BAC Information

Click to search

BAC

Clone NameB6Ng01-313D17
Chromosome5 (Build37)
Map Location 24,461,075 - 24,462,264
singlet/doubletsinglet
Overlap genePrkag2
Upstream geneDrctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1, Asb10, 4931409K22Rik, Abcf2, LOC100042348, Smarcd3, 1700022A21Rik, Nub1, 2810046M22Rik, Crygn, Rheb
Downstream geneGalntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835, Actr3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313D17.bB6Ng01-313D17.g
ACCGA104504GA104505
length1,1921,100
definitionB6Ng01-313D17.b B6Ng01-313D17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctccttcccttcactaatcacaccccaacactatgaagtacaa
ggaccacagcttggatctgggtcccttttgacatggacagtctgtgcata
attgctattcattgctccatcatgccccttggaggtgttcacggtgaaaa
cgcaagcccaacagcagatgacaggcaatagaactctcagctactccaga
tgggaatttaagaccctgaaccctgactgatgggcaggcttgaggggggc
actgtcagagtagcaatccctgcatagtgaagacccatgacatctgagaa
gcccaggcaagcagcaagagagctcatagattatgtgtaatggtctttgc
tctttagatccatcttagtgggtaccacctgtgactttctcagtgacgtt
acaggatcctggagacatcaggacactcgaacacagtgattcaaggctgt
tgtgatgtctgtgtcctgctccagcccctttcaaaggttcctcaagggct
caagatatgtctattcattggcagagtgtctgcctagcatacatgaaatc
cagcactgttaaaagttagcttagccagtaaagtgcctactgtgtgtgtt
aggacctgagtgtgatcccagatcccacattaaaaactggacctgcaagt
gcatgcttataaacctatcgctgcaagtagagacagttggatccctggaa
catgctaatttagccagtctggcaactcccaggacagatgagacactgca
agcaaaggactttgttccatactctgctgcattttaataatgtactggaa
taactgtttatgtttatttatttatatccttcatccctgtcttagctatg
tttctactgttgtgataaaaacactgaccagaagccgcttggggaggaaa
gggcttatttggcttctatatccccagggccagggcaggaacacaggcag
gaacctagaggcaggaaccacagctcacacttggtcacagaggaatgcta
catactgatatgcattcttatggctgcttagtgtgatggtttgtataatt
cttggaacagggagtggcaccaattggaggtggtaaccttggtcgaatag
gtgtgaacctgattgggagtaggtggtcactttgggtgtggggcctagat
cctacctagaatgccttcagtctagtctcacattagcagcct
gaattcagcagaaagatgaatcctgttttctttttttcttttctttttgc
atccattctgttagtatatgtctttttattggggaatttagactattaat
gttgaaaataaaagtgagcagtgtttgttaattcttgttattttgttgtt
gttgagctgcttctgctggtaatgctggtagtaattgtgtgtgtgttctt
tttattgggcagctatagccaagaacagctattttatattatattatttt
atattttttattattttcacatgcattaaagcaaagcaaaacaaagtaaa
acaaaacaaaacaaaacaaaacaaaacaaaacaaaatcccctcagtttca
tgtagttcaggatagcctcaattcactacatagccaaagatgatcttaga
ctattgtggtggtcctgatgctaaggtcctgttccccaattggctcttga
tctcttagtaaagatgccacgggccaattgcaggcagaaggaataggtgg
gacttctgggtccccacagacaagttggcagatgcaggagagagaggaaa
gttttttctccatgcttcagagggaaaataaccaaccagccatgtgagat
ctcaggctgagcagccacaggctgcttctacaggtaggaagttggggtgt
tgagctgggactaaaagcaacagaacaaccaaaattgaatgtagatttaa
ggtactgagccaggagtactgggaagggcaagctaaccaaggtagactaa
ggggtgctagcagttgagtcagtaaggcaagttgaaattgagcaattgtg
tgtgtttgtgttttttcatccacagatccaatattttctgggcagggact
gggtagtatggtccattcccagagtttagattaggaggggtagcaaaagc
tgcatgctaataggcattgtcttagttaggttttagtgctgtgaacagac
accatgaccaaagcaagccttataaaaaacatttaaattggggctggcta
cagttcagagcttcagttcaattatctatcaagatgggagcattggccag
catcaagcaaggcatggtgccagggaagggaccttggagagttcctatgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_24461075_24462264
seq2: B6Ng01-313D17.b_47_1238

seq1  GAATTCTCTCCTTCCCTTCACTAATCACACCCCAACACTATGAAGTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTCCCTTCACTAATCACACCCCAACACTATGAAGTACAA  50

seq1  GGACCACAGCTTGGATCTGGGTCCCTTTTGACATGGACAGTCTGTGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACAGCTTGGATCTGGGTCCCTTTTGACATGGACAGTCTGTGCATA  100

seq1  ATTGCTATTCATTGCTCCATCATGCCCCTTGGAGGTGTTCACGGTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTATTCATTGCTCCATCATGCCCCTTGGAGGTGTTCACGGTGAAAA  150

seq1  CGCAAGCCCAACAGCAGATGACAGGCAATAGAACTCTCAGCTACTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGCCCAACAGCAGATGACAGGCAATAGAACTCTCAGCTACTCCAGA  200

seq1  TGGGAATTTAAGACCCTGAACCCTGACTGATGGGCAGGCTTGAGGGGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTAAGACCCTGAACCCTGACTGATGGGCAGGCTTGAGGGGGGC  250

seq1  ACTGTCAGAGTAGCAATCCCTGCATAGTGAAGACCCATGACATCTGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAGAGTAGCAATCCCTGCATAGTGAAGACCCATGACATCTGAGAA  300

seq1  GCCCAGGCAAGCAGCAAGAGAGCTCATAGATTATGTGTAATGGTCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCAAGCAGCAAGAGAGCTCATAGATTATGTGTAATGGTCTTTGC  350

seq1  TCTTTAGATCCATCTTAGTGGGTACCACCTGTGACTTTCTCAGTGACGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGATCCATCTTAGTGGGTACCACCTGTGACTTTCTCAGTGACGTT  400

seq1  ACAGGATCCTGGAGACATCAGGACACTCGAACACAGTGATTCAAGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCCTGGAGACATCAGGACACTCGAACACAGTGATTCAAGGCTGT  450

seq1  TGTGATGTCTGTGTCCTGCTCCAGCCCCTTTCAAAGGTTCCTCAAGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTCTGTGTCCTGCTCCAGCCCCTTTCAAAGGTTCCTCAAGGGCT  500

seq1  CAAGATATGTCTATTCATTGGCAGAGTGTCTGCCTAGCATACATGAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATGTCTATTCATTGGCAGAGTGTCTGCCTAGCATACATGAAATC  550

seq1  CAGCACTGTTAAAAGTTAGCTTAGCCAGTAAAGTGCCTACTGTGTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGTTAAAAGTTAGCTTAGCCAGTAAAGTGCCTACTGTGTGTGTT  600

seq1  AGGACCTGAGTGTGATCCCAGATCCCACATTAAAAACTGGACCTGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTGAGTGTGATCCCAGATCCCACATTAAAAACTGGACCTGCAAGT  650

seq1  GCATGCTTATAAACCTATCGCTGCAAGTAGAGACAGTTGGATCCCTGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTATAAACCTATCGCTGCAAGTAGAGACAGTTGGATCCCTGGAA  700

seq1  CATGCTAATTTAGCCAGTCTGGCAACTCCCAGGACAGATGAGACACTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAATTTAGCCAGTCTGGCAACTCCCAGGACAGATGAGACACTGCA  750

seq1  AGCAAAGGACTTTGTTCCATACTCTGCTGCATTTTAATAATGTACTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGACTTTGTTCCATACTCTGCTGCATTTTAATAATGTACTGGAA  800

seq1  TAACTGTTTATGTTTATTTATTTATATCCTTCATCCCTGTCTTAGCTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTTATGTTTATTTATTTATATCCTTCATCCCTGTCTTAGCTATG  850

seq1  TTTCTACTGTTGTGATAAAAACACTGACCAGAAGCCGCTTGGGGAGGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTTGTGATAAAAACACTGACCAGAAGCCGCTTGGGGAGGAAA  900

seq1  GGGCTTATTTGGCTTCTATATCCCCAGGGCCAGGGCAGGAACACAGGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATTTGGCTTCTATATCCCCAGGGCCAGGGCAGGAACACAGGCAG  950

seq1  GAACCTAGAGGCAGGAACCACAGCTCACACTTGGCCACAGAGGAATGCTA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAACCTAGAGGCAGGAACCACAGCTCACACTTGGTCACAGAGGAATGCTA  1000

seq1  CATACTGATATGCA-TCTTATGGCTTGCTTAGTGTGATGGTTTGTAT-AT  1048
      |||||||||||||| ||||||||| |||||||||||||||||||||| ||
seq2  CATACTGATATGCATTCTTATGGC-TGCTTAGTGTGATGGTTTGTATAAT  1049

seq1  TCTTGGACCAGGGAGTGGCACCATTTGGAGGT-GTAACCTTGTTGGAATA  1097
      ||||||| ||||||||||||||| |||||||| ||||||||| | |||||
seq2  TCTTGGAACAGGGAGTGGCACCAATTGGAGGTGGTAACCTTGGTCGAATA  1099

seq1  GGTGTG-ACCTGGTT-GGAGTAGGTGTGTCACTTTGGGTGTGGGCTCAAG  1145
      |||||| ||||| || |||||||||| |||||||||||||||||  | ||
seq2  GGTGTGAACCTGATTGGGAGTAGGTG-GTCACTTTGGGTGTGGGGCCTAG  1148

seq1  ATCCTCACCCTAG-ATGCCTTTAAGTC-AGTCTTCCACTAGCAGCCT  1190
      |||||   ||||| ||||| || |||| |||||  || |||||||||
seq2  ATCCT--ACCTAGAATGCC-TTCAGTCTAGTCTCACATTAGCAGCCT  1192