988
      |    ||| || ||||||||||||||| |||| |||||||||||||||||
seq2  TTTTCTTCCCCTTCTTTTGAAGTGTTTGGGCTCTGAATTCTCTTAAAAAT  1000

seq1  TTATCAGC-TCATCC-ATTTTTTACCCCAGAAAACTTGTTGGGATTTTGA  1036
      | |||||| |||||| ||||||||||||| |||  ||||||| |||||||
seq2  TAATCAGCTTCATCCAATTTTTTACCCCAAAAACTTTGTTGGAATTTTGA  1050

seq1  -TAAAGATT  1044
       |||||| |
seq2  TTAAAGAAT  1059