BAC Information

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BAC

Clone NameB6Ng01-313O20
Chromosome5 (Build37)
Map Location 51,548,249 - 51,697,481
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313O20.bB6Ng01-313O20.g
ACCGA105005GA105006
length1,1281,112
definitionB6Ng01-313O20.b B6Ng01-313O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,548,249 - 51,549,385)(51,696,361 - 51,697,481)
sequence
gaattctttcaacaggctagatttttggcaatattttccacgagtcatta
aataaccattgagtacctggaatgttgacctcgttacacccagttgtgaa
caaagcattctggaagcttccttcaagggaactagaagtgatgccatttt
ctactcccaactaaggctgtgctgggcttgtctgtgcttccttgatcttc
catgtgtttcatacaacgtttttagagttgattgcatctgagttttctct
tcaggaatgtgtttactgtgtgagttaataccccattcattacaacttcc
aggatgattctcccctctgcatatactctgttactttcagttatgtataa
atatctgctgaaataccatctgaagtttttactaaatgaaccgtccccct
tatgtttataatttaggcatactcaaaataatgactttttactcaacaac
aaactgtgtaaacaaaaccgatttcatgggagcataaggagagctaggga
tctaattcagttgtgggaatgcttgctaggatcttataaaacaaaccatg
atgcacacccctataattgtagcagaaacaggtaaaggtaagataatcag
aatttcaaagtcatttgagttcaaggccagtttgaagtacatgaaaccct
agcttaaaaggaacttttactggaattaaaataatcctaccactcattga
tatagtcattataacttcatagtgagtatgcatttgctgtccatcataac
caattaaaatgcagagttggaaaacctaatccaaagagttatctctacaa
aataaagccatgcctaaggctcaggggacattgaggaagaggaggcagaa
agattctaagagccaaagaataaaggtagcttgctctgagattctgtctc
ctaggaataccagatgattcacccataaagtttcactgataagactgtcc
aaatgtgaatgagcaatgatgacaccatggatatgccaaactggatgaga
aagtcctgagactcaaacctacaaaaagactgtagaaatgagaagtctgg
gaggtgaagaagtacttcttttttttttctaatggaaatatttttcttat
tacatttaatggattccccttttcccag

gaattcatggcctttttgaattttaaggactcttatttttgaattttaag
gctccttgggtttcaagaatggggacactcagactgaattactgtcttgg
cctccagcttgtagaacagtctgtggtaattttagcccccccccccaatt
atttgactctattcttctttgaataaatcctgaattgattgtctttattt
ggtatttggtgtcttcgccgtgccttaaatattttaaaaagctcattcaa
attcctaaatgtcatgatatgagcttgtagttgcctccttacaataatcc
actgaactagcaagttgttttcaactttaattttctacattcagccagag
catttaccttttcccaaaatcttccttcaattctgccatattttacaata
tatttcagagcttatttgctgtttatgggttggcagtgtagatatatgtt
actttccttatagtagacactggtgttctgttgtttgtttatagtggttg
ctttctactgagtttatggaagaagtgttgaggtaagaatacctttatat
tatccttaaaaaatgttaaggacattaaaagcaattttttaaaggaagga
attaaggtagagacatgaaaattagactgtatcactaaacttgaatatgt
aaaactacaacaaaaaagctacctagggcagatataaaagagaagtggag
aaatctatagagtagtgaaaagacagttttgaaagaggagtctgtagaaa
agcattgagaatatgcaatgtagagttttactcttttgtgggaaatcaag
aactattaaataaagttcttgcattctttgcctgcatagcaaaaactaga
tacagaatacatgtttagaaggagcaatctagaccttttgcaaaagtctg
aaggtatagtgcatacatgggaattcttttaaaggatatgatactaattt
ctgtgttcattttatgtatttccataataagtgtgtgtgtatggagaaac
ttaaaatagtcagtggtgcagactctgatgtgcctcagaagcaaagaaga
ctttgattcttcttagtgttagaacaaagtaaattcagatgttaatggtg
ctaaggcccacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51548249_51549385
seq2: B6Ng01-313O20.b_48_1175

seq1  GAATTCTTTCAACAGGCTAGATTTTTGGCAATATTTTCCACGAGTCATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAACAGGCTAGATTTTTGGCAATATTTTCCACGAGTCATTA  50

seq1  AATAACCATTGAGTACCTGGAATGTTGACCTCGTTACACCCAGTTGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATTGAGTACCTGGAATGTTGACCTCGTTACACCCAGTTGTGAA  100

seq1  CAAAGCATTCTGGAAGCTTCCTTCAAGGGAACTAGAAGTGATGCCATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTCTGGAAGCTTCCTTCAAGGGAACTAGAAGTGATGCCATTTT  150

seq1  CTACTCCCAACTAAGGCTGTGCTGGGCTTGTCTGTGCTTCCTTGATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCCAACTAAGGCTGTGCTGGGCTTGTCTGTGCTTCCTTGATCTTC  200

seq1  CATGTGTTTCATACAACGTTTTTAGAGTTGATTGCATCTGAGTTTTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTCATACAACGTTTTTAGAGTTGATTGCATCTGAGTTTTCTCT  250

seq1  TCAGGAATGTGTTTACTGTGTGAGTTAATACCCCATTCATTACAACTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATGTGTTTACTGTGTGAGTTAATACCCCATTCATTACAACTTCC  300

seq1  AGGATGATTCTCCCCTCTGCATATACTCTGTTACTTTCAGTTATGTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATTCTCCCCTCTGCATATACTCTGTTACTTTCAGTTATGTATAA  350

seq1  ATATCTGCTGAAATACCATCTGAAGTTTTTACTAAATGAACCGTCCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGCTGAAATACCATCTGAAGTTTTTACTAAATGAACCGTCCCCCT  400

seq1  TATGTTTATAATTTAGGCATACTCAAAATAATGACTTTTTACTCAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAATTTAGGCATACTCAAAATAATGACTTTTTACTCAACAAC  450

seq1  AAACTGTGTAAACAAAACCGATTTCATGGGAGCATAAGGAGAGCTAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTAAACAAAACCGATTTCATGGGAGCATAAGGAGAGCTAGGGA  500

seq1  TCTAATTCAGTTGTGGGAATGCTTGCTAGGATCTTATAAAACAAACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTCAGTTGTGGGAATGCTTGCTAGGATCTTATAAAACAAACCATG  550

seq1  ATGCACACCCCTATAATTGTAGCAGAAACAGGTAAAGGTAAGATAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACCCCTATAATTGTAGCAGAAACAGGTAAAGGTAAGATAATCAG  600

seq1  AATTTCAAAGTCATTTGAGTTCAAGGCCAGTTTGAAGTACATGAAACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAGTCATTTGAGTTCAAGGCCAGTTTGAAGTACATGAAACCCT  650

seq1  AGCTTAAAAGGAACTTTTACTGGAATTAAAATAATCCTACCACTCATTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAAGGAACTTTTACTGGAATTAAAATAATCCTACCACTCATTGA  700

seq1  TATAGTCATTATAACTTCATAGTGAGTATGCATTTGCTGTCCATCATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCATTATAACTTCATAGTGAGTATGCATTTGCTGTCCATCATAAC  750

seq1  CAATTAAAATGCAGAGTTGGAAAACCTAATCCAAAGAGTTATCTCTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAATGCAGAGTTGGAAAACCTAATCCAAAGAGTTATCTCTACAA  800

seq1  AATAAAGCCATGCCTAAGGCTCAGGGGACATTGAGGAAGAGGAGGCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCCATGCCTAAGGCTCAGGGGACATTGAGGAAGAGGAGGCAGAA  850

seq1  AGATTCTAAGAGCCAAAGAAT-AAGGTAGCTTGCTCTGAGATTCTGTCTC  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGATTCTAAGAGCCAAAGAATAAAGGTAGCTTGCTCTGAGATTCTGTCTC  900

seq1  CTAGGAATACCAGATGATTCACCCATAAAGTTTCACTGATAAGACTGTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATACCAGATGATTCACCCATAAAGTTTCACTGATAAGACTGTCC  950

seq1  AAATGTGAAATGAGCAATGATGACACCAATGGATATGCCAAACTGGATGA  999
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  AAATGTG-AATGAGCAATGATGACACC-ATGGATATGCCAAACTGGATGA  998

seq1  AGAAAAGTCCTGGAGACCTCAAACCTACAAAAAGAACTGTAGGAAAATGA  1049
         |||||||| |||| ||||||||||||||||| |||||||  ||||||
seq2  --GAAAGTCCT-GAGA-CTCAAACCTACAAAAAG-ACTGTAG--AAATGA  1041

seq1  GGAAGTCTGGGAGTGGAAGAGGTACTCCTTTTTTTTTTCTATTG--AATA  1097
       ||||||||||||  ||||| ||||| |||||||||||||| ||  ||||
seq2  -GAAGTCTGGGAGGTGAAGAAGTACTTCTTTTTTTTTTCTAATGGAAATA  1090

seq1  TTTTCTTTATTTACATTTTAAATGGTATCCCC-TTTCCCAG  1137
      ||||  ||| ||||||||  |||||  ||||| ||||||||
seq2  TTTTTCTTA-TTACATTT--AATGGATTCCCCTTTTCCCAG  1128


seq1: chr5_51696361_51697481
seq2: B6Ng01-313O20.g_66_1177 (reverse)

seq1  CGTGGCCCCTTAGCACCATTTAACATCTTGATTTTAACTTTG-TCTAACA  49
      |||||  ||||||||||| |||||||||  ||||  |||||| |||||||
seq2  CGTGG-GCCTTAGCACCA-TTAACATCTGAATTT--ACTTTGTTCTAACA  46

seq1  CTAAGAGAAATTCCAAAGTCTTCTGTGC-TCTGAGGCACATTCAGAGTCC  98
      ||||||  |||  ||||||||||| ||| ||||||||||| ||||||| |
seq2  CTAAGAAGAAT--CAAAGTCTTCTTTGCTTCTGAGGCACA-TCAGAGT-C  92

seq1  TGCACCACTGAACTTATTTTAAGTTTCTCCATACACACACAACTTATTAT  148
      |||||||||||   |||||||||||||||||||||||||| |||||||||
seq2  TGCACCACTGA--CTATTTTAAGTTTCTCCATACACACAC-ACTTATTAT  139

seq1  GGAAATACATAAAATGAACACAGAAATTAGTATCATATCCTTTAAAAGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATACATAAAATGAACACAGAAATTAGTATCATATCCTTTAAAAGAA  189

seq1  TT-CCATGTATGCACTATAACCTTCAGACTTTTGCAAAAGGTCTAGATTG  247
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCCATGTATGCACTAT-ACCTTCAGACTTTTGCAAAAGGTCTAGATTG  238

seq1  CTCCTTCTAAACATGTATTCTGTATCTAGTTTTTGCTATGCAGGCAAAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTAAACATGTATTCTGTATCTAGTTTTTGCTATGCAGGCAAAGA  288

seq1  ATGCAAGAACTTTATTTAATAGTTCTTGATTTCCCACAAAAGAGTAAAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGAACTTTATTTAATAGTTCTTGATTTCCCACAAAAGAGTAAAAC  338

seq1  TCTACATTGCATATTCTCAATGCTTTTCTACAGACTCCTCTTTCAAAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTGCATATTCTCAATGCTTTTCTACAGACTCCTCTTTCAAAACT  388

seq1  GTCTTTTCACTACTCTATAGATTTCTCCACTTCTCTTTTATATCTGCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCACTACTCTATAGATTTCTCCACTTCTCTTTTATATCTGCCCT  438

seq1  AGGTAGCTTTTTTGTTGTAGTTTTACATATTCAAGTTTAGTGATACAGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCTTTTTTGTTGTAGTTTTACATATTCAAGTTTAGTGATACAGTC  488

seq1  TAATTTTCATGTCTCTACCTTAATTCCTTCCTTTAAAAAATTGCTTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATGTCTCTACCTTAATTCCTTCCTTTAAAAAATTGCTTTTAA  538

seq1  TGTCCTTAACATTTTTTAAGGATAATATAAAGGTATTCTTACCTCAACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAACATTTTTTAAGGATAATATAAAGGTATTCTTACCTCAACAC  588

seq1  TTCTTCCATAAACTCAGTAGAAAGCAACCACTATAAACAAACAACAGAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATAAACTCAGTAGAAAGCAACCACTATAAACAAACAACAGAAC  638

seq1  ACCAGTGTCTACTATAAGGAAAGTAACATATATCTACACTGCCAACCCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTCTACTATAAGGAAAGTAACATATATCTACACTGCCAACCCAT  688

seq1  AAACAGCAAATAAGCTCTGAAATATATTGTAAAATATGGCAGAATTGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAAATAAGCTCTGAAATATATTGTAAAATATGGCAGAATTGAAG  738

seq1  GAAGATTTTGGGAAAAGGTAAATGCTCTGGCTGAATGTAGAAAATTAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTTGGGAAAAGGTAAATGCTCTGGCTGAATGTAGAAAATTAAAG  788

seq1  TTGAAAACAACTTGCTAGTTCAGTGGATTATTGTAAGGAGGCAACTACAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACAACTTGCTAGTTCAGTGGATTATTGTAAGGAGGCAACTACAA  838

seq1  GCTCATATCATGACATTTAGGAATTTGAATGAGCTTTTTAAAATATTTAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATATCATGACATTTAGGAATTTGAATGAGCTTTTTAAAATATTTAA  888

seq1  GGCACGGCGAAGACACCAAATACCAAATAAAGACAATCAATTCAGGATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGGCGAAGACACCAAATACCAAATAAAGACAATCAATTCAGGATTT  938

seq1  ATTCAAAGAAGAATAGAGTCAAATAATTGGGGGGGGGGGCTAAAATTACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGAAGAATAGAGTCAAATAATTGGGGGGGGGGGCTAAAATTACC  988

seq1  ACAGACTGTTCTACAAGCTGGAGGCCAAGACAGTAATTCAGTCTGAGTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGTTCTACAAGCTGGAGGCCAAGACAGTAATTCAGTCTGAGTGT  1038

seq1  CCCCATTCTTGAAACCCAAGGAGCCTTAAAATTCAAAAATAAGAGTCCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCTTGAAACCCAAGGAGCCTTAAAATTCAAAAATAAGAGTCCTT  1088

seq1  AAAATTCAAAAAGGCCATGAATTC  1121
      ||||||||||||||||||||||||
seq2  AAAATTCAAAAAGGCCATGAATTC  1112


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