BAC Information

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BAC

Clone NameB6Ng01-313F21
Chromosome5 (Build37)
Map Location 96,634,425 - 96,793,399
singlet/doubletdoublet
Overlap geneMrpl1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313F21.bB6Ng01-313F21.g
ACCGA104600GA104601
length5281,045
definitionB6Ng01-313F21.b B6Ng01-313F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,792,866 - 96,793,399)(96,634,425 - 96,635,458)
sequence
cctaattggctacctacatcatattaaaacaaaataaaagaactctgaac
aacagatgtcttaattaattgcacttagagtattaagccatctacccaag
gggccagagggatgacgattaaggtgaatgccaagcacagggtcctgagc
tcaacccccaccctccacataaaaagcttggcaccggggagtgtgctttt
aatcctagcactgtggaagtggagacaggcaaatcctcagggctcacagg
ccggccagcctagtgtagtcggtgagtccaggtaccagcaatagacctca
cctcaaaagaaaatcaggatgggcagcaccttaggacaaagaacaaatga
agttgtcctctggcctctacatatattacacacacacatacacacacaca
cacacacacacacacacacacacacactacaaccaaagctaaaaatgttg
atcttgaagttatacactagaacagtggtcaccagttttttgaagggtgt
catagaaagaatggggggagggggaggg
gaattcagcctcaacacgaattaaaagaagtttcaaataactgggtctgg
aaagttttatctaagtgagagaggaaatttagaccagaaacagatgtagg
tgggtaggacaggaaggtttctctctccactgaagatggaagccatgaag
tacagactcagaaatgcaggactctacttaagcttattccttattaggcg
agtctatgcaaaacaatatgttttagaattaatgatagtgatgtagattt
tgtcccagcatttgggaggctgtggcgggaacacttctgccagtctgggc
aatgtagtaagtttcaggcctgcctgatgtgcagtgtagaaaccctttct
caaaaacacaaagacaaacaagcaaataaactgaaagaaataccgatttt
gttatttgctgtattctgggacctttgtactttaagtagaacctatgggc
tagccacattgtccgttcctagaaatcagcctctctgatcttgttaaaga
tttatctattaacctatgttttaatcagatttcctggtgacttaatcaga
ttttccggtgactttagtattcatacatcttgagaagtgtgggccaagaa
agaattggtttggtttagaggtctttaaaagctttttttactaggaaact
ttaaatagcatagtatagccatatgagaaccaagttaaaaattatcaagg
gtttgttgacctggttgactttaagattaacagcttgaaactaattattg
tgagagaattaacagcatgaaaatgtgcaagtgttacaaattcatttcct
ttgtactgtagaaccagttgttaagctttttcttagtcctagcactgcac
atgttctgaatccccttagttcaatctgtaatttaagccagactcctaga
gaaccaaagaagctcctgccttctgagagacaagataatatgagttctac
tatgtcactcacggaactttccaactttttatactgaattgctatcattc
tggggtagtaaaacgttaacccataaacctgattcttgaaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96792866_96793399
seq2: B6Ng01-313F21.b_48_581 (reverse)

seq1  CCCTCCCCCTCCCCCCATTCTTTCTATGACACCCTTCAAAAAACTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTCCCCCCATTCTTTCTATGACACCCTTCAAAAAACTGGTGA  50

seq1  CCACTGTTCTAGTGTATAACTTCAAGATCAACATTTTTAGCTTTGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTTCTAGTGTATAACTTCAAGATCAACATTTTTAGCTTTGGTTGT  100

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTG  150

seq1  TAATATATGTAGAGGCCAGAGGACAACTTCATTTGTTCTTTGTCCTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGTAGAGGCCAGAGGACAACTTCATTTGTTCTTTGTCCTAAGG  200

seq1  TGCTGCCCATCCTGATTTTCTTTTGAGGTGAGGTCTATTGCTGGTACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCATCCTGATTTTCTTTTGAGGTGAGGTCTATTGCTGGTACCTG  250

seq1  GACTCACCGACTACACTAGGCTGGCCGGCCTGTGAGCCCTGAGGATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCGACTACACTAGGCTGGCCGGCCTGTGAGCCCTGAGGATTTGC  300

seq1  CTGTCTCCACTTCCACAGTGCTAGGATTAAAAGCACACTCCCCGGTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCACTTCCACAGTGCTAGGATTAAAAGCACACTCCCCGGTGCCA  350

seq1  AGCTTTTTATGTGGAGGGTGGGGGTTGAGCTCAGGACCCTGTGCTTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTATGTGGAGGGTGGGGGTTGAGCTCAGGACCCTGTGCTTGGCA  400

seq1  TTCACCTTAATCGTCATCCCTCTGGCCCCTTGGGTAGATGGCTTAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTAATCGTCATCCCTCTGGCCCCTTGGGTAGATGGCTTAATACT  450

seq1  CTAAGTGCAATTAATTAAGACATCTGTTGTTCAGAGTTCTTTTATTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGCAATTAATTAAGACATCTGTTGTTCAGAGTTCTTTTATTTTGT  500

seq1  TTTAATATGATGTAGGTAGCCAATTAGGGAATTC  534
      ||||||||||||||||||||||||||||||||||
seq2  TTTAATATGATGTAGGTAGCCAATTAGGGAATTC  534

seq1: chr5_96634425_96635458
seq2: B6Ng01-313F21.g_66_1110

seq1  GAATTCAGCCTCAACACGAATTAAAAGAAGTTTCAAATAACTGGGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCAACACGAATTAAAAGAAGTTTCAAATAACTGGGTCTGG  50

seq1  AAAGTTTTATCTAAGTGAGAGAGGAAATTTAGACCAGAAACAGATGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTATCTAAGTGAGAGAGGAAATTTAGACCAGAAACAGATGTAGG  100

seq1  TGGGTAGGACAGGAAGGTTTCTCTCTCCACTGAAGATGGAAGCCATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGGACAGGAAGGTTTCTCTCTCCACTGAAGATGGAAGCCATGAAG  150

seq1  TACAGACTCAGAAATGCAGGACTCTACTTAAGCTTATTCCTTATTAGGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTCAGAAATGCAGGACTCTACTTAAGCTTATTCCTTATTAGGCG  200

seq1  AGTCTATGCAAAACAATATGTTTTAGAATTAATGATAGTGATGTAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGCAAAACAATATGTTTTAGAATTAATGATAGTGATGTAGATTT  250

seq1  TGTCCCAGCATTTGGGAGGCTGTGGCGGGAACACTTCTGCCAGTCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCATTTGGGAGGCTGTGGCGGGAACACTTCTGCCAGTCTGGGC  300

seq1  AATGTAGTAAGTTTCAGGCCTGCCTGATGTGCAGTGTAGAAACCCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAAGTTTCAGGCCTGCCTGATGTGCAGTGTAGAAACCCTTTCT  350

seq1  CAAAAACACAAAGACAAACAAGCAAATAAACTGAAAGAAATACCGATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACACAAAGACAAACAAGCAAATAAACTGAAAGAAATACCGATTTT  400

seq1  GTTATTTGCTGTATTCTGGGACCTTTGTACTTTAAGTAGAACCTATGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGCTGTATTCTGGGACCTTTGTACTTTAAGTAGAACCTATGGGC  450

seq1  TAGCCACATTGTCCGTTCCTAGAAATCAGCCTCTCTGATCTTGTTAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACATTGTCCGTTCCTAGAAATCAGCCTCTCTGATCTTGTTAAAGA  500

seq1  TTTATCTATTAACCTATGTTTTAATCAGATTTCCTGGTGACTTAATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTATTAACCTATGTTTTAATCAGATTTCCTGGTGACTTAATCAGA  550

seq1  TTTTCCGGTGACTTTAGTATTCATACATCTTGAGAAGTGTGGGCCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGTGACTTTAGTATTCATACATCTTGAGAAGTGTGGGCCAAGAA  600

seq1  AGAATTGGTTTGGTTTAGAGGTCTTTAAAAGCTTTTTTTACTAGGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGGTTTGGTTTAGAGGTCTTTAAAAGCTTTTTTTACTAGGAAACT  650

seq1  TTAAATAGCATAGTATAGCCATATGAGAACCAAGTTAAAAATTATCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCATAGTATAGCCATATGAGAACCAAGTTAAAAATTATCAAGG  700

seq1  GTTTGTTGACCTGGTTGACTTTAAGATTAACAGCTTGAAACTAATTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGACCTGGTTGACTTTAAGATTAACAGCTTGAAACTAATTATTG  750

seq1  TGAGAGAATTTACAGCATGAAAATGTGCAAGTGTTACAAATTCATTTCCT  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATTAACAGCATGAAAATGTGCAAGTGTTACAAATTCATTTCCT  800

seq1  TTGTACTGTAGAACCAGTTGTTAAGC-TTTTCTTAG-CCTAGCACTGCAC  848
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  TTGTACTGTAGAACCAGTTGTTAAGCTTTTTCTTAGTCCTAGCACTGCAC  850

seq1  A-GTTCTGAATCCCC-TAGTTCAATCTGTAA-TTAAGCCAGACTCCTAGA  895
      | ||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  ATGTTCTGAATCCCCTTAGTTCAATCTGTAATTTAAGCCAGACTCCTAGA  900

seq1  GAACCAAAGAAGCTCCTGCC-TCTGAGAGACAAGATAATATGAGTTCTAC  944
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAACCAAAGAAGCTCCTGCCTTCTGAGAGACAAGATAATATGAGTTCTAC  950

seq1  TATGTCACTCACGGAAC-TTCCAAC-TTTTATACTGAAATGCTATCATTC  992
      ||||||||||||||||| ||||||| |||||||||||| |||||||||||
seq2  TATGTCACTCACGGAACTTTCCAACTTTTTATACTGAATTGCTATCATTC  1000

seq1  T-GGGTAGTAAAAACGTTAA-CCAT-AACCTGATTC-TGAAATGGC  1034
      | ||||||| |||||||||| |||| |||||||||| |||||||||
seq2  TGGGGTAGT-AAAACGTTAACCCATAAACCTGATTCTTGAAATGGC  1045