BAC Information

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BAC

Clone NameB6Ng01-313M07
Chromosome5 (Build37)
Map Location 125,759,560 - 125,909,213
singlet/doubletdoublet
Overlap geneScarb1, Ubc, Dhx37
Upstream geneMphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
Downstream geneBri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313M07.bB6Ng01-313M07.g
ACCGA104886GA104887
length3121,097
definitionB6Ng01-313M07.b B6Ng01-313M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,759,560 - 125,759,871)(125,908,143 - 125,909,213)
sequence
agaatgagagacagaccaaaaagaagcagaggatcaggtcattttcttaa
aggctactgtgttcacagcagctggccggacagccaaccctgcctgccaa
cccccaacccccttgccttacagaaatgcccatccacccagagggacgtt
attcatataataataccctttggtctagcggcacgtctgtttccattcta
tagcaatcagcagcagcctctagggaccacccccacacccaggtgcatgg
cagagtgtggggccccaccgaatttcacttagccaggcactggggggtcg
ggggggggaggg
gaattcagttggcagaagagttgccgaggcgatgcagaactctagtgtcc
tcttcacctggggcccctgctctgtcagcatttctaggtggtacttgtcc
ctgttgtctgagctcaggctttccctggacttaaccagtctattcaggaa
tgatatgcagctcagaaacccccctctcccccctaggagaattttcctca
ttctgatagcatctcttggagatgggtcccagctgtgtactgagttctgc
taggtcaccatcagtgctgtgcagtgtgggctgccccctggctgacttgt
ggctatgctgtactgacaccaggcaggcgatgtttgtaccctgttttctg
ggtctcgccttcagtgactagtgacgttgaagtgtatgttgatggctccg
ggacagacagtcatgggtaatgtatcttcttccccagtgaggacagcatc
atcggtgtcacagaaccccgccgagtggccgcagtagccatgtcccagcg
ggtggccaaggagatgaacctgtcacatcggtgaggccctgattcctggg
gatataggggactttgcaggcttgctgggaggagggtgcaggtgggagtc
gttttgcctcactcccagggatggtccagcagagacctctccacctgctg
aggcaggggtttccgggcagggaaggagccatccaggcaggcacccagtg
cttgctgatggatactgcctgtgtaggagcgaggctagaagcaagtgaca
gcctgctagtcagccagtggtgtaaaggcgtgtaaacacagaattcagtc
cctgaaaccctctgccctggttacatttcttttacacaatggcactggga
atggaagttgggggccttgtgtgtgctaggcagccactctgcttaacaag
tttccctcctcggccaggccttacatttttaactttttttacttgtaaaa
tgtttaatatgttccaataataaattggaagagcataaatgagcctcaag
gtacctgagggtgtcagtagctgcttgcctgttgttccagccctgcagcg
tctctaccggaattgtcagaatatatggcctctgggatgttaaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125759560_125759871
seq2: B6Ng01-313M07.b_53_364

seq1  AGAATGAGAGACAGACCAAAAAGAAGCAGAGGATCAGGTCATTTTCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGAGACAGACCAAAAAGAAGCAGAGGATCAGGTCATTTTCTTAA  50

seq1  AGGCTACTGTGTTCACAGCAGCTGGCCGGACAGCCAACCCTGCCTGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTGTGTTCACAGCAGCTGGCCGGACAGCCAACCCTGCCTGCCAA  100

seq1  CCCCCAACCCCCTTGCCTTACAGAAATGCCCATCCACCCAGAGGGACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAACCCCCTTGCCTTACAGAAATGCCCATCCACCCAGAGGGACGTT  150

seq1  ATTCATATAATAATACCCTTTGGTCTAGCGGCACGTCTGTTTCCATTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATAATAATACCCTTTGGTCTAGCGGCACGTCTGTTTCCATTCTA  200

seq1  TAGCAATCAGCAGCAGCCTCTAGGGACCACCCCCACACCCAGGTGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATCAGCAGCAGCCTCTAGGGACCACCCCCACACCCAGGTGCATGG  250

seq1  CAGAGTGTGGGGCCCCACCGAATTTCACTTAGCCAGGCACTGGGGGGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGGGGCCCCACCGAATTTCACTTAGCCAGGCACTGGGGGGTCG  300

seq1  GGGGGGGGAGGG  312
      ||||||||||||
seq2  GGGGGGGGAGGG  312

seq1: chr5_125908143_125909213
seq2: B6Ng01-313M07.g_65_1161 (reverse)

seq1  AACTTT-ACAT-CCAGA-GCCATATA--CTGACAA-TACGGTAGAGACGC  44
      |||||| |||| ||||| ||||||||  ||||||| | ||||||||||||
seq2  AACTTTAACATCCCAGAGGCCATATATTCTGACAATTCCGGTAGAGACGC  50

seq1  TGCA-GGCTGGA--CACAGGC-AGCAGCTACTGACACCCTCAGGTACC-T  89
      |||| |||||||   |||||| |||||||||||||||||||||||||| |
seq2  TGCAGGGCTGGAACAACAGGCAAGCAGCTACTGACACCCTCAGGTACCTT  100

seq1  GAGGCTCA-TTATGCTCT--CAATTTAATATTGG-ACATA-TAAACATTT  134
      |||||||| |||||||||  ||||||| |||||| ||||| |||||||||
seq2  GAGGCTCATTTATGCTCTTCCAATTTATTATTGGAACATATTAAACATTT  150

seq1  TAC-AGT-AAAAAAGTTAAAAATGTAAGG-CTGG-CGAGGAGG--AACTT  178
      ||| ||| ||||||||||||||||||||| |||| ||||||||  |||||
seq2  TACAAGTAAAAAAAGTTAAAAATGTAAGGCCTGGCCGAGGAGGGAAACTT  200

seq1  GGT-AGCAGAGTGGCTGCCTAGCACACACAAGG-CCCCAACTTCCATTCC  226
      | | ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTAAGCAGAGTGGCTGCCTAGCACACACAAGGCCCCCAACTTCCATTCC  250

seq1  CAGTGCCATTGTGT-AAAGAAATGTAACCAGGGCAGAGGGTTTCA-GGAC  274
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  CAGTGCCATTGTGTAAAAGAAATGTAACCAGGGCAGAGGGTTTCAGGGAC  300

seq1  TGAATTCTGTGTTTACACGGCCTTACACCACTGGCTGACTAGCAGGCTGT  324
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  TGAATTCTGTGTTTACACGCCTTTACACCACTGGCTGACTAGCAGGCTGT  350

seq1  CACTTGCTTCTAGCCTCGCTCCTACACAGGCAGTATCCATCAGCAAGCAC  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCTTCTAGCCTCGCTCCTACACAGGCAGTATCCATCAGCAAGCAC  400

seq1  TGGGTGCCTGCCTGGATGGCTCCTTCCCTGCCCGGAAACCCCTGCCTCAG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCTGCCTGGATGGCTCCTTCCCTGCCCGGAAACCCCTGCCTCAG  450

seq1  CAGGTTGAGAGGTCTCTGCTGGACCATCCCTGGGAGTGAGGCAAAACGAC  474
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGAGAGGTCTCTGCTGGACCATCCCTGGGAGTGAGGCAAAACGAC  500

seq1  TCCCACCTGCACCCTCCTCCCAGCAAGCCTGCAAAGTCCCCTATATCCCC  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGCACCCTCCTCCCAGCAAGCCTGCAAAGTCCCCTATATCCCC  550

seq1  AGGAATCAGGGCCTCACCGATGTGACAGGTTCATCTCCTTGGCCACCCGC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCAGGGCCTCACCGATGTGACAGGTTCATCTCCTTGGCCACCCGC  600

seq1  TGGGACATGGCTACTGCGGCCACTCGGCGGGGTTCTGTGACACCGATGAT  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATGGCTACTGCGGCCACTCGGCGGGGTTCTGTGACACCGATGAT  650

seq1  GCTGTCCTCACTGGGGAAGAAGACACATTACCCATGACTGTCTGTCCCGG  674
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTGTCCTCACTGGGGAAGAAGATACATTACCCATGACTGTCTGTCCCGG  700

seq1  AGCCATCAACATACACTTCAACGTCACTAGTCACTGAAGGCGAGACCCAG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAACATACACTTCAACGTCACTAGTCACTGAAGGCGAGACCCAG  750

seq1  AAAACAGGGTACAAACATCGCCTGCCTGGTGTCAGTACAGCATAGCCACA  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGTACAAACATCGCCTGCCTGGTGTCAGTACAGCATAGCCACA  800

seq1  AGTCAGCCAGGGGGCAGCCCACACTGCACAGCACTGATGGTGACCTAGCA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAGGGGGCAGCCCACACTGCACAGCACTGATGGTGACCTAGCA  850

seq1  GAACTCAGTACACAGCTGGGACCCATCTCCAAGAGATGCTATCAGAATGA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGTACACAGCTGGGACCCATCTCCAAGAGATGCTATCAGAATGA  900

seq1  GGAAAATTCTCCTAGGGGGGAGAGGGGGGTTTCTGAGCTGCATATCATTC  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATTCTCCTAGGGGGGAGAGGGGGGTTTCTGAGCTGCATATCATTC  950

seq1  CTGAATAGACTGGTTAAGTCCAGGGAAAGCCTGAGCTCAGACAACAGGGA  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGACTGGTTAAGTCCAGGGAAAGCCTGAGCTCAGACAACAGGGA  1000

seq1  CAAGTACCACCTAGAAATGCTGACAGAGCAGGGGCCCCAGGTGAAGAGGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACCACCTAGAAATGCTGACAGAGCAGGGGCCCCAGGTGAAGAGGA  1050

seq1  CACTAGAGTTCTGCATCGCCTCGGCAACTCTTCTGCCAACTGAATTC  1071
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGTTCTGCATCGCCTCGGCAACTCTTCTGCCAACTGAATTC  1097