BAC Information

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BAC

Clone NameB6Ng01-314C12
Chromosome5 (Build37)
Map Location 54,696,726 - 54,697,829
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314C12.bB6Ng01-314C12.g
ACCGA105175GA105176
length9851,113
definitionB6Ng01-314C12.b B6Ng01-314C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tctttttttcctctttttcttctaatctctctccaggtattcctacctaa
ccttaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagcttgtcctgaatttcatctagaatccgccctatcttaaccac
ttgataacatgtgaaaaggaacaaaagggcttttaacactagaaaaaatt
caaggccaaacatattccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaagatcagacttacctcgtaaagctgtactcactggtac
tctcgttccccagctgaaaagttctgaattcatacagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgcgccagtcccgagtttttttctcgtccc
gggtttcagcaccaattgttattagacgcgttctcacgaccggccaggaa
agacgcaacaaaccagaatcttctgcggcaaagctttattgcttacatct
tcaggagccagagtgcaagagagcaagcaaggaaatggcgaaaccccatc
cctttttaaggagaattatcctccacctaggacgtattactccctgattg
gctgcagcccatcggcccagttgtcatcacgggaaaggcagaacacatgg
tgggaaaactgcccctgcatgtgtgcaaactatgtttaccacttagaaca
cagctgtcagtgccatcttataatggcaaatgtgagggcggctccctcac
acctgggtcaagcatatgcaaacccatcgcagttt
gaattctgaatgatccagcatctttaagccgacactacatgattagaaat
agaacatagaggaaagatcaaggagaccttcatgaacatttctggacttg
aaattgtagatttctacagatctaagagtatctctggtaaattattacac
tcaagtatgaatgccacttattaatcatccatattgtttattatatttct
ttcacatctatcttatctatcatgtttttcttgctatctggaaggtattc
tgtttcataaaagtgaaaaaattaagtacatatcttgtattgagcatttt
tgttcaatattccacagcaaaacctaaaatgtaggctcagtcttaagttg
gttctgtactatgtggctgtcctacctcttctgcttagatgtcaaaagac
agttctatacatgaaagcaggcacagatatagagaaaacagtgattcttc
aaaaatcttaatagctcatgctttttctctgtgctgaacattgtacacac
agtgccttagccccaaatatgtcattaatgaataatgaaaggagtgagct
atttggaatcctgagtagttccttgtattctaggtcagattttttttctc
agttcatatgcactcacttactgagggtttatttatttctaacaatgtct
tgagggaaactagttgtctggttactttgtgaatagcaaggtccaagttc
atactctttatgaggttgtgtatgacattgctcctgtttgaaatccatgg
cagcaaatcatattggcagcctacagacattctgaatcattatgatattt
attttgtataaataaaagcaaggacaggcacttactaatgcaaacaagca
tttgaaggggattgctaatgagataaaacaattcagtttatatctctcta
tcacggacagattagccatgcatgatatctcccaataaaagtactatcag
taaattattttagtatttatatttttgtggtgggggtatgctttaataaa
cccagaagttataagggaatggtttacagaatgttaccagcaccgtcagt
aatctgacatgctgccctgtataggacaatagagcacaaattatctttca
ttctctcttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54696726_54697829
seq2: B6Ng01-314C12.g_67_1179

seq1  GAATTCTGAATGATCCAGCATCTTTAAGCCGACACTACATGATTAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGATCCAGCATCTTTAAGCCGACACTACATGATTAGAAAT  50

seq1  AGAACATAGAGGAAAGATCAAGGAGACCTTCATGAACATTTCTGGACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATAGAGGAAAGATCAAGGAGACCTTCATGAACATTTCTGGACTTG  100

seq1  AAATTGTAGATTTCTACAGATCTAAGAGTATCTCTGGTAAATTATTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTAGATTTCTACAGATCTAAGAGTATCTCTGGTAAATTATTACAC  150

seq1  TCAAGTATGAATGCCACTTATTAATCATCCATATTGTTTATTATATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATGAATGCCACTTATTAATCATCCATATTGTTTATTATATTTCT  200

seq1  TTCACATCTATCTTATCTATCATGTTTTTCTTGCTATCTGGAAGGTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTATCTTATCTATCATGTTTTTCTTGCTATCTGGAAGGTATTC  250

seq1  TGTTTCATAAAAGTGAAAAAATTAAGTACATATCTTGTATTGAGCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATAAAAGTGAAAAAATTAAGTACATATCTTGTATTGAGCATTTT  300

seq1  TGTTCAATATTCCACAGCAAAACCTAAAATGTAGGCTCAGTCTTAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATATTCCACAGCAAAACCTAAAATGTAGGCTCAGTCTTAAGTTG  350

seq1  GTTCTGTACTATGTGGCTGTCCTACCTCTTCTGCTTAGATGTCAAAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTACTATGTGGCTGTCCTACCTCTTCTGCTTAGATGTCAAAAGAC  400

seq1  AGTTCTATACATGAAAGCAGGCACAGATATAGAGAAAACAGTGATTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATACATGAAAGCAGGCACAGATATAGAGAAAACAGTGATTCTTC  450

seq1  AAAAATCTTAATAGCTCATGCTTTTTCTCTGTGCTGAACATTGTACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTAATAGCTCATGCTTTTTCTCTGTGCTGAACATTGTACACAC  500

seq1  AGTGCCTTAGCCCCAAATATGTCATTAATGAATAATGAAAGGAGTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTAGCCCCAAATATGTCATTAATGAATAATGAAAGGAGTGAGCT  550

seq1  ATTTGGAATCCTGAGTAGTTCCTTGTATTCTAGGTCAGATTTTTTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATCCTGAGTAGTTCCTTGTATTCTAGGTCAGATTTTTTTTCTC  600

seq1  AGTTCATATGCACTCACTTACTGAGGGTTTATTTATTTCTAACAATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATATGCACTCACTTACTGAGGGTTTATTTATTTCTAACAATGTCT  650

seq1  TGAGGGAAACTAGTTGTCTGGTTACTTTGTGAATAGCAAGGTCCAAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAAACTAGTTGTCTGGTTACTTTGTGAATAGCAAGGTCCAAGTTC  700

seq1  ATACTCTTTATGAGGTTGTGTATGACATTGCTCCTGTTTGAAATCCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTTATGAGGTTGTGTATGACATTGCTCCTGTTTGAAATCCATGG  750

seq1  CAGCAAATCATATTGGCAGCCTACAGACATTCTGAATCATTATGATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATCATATTGGCAGCCTACAGACATTCTGAATCATTATGATATTT  800

seq1  ATTTTGTATAAATAAAAGCAAGGACAGGCACTTACTAATGCAAACAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTATAAATAAAAGCAAGGACAGGCACTTACTAATGCAAACAAGCA  850

seq1  TTTGAAGGGGATTGCTAATGAGATAAAACAATTCAGTTTATATCTCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGGGATTGCTAATGAGATAAAACAATTCAGTTTATATCTCTCTA  900

seq1  TCACGGACAGATTAGCCATGCATGATATCT-CCAATAAAAGTACTATCAG  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCACGGACAGATTAGCCATGCATGATATCTCCCAATAAAAGTACTATCAG  950

seq1  TAAATTA-TTTAGTATTTATA-TTTTGTGGT-GGGGTATGC-TTAATAAA  995
      ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||
seq2  TAAATTATTTTAGTATTTATATTTTTGTGGTGGGGGTATGCTTTAATAAA  1000

seq1  ACCAGAAGTTATAA-GGAATGG-TTACAGAATGTTACCAGCACCCTTCAG  1043
       ||||||||||||| ||||||| ||||||||||||||||||| || ||||
seq2  CCCAGAAGTTATAAGGGAATGGTTTACAGAATGTTACCAGCA-CCGTCAG  1049

seq1  T-ATCTGGACATGCTGCCTTGTTATAGGAC-ATAGAGCACAAATAATC-T  1090
      | |||| ||||||||||| || |||||||| ||||||||||||| ||| |
seq2  TAATCT-GACATGCTGCCCTG-TATAGGACAATAGAGCACAAATTATCTT  1097

seq1  TCA-TCTCTC-TGTGG  1104
      ||| |||||| |||||
seq2  TCATTCTCTCTTGTGG  1113