BAC Information

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BAC

Clone NameB6Ng01-313D20
Chromosome5 (Build37)
Map Location 28,034,673 - 28,035,805
singlet/doubletsinglet
Overlap geneDpp6
Upstream geneB930011P16Rik, Speer4b
Downstream genePaxip1, Htr5a, EG433862, LOC231069, Insig1, En2, Cnpy1, Prr8, Shh, LOC100039258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313D20.bB6Ng01-313D20.g
ACCGA104508GA104509
length1,1931,128
definitionB6Ng01-313D20.b B6Ng01-313D20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgagattttcaaagaagagttaacaccaataatccttaaact
attctacaaaatgaaaacagaaggaacacagtctaactcattctatgaaa
ctttaattaccataataacccccaaacacaataactcaacaaagaaagaa
aattacaaacctatttcctttatgaccatagatgaaaattctcaataaat
atttgcaaactgaatctaagagcacatcaaaatgatcattaaccatcata
aagtattttcatgccagagatgcagggacaattcaacatatgtaaattga
tgaatgtaatcaatcatataaagaagctgaaatacaaaagccacatggtc
atctcattagatgcagaaaaggccttggacaatccaacactccttcatga
tagaagtcctggagagattagggattcaagggacgtactcccacataata
aaatcagtttacagcaagtccatggtgaacatcaacttaaatggaaagaa
actcaaagcaattcactaaaatcaggaacaagacaaaattgtccactccc
tacatatctattcaatgtacttcttggtcttagctggagcaataagacaa
ttgaaggaaatcaggaagatacaaactggaaaggaataagtcaaagtatc
tttatttacagattatatgataatatatgtaaatgaccctaaaaatccca
ttgggaaatgtctatagatggtaaacattttcagaaaagcagctggatac
agattaactcataaaaatcagtagccctcttgtatacaaatgacaaatgg
actgagaaagagatcagggaaacacctttcacaatagccttaaataagag
aatatcttagggtaactctaaccaagcaagtgaaagacttgtatggtaaa
aaaaaaaaatcttcataatattgaagaaagaaattgaaaaagataccaga
agatgggaaagatctcctatgctcatgaattggtaggatttgcacagtaa
aaatgaccatcctaccaaaagcactacagattcaatgtattcccatcaaa
gtctacacaaacattcacaggatatttttagcttcatatgaacacacgca
taccacatatccagaattaaaaataccctgaataataggactcagagaac
cattcctaactcagtgtccttataaaggcctattggtatttga
gaattcacacatggagcagggaatggttagcagtcatccctcggtttcct
caggcaggctgagctctggcaccttacagagcattggattcctgaaaccc
ctggagtgtctctcagtccagtttcatttgtcttggaaggatggcaagag
accacacaggggtgggcagggggaaggagcttcaggcagaaccagcgtct
gccaaaggtgaaaggtgaaagccgtagctgctggacggccatgtgtgctt
ggcagcttgccaagcgttttcagctgcttatcagctcctcacaggcacag
gaactcccccgccccaccctaccaaaagtatgccattcctgctcccacag
atggtggagatcgtggagtcacacaatgctgtgtgttacccacagcagcc
atgaattaactaacctctgatgccttcaagaaacaagactgtgggatggt
tttgttttcaagggctcatgaaagaccccaacgttcctcataggaccata
gctttaaaatattttctgatcctagcctagacacgctaaaggcagagccc
cttgaaaacagttcccttttacattgagccacaagccaaccctacatgta
accttaaagaaagcaaagaaaaggaagacctgtgggcttactaggcatga
gagggtgaaatggggtcgcacagccatttcagcaggtgagcaaaatgggc
ttccttccttccagctgaagagatttctgacgtggtatttgtgtgttgta
acctgaaaatgaagagccatgcagataacccaacaatacagtcacctagc
caccatgcatgagggggtaagccctcaaattgcaaaacattgctcttggg
acattgctatctgtgactatggtcaccaactccaagtctctaaagaccag
ataacttacaggtttaaagcaagaaatctgggagtgggttaactgataag
gccaccacagtctggtgtcttctctgctgacattgcctggtggtggtggc
tgttttccccacagaataagtggtattgcttttctgaaccaacagactac
atgatcacaccaatgcatactgaaaggaggtgggcagaatggagcatgaa
gatctctgatctgaccatatttctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_28034673_28035805
seq2: B6Ng01-313D20.g_67_1194

seq1  GAATTCACACATGGAGCAGGGAATGGTTAGCAGTCATCCCTCGGTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATGGAGCAGGGAATGGTTAGCAGTCATCCCTCGGTTTCCT  50

seq1  CAGGCAGGCTGAGCTCTGGCACCTTACAGAGCATTGGATTCCTGAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCTGAGCTCTGGCACCTTACAGAGCATTGGATTCCTGAAACCC  100

seq1  CTGGAGTGTCTCTCAGTCCAGTTTCATTTGTCTTGGAAGGATGGCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTGTCTCTCAGTCCAGTTTCATTTGTCTTGGAAGGATGGCAAGAG  150

seq1  ACCACACAGGGGTGGGCAGGGGGAAGGAGCTTCAGGCAGAACCAGCGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGGGGTGGGCAGGGGGAAGGAGCTTCAGGCAGAACCAGCGTCT  200

seq1  GCCAAAGGTGAAAGGTGAAAGCCGTAGCTGCTGGACGGCCATGTGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGTGAAAGGTGAAAGCCGTAGCTGCTGGACGGCCATGTGTGCTT  250

seq1  GGCAGCTTGCCAAGCGTTTTCAGCTGCTTATCAGCTCCTCACAGGCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTGCCAAGCGTTTTCAGCTGCTTATCAGCTCCTCACAGGCACAG  300

seq1  GAACTCCCCCGCCCCACCCTACCAAAAGTATGCCATTCCTGCTCCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCCCGCCCCACCCTACCAAAAGTATGCCATTCCTGCTCCCACAG  350

seq1  ATGGTGGAGATCGTGGAGTCACACAATGCTGTGTGTTACCCACAGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGAGATCGTGGAGTCACACAATGCTGTGTGTTACCCACAGCAGCC  400

seq1  ATGAATTAACTAACCTCTGATGCCTTCAAGAAACAAGACTGTGGGATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAACTAACCTCTGATGCCTTCAAGAAACAAGACTGTGGGATGGT  450

seq1  TTTGTTTTCAAGGGCTCATGAAAGACCCCAACGTTCCTCATAGGACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCAAGGGCTCATGAAAGACCCCAACGTTCCTCATAGGACCATA  500

seq1  GCTTTAAAATATTTTCTGATCCTAGCCTAGACACGCTAAAGGCAGAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAATATTTTCTGATCCTAGCCTAGACACGCTAAAGGCAGAGCCC  550

seq1  CTTGAAAACAGTTCCCTTTTACATTGAGCCACAAGCCAACCCTACATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAACAGTTCCCTTTTACATTGAGCCACAAGCCAACCCTACATGTA  600

seq1  ACCTTAAAGAAAGCAAAGAAAAGGAAGACCTGTGGGCTTACTAGGCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAGAAAGCAAAGAAAAGGAAGACCTGTGGGCTTACTAGGCATGA  650

seq1  GAGGGTGAAATGGGGTCGCACAGCCATTTCAGCAGGTGAGCAAAATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAAATGGGGTCGCACAGCCATTTCAGCAGGTGAGCAAAATGGGC  700

seq1  TTCCTTCCTTCCAGCTGAAGAGATTTCTGACGTGGTATTTGTGTGTTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTCCAGCTGAAGAGATTTCTGACGTGGTATTTGTGTGTTGTA  750

seq1  ACCTGAAAATGAAGAGCCATGCAGATAACCCAACAATACAGTCACCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAATGAAGAGCCATGCAGATAACCCAACAATACAGTCACCTAGC  800

seq1  CACCATGCATGAGGGGGTAAGCCCTCAAATTGCAAAACATTGCTCTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCATGAGGGGGTAAGCCCTCAAATTGCAAAACATTGCTCTTGGG  850

seq1  ACATTGCTATCTGTGACTATGGTCACCAACTCCAAGTCTCTAAAGACCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTATCTGTGACTATGGTCACCAACTCCAAGTCTCTAAAGACCAG  900

seq1  ATAACTTACAGG-TTAAAGCAAGAAATCTGGGAGTGGGTTAACTGATAAA  949
      |||||||||||| |||||||||||||||||||||||||||||||||| ||
seq2  ATAACTTACAGGTTTAAAGCAAGAAATCTGGGAGTGGGTTAACTGAT-AA  949

seq1  GGCCA-CACAGTCTGGTGTCTTCTCTGCTGACATTGCCTGGTTGGTGTGG  998
      ||||| |||||||||||||||||||||||||||||||||||| |  ||||
seq2  GGCCACCACAGTCTGGTGTCTTCTCTGCTGACATTGCCTGGTGGTGGTGG  999

seq1  CTGTTTTCCCCCACAG-ATAAGTGGTATTGCTTTTCTTGAACCCAACAGA  1047
      ||||||| |||||||| ||||||||||||||||||| |||| ||||||||
seq2  CTGTTTT-CCCCACAGAATAAGTGGTATTGCTTTTC-TGAA-CCAACAGA  1046

seq1  CTTACAATGGATCACACCAATGCCATACTGAAAAGGAGGTGGGCAG-ATG  1096
      | ||||   ||||||||||||| ||||||| ||||||||||||||| |||
seq2  C-TACA--TGATCACACCAATG-CATACTG-AAAGGAGGTGGGCAGAATG  1091

seq1  GAGCATAGAGATCTCTGATCTGCCCATATTTCTGATT  1133
      ||||||  |||||||||||||| ||||||||||||||
seq2  GAGCATGAAGATCTCTGATCTGACCATATTTCTGATT  1128