BAC Information

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BAC

Clone NameB6Ng01-314E08
Chromosome5 (Build37)
Map Location 12,149,470 - 12,243,718
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314E08.bB6Ng01-314E08.g
ACCGA105252GA105253
length5891,130
definitionB6Ng01-314E08.b B6Ng01-314E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,243,124 - 12,243,718)(12,149,470 - 12,150,593)
sequence
atttcaaagttcagccaaggtacatgtcagtctgtgagcccgaatgaacc
aaaaccctctatacttccaagatacttcagatgcttgctaagcatacgct
ccacttaaacaaacaaatcttgacttcacgatactggcggtgttatggta
acacacacatcacatttaagtatgtaggagggaaaacaatctttcggtct
ctcagcaagcccgggcagccagcagaaacgttgtaaaattgtgttggctg
agaagctgaatcaccttcagattgatttgatgcctgattatgacctgaag
ccctttgtcagcagaaagtaagacattagtgagtaatgcatgcaaaccat
gggtggggcttgtaaaatgctcgaggcacaggacagaaatgtggtggagg
gcaactgtgttagctgagagcactgagttcagatttgagcctccaaattg
gaacagggttagagaaattctttatgccacatatatttcctgatctgaga
gacagaacagtttattaatcaaattatggatctataagtgaaggagttgt
tcacctgtttttccttcttttgtgtgtgtgtgtgtgtgt
gaattctctagtcctaagaatactcaaaataatagtttgtaaatattaga
cagtaagtacccttcatgccttcattgataatgactggaggaattaattt
ctttcagaccttctgtcaatgaaatatacagctagtctgcaattaatgaa
agaagcagttttactataaatgaaattaaggtggcactgacatgaaatga
attagtgagcactataacgaccaaaacagaactggttttccataaatatt
agataccttgaatttctatttaattgtatttaatgccaaacattgaggag
taattttccattcccctgcagaaaatgcaatgttttgttctctcctaaaa
tatatttttactgatctctggataaattaaataatcagcaagcatttgag
tgcctagtttgtgtccactgaatcacaaaatatatgtatggcacatacta
cacaaatattattcttttcaaagtatttctttagcaaggacagcaactgg
tttccaactctttaaacctattttctagtcagattctctgataaagtgga
tatgccttaccaaccaactatttaaacaaaatatttaaacagagttttct
gaatattggcttgatgtagtttcttatcataccttggctaaaattcagca
atgtgaagcaaagttgataagtttgccagtatttatacctgaactttgaa
gcttaaggttattttgaatatattttattcaaatatatatgagtcgatta
tacattttatgtattttaaaagattttgatagtacttgctatcaatgtaa
aaacaacctcaaacattttacctcaaagtgttattataccttagtataaa
tattgaagtctttaacgttcaaaatatttcccagaataagctttttatat
tgacataattttttttaaaacttgtccctgaggaaaatcatctgcagata
cagatctccatattcatttccagtcgctaacagtacagcatagctgctgc
cacagcaagctttccagtcgctacagtacagcatagctgctgcacagcca
gcttcagtcgctaacagtacagccatagcctgcctggccacaagggcaaa
gctttccagttcacttaacaggttacagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12243124_12243718
seq2: B6Ng01-314E08.b_44_638 (reverse)

seq1  ACACACACACACACACACAAAAGAAGGAAAAACAGGTGAACAACTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACAAAAGAAGGAAAAACAGGTGAACAACTCCTTC  50

seq1  ACTTATAGATCCATAATTTGATTAATAAACTGTTCTGTCTCTCAGATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGATCCATAATTTGATTAATAAACTGTTCTGTCTCTCAGATCAG  100

seq1  GAAATATATGTGGCATAAAGAATTTCTCTAACCCTGTTCCAATTTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATGTGGCATAAAGAATTTCTCTAACCCTGTTCCAATTTGGAGG  150

seq1  CTCAAATCTGAACTCAGTGCTCTCAGCTAACACAGTTGCCCTCCACCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATCTGAACTCAGTGCTCTCAGCTAACACAGTTGCCCTCCACCACA  200

seq1  TTTCTGTCCTGTGCCTCGAGCATTTTACAAGCCCCACCCATGGTTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTGTGCCTCGAGCATTTTACAAGCCCCACCCATGGTTTGCAT  250

seq1  GCATTACTCACTAATGTCTTACTTTCTGCTGACAAAGGGCTTCAGGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTCACTAATGTCTTACTTTCTGCTGACAAAGGGCTTCAGGTCAT  300

seq1  AATCAGGCATCAAATCAATCTGAAGGTGATTCAGCTTCTCAGCCAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCATCAAATCAATCTGAAGGTGATTCAGCTTCTCAGCCAACACA  350

seq1  ATTTTACAACGTTTCTGCTGGCTGCCCGGGCTTGCTGAGAGACCGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAACGTTTCTGCTGGCTGCCCGGGCTTGCTGAGAGACCGAAAGA  400

seq1  TTGTTTTCCCTCCTACATACTTAAATGTGATGTGTGTGTTACCATAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCCTCCTACATACTTAAATGTGATGTGTGTGTTACCATAACAC  450

seq1  CGCCAGTATCGTGAAGTCAAGATTTGTTTGTTTAAGTGGAGCGTATGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCAGTATCGTGAAGTCAAGATTTGTTTGTTTAAGTGGAGCGTATGCTT  500

seq1  AGCAAGCATCTGAAGTATCTTGGAAGTATAGAGGGTTTTGGTTCATTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATCTGAAGTATCTTGGAAGTATAGAGGGTTTTGGTTCATTCGG  550

seq1  GCTCACAGACTGACATGTACCTTGGCTGAACTTTGAAATGAATTC  595
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAGACTGACATGTACCTTGGCTGAACTTTGAAATGAATTC  595

seq1: chr5_12149470_12150593
seq2: B6Ng01-314E08.g_62_1191

seq1  GAATTCTCTAGTCCTAAGAATACTCAAAATAATAGTTTGTAAATATTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTCCTAAGAATACTCAAAATAATAGTTTGTAAATATTAGA  50

seq1  CAGTAAGTACCCTTCATGCCTTCATTGATAATGACTGGAGGAATTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGTACCCTTCATGCCTTCATTGATAATGACTGGAGGAATTAATTT  100

seq1  CTTTCAGACCTTCTGTCAATGAAATATACAGCTAGTCTGCAATTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGACCTTCTGTCAATGAAATATACAGCTAGTCTGCAATTAATGAA  150

seq1  AGAAGCAGTTTTACTATAAATGAAATTAAGGTGGCACTGACATGAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGTTTTACTATAAATGAAATTAAGGTGGCACTGACATGAAATGA  200

seq1  ATTAGTGAGCACTATAACGACCAAAACAGAACTGGTTTTCCATAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGAGCACTATAACGACCAAAACAGAACTGGTTTTCCATAAATATT  250

seq1  AGATACCTTGAATTTCTATTTAATTGTATTTAATGCCAAACATTGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTGAATTTCTATTTAATTGTATTTAATGCCAAACATTGAGGAG  300

seq1  TAATTTTCCATTCCCCTGCAGAAAATGCAATGTTTTGTTCTCTCCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCATTCCCCTGCAGAAAATGCAATGTTTTGTTCTCTCCTAAAA  350

seq1  TATATTTTTACTGATCTCTGGATAAATTAAATAATCAGCAAGCATTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTACTGATCTCTGGATAAATTAAATAATCAGCAAGCATTTGAG  400

seq1  TGCCTAGTTTGTGTCCACTGAATCACAAAATATATGTATGGCACATACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTTTGTGTCCACTGAATCACAAAATATATGTATGGCACATACTA  450

seq1  CACAAATATTATTCTTTTCAAAGTATTTCTTTAGCAAGGACAGCAACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATTATTCTTTTCAAAGTATTTCTTTAGCAAGGACAGCAACTGG  500

seq1  TTTCCAACTCTTTAAACCTATTTTCTAGTCAGATTCTCTGATAAAGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTCTTTAAACCTATTTTCTAGTCAGATTCTCTGATAAAGTGGA  550

seq1  TATGCCTTACCAACCAACTATTTAAACAAAATATTTAAACAGAGTTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTACCAACCAACTATTTAAACAAAATATTTAAACAGAGTTTTCT  600

seq1  GAATATTGGCTTGATGTAGTTTCTTATCATACCTTGGCTAAAATTCAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTGGCTTGATGTAGTTTCTTATCATACCTTGGCTAAAATTCAGCA  650

seq1  ATGTGAAGCAAAGTTGATAAGTTTGCCAGTATTTATACCTGAACTTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGCAAAGTTGATAAGTTTGCCAGTATTTATACCTGAACTTTGAA  700

seq1  GCTTAAGGTTATTTTGAATATATTTTATTCAAATATATATGAGTCGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGTTATTTTGAATATATTTTATTCAAATATATATGAGTCGATTA  750

seq1  TACATTTTATGTATTTTAAAAGATTTTGATAGTACTTGCTATCAATGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTATGTATTTTAAAAGATTTTGATAGTACTTGCTATCAATGTAA  800

seq1  AAACAACCTCAAACATTTTACCTCAAAGTGTTATTATACCTTAGTATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCTCAAACATTTTACCTCAAAGTGTTATTATACCTTAGTATAAA  850

seq1  TATTGAAGTCTTTAACGTTCAAAATATTTCCCAGAATAAGCTTTTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGTCTTTAACGTTCAAAATATTTCCCAGAATAAGCTTTTTATAT  900

seq1  TGACATAA-TTTTTTTAAAACTTGTCCCTGAGGAAAATCATCTGCAGATA  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAATTTTTTTTAAAACTTGTCCCTGAGGAAAATCATCTGCAGATA  950

seq1  CAGATCTCCATATTCATTTCCAGTCGCTAACAGTACAGCATAGCTGCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCCATATTCATTTCCAGTCGCTAACAGTACAGCATAGCTGCTGC  1000

seq1  CACAGGCAAGCTTTCCAGTCGCTAACAGTACAGCATAGCTGCTGCCACAG  1049
      |||| |||||||||||||||||| |||||||||||||||||||| |||| 
seq2  CACA-GCAAGCTTTCCAGTCGCT-ACAGTACAGCATAGCTGCTG-CACA-  1046

seq1  GCAAGCTTTCCAGTCGCTAACAGTACAG-CATAG-CTGC--TGCCACA--  1093
      || |||||  |||||||||||||||||| ||||| ||||   ||||||  
seq2  GCCAGCTT--CAGTCGCTAACAGTACAGCCATAGCCTGCCTGGCCACAAG  1094

seq1  GGC-AAGCTTTCCAG-TCAC-TAACAG--TACAGTA  1124
      ||| ||||||||||| |||| ||||||  |||||||
seq2  GGCAAAGCTTTCCAGTTCACTTAACAGGTTACAGTA  1130