BAC Information

Click to search

BAC

Clone NameB6Ng01-314F13
Chromosome5 (Build37)
Map Location 18,541,038 - 18,542,162
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314F13.bB6Ng01-314F13.g
ACCGA105308GA105309
length1,1141,164
definitionB6Ng01-314F13.b B6Ng01-314F13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattatttattatttaaatatcatattttagttaagaaaacaaat
catgtgcatggctttacgtattctcactgaatagatgtgcatatcccatc
tgtgatgtattatcctttgaatggaatccttccctaagagttaacgacct
caactcaatccaggtattatatttttttttccctcagattttattgtaag
gaaatgtcaaatgtttacagattgctgagatatataacaacgtaagagaa
atgaaacagagagcagagagctaaaagcattgagatggctgtgtgtcaag
cacttaagaaaattgtctctattgtgacacaatctagggatagaaagttt
taggttaattttatagctagaatgtgaagattattgtgattccttatact
ttccatgtatagtgagttatcccttttctgaaccttaatagtctgtgctt
ccttacctgtggactcttattttccttgcctttctgcagcaggccttgtc
ttgtgagaataacagaaaatggaagttgtgaggctaggacatgaggtact
acgccttactcctcaaactctcagatctgtctgaagactcctgttaactt
tgcagtgtgtacaattaagcagtctcgggaagagtacaaagtacaaggta
aaaagtctggccaacagcattatattgtcaaacttgaatatgcttctttt
caaaggctaactccagtctagcctttcaataactgcagcttgaagtttgg
tggtaatcattggcacagtgtaccagatgagcccttccaaaatgcctcgc
ctacagatttccagaattttaaaggcttttttatttagttgttatttata
tatggtaggcagatgttttgacactaagttcaataccaagccctattatt
attttaagccattgtggtctgaaactatttgttatacattaataggcaca
tatagacaaagacactatagtaagcattgaagcctatatgaagcaacact
tctaagttgtatactacactgctgatattattttgtgtaggtactacata
aatccagtttcatgtttatagtattttataaaaagggaggattactagac
taatgtttttcata
gaattctttgttcagctctgagccccattttttaatgggattatttgatt
ttctggagcctaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggttaggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtctttggccttgcagaagctttgcaattttc
tgaggtcccatttatcgattctcgatcttacagcacaagccatttcttaa
ctctctgcaggcctttgtgtgggattggggctttccgagcttttcctcat
tcacattgacatggctactggggttttccatgctcagctcctgtttagac
aattatgttggtgacactttatgagcatagcttcttaagaaattccatat
ttctctgatttttacaatctttctgccccaccctcattctgcaatattac
ttcacacttaggtgccaaaattgttctgtagatgtattcattgagactga
tcttgacaactctgaattttgattggatctagatttttgcaatcatctcc
atctcttgcaaagagaggtattgttgaataaatgtatggattaattttgc
ctgtggccacaatgacaaatatttaaaatgtaattagggaccagagtgat
ataggaaagagttggctataggttctccttcagctccatggcttttggag
aattggctgggttccttgtatcaggcttgatttccttcttgtggaacaga
tcttaaattcatttacagagttgttggttaccaccaaagattccaagtca
aatactgtcattctgtttgttattgtatttcatagtcttggtaggtctgt
tagattctgcttccctgtcttagttaaggttttacagctgtgaacagacc
atgactaatgcaattcatatatatatatacagggttcagagattcagccc
agtatcatcaaggcaggacatggcagcatctagcaggcattgtttcagga
gaagcttatgagtttctaaatctttcatcttgaaggcttgctaatgcacg
actgactctaaagcagtttaaggttgagggtcttagtacatgctcacagt
gcacacgttcttctggacaggcggtacgcttcttaaatataggccaccca
ctatatcctcgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18541038_18542162
seq2: B6Ng01-314F13.b_45_1158 (reverse)

seq1  TATG-AAAACATAGGTTCTAAGTAATCCCTCCCTTTTATAAATACCTATA  49
      |||| |||||||  | ||| ||||||||  || |||||||||   |||||
seq2  TATGAAAAACATTAG-TCT-AGTAATCCTCCCTTTTTATAAAATACTATA  48

seq1  AACATTGAACCTGGATTTTATGTTAGTTACTTACACAAATAAATATTCAA  99
      |||| |||| ||||| |||||| ||| ||| ||||||||  |||||   |
seq2  AACA-TGAAACTGGA-TTTATG-TAG-TACCTACACAAAATAATAT--CA  92

seq1  GCAGTGTAGTATACAAACTTAGAAGTGTTGCTTTCAATATAGGCTTCAAT  149
      |||||||||||||| ||||||||||||||||||   ||||||||||||||
seq2  GCAGTGTAGTATAC-AACTTAGAAGTGTTGCTT--CATATAGGCTTCAAT  139

seq1  GCTTACTATAGTGTCTTTGTCTATTATGTGCCTATTAATGTATAACAAAT  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTTACTATAGTGTCTTTGTCTA-TATGTGCCTATTAATGTATAACAAAT  188

seq1  AGTTTCAGACCACAATGGCTTAAAATAATAATAGGGCTTGGTATTGAACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGACCACAATGGCTTAAAATAATAATAGGGCTTGGTATTGAACT  238

seq1  TAGTGTCAAAACATCTGCCTACCATATATAAATAACAACTAAATAAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCAAAACATCTGCCTACCATATATAAATAACAACTAAATAAAAAA  288

seq1  GCCTTTAAAATTCTGGAAATCTGTAGGCGAGGCATTTTGGAAGGGCTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAAATTCTGGAAATCTGTAGGCGAGGCATTTTGGAAGGGCTCAT  338

seq1  CTGGTACACTGTGCCAATGATTACCACCAAACTTCAAGCTGCAGTTATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACACTGTGCCAATGATTACCACCAAACTTCAAGCTGCAGTTATTG  388

seq1  AAAGGCTAGACTGGAGTTAGCCTTTGAAAAGAAGCATATTCAAGTTTGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTAGACTGGAGTTAGCCTTTGAAAAGAAGCATATTCAAGTTTGAC  438

seq1  AATATAATGCTGTTGGCCAGACTTTTTACCTTGTACTTTGTACTCTTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGCTGTTGGCCAGACTTTTTACCTTGTACTTTGTACTCTTCCC  488

seq1  GAGACTGCTTAATTGTACACACTGCAAAGTTAACAGGAGTCTTCAGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGCTTAATTGTACACACTGCAAAGTTAACAGGAGTCTTCAGACAG  538

seq1  ATCTGAGAGTTTGAGGAGTAAGGCGTAGTACCTCATGTCCTAGCCTCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAGTTTGAGGAGTAAGGCGTAGTACCTCATGTCCTAGCCTCACA  588

seq1  ACTTCCATTTTCTGTTATTCTCACAAGACAAGGCCTGCTGCAGAAAGGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATTTTCTGTTATTCTCACAAGACAAGGCCTGCTGCAGAAAGGCA  638

seq1  AGGAAAATAAGAGTCCACAGGTAAGGAAGCACAGACTATTAAGGTTCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAAGAGTCCACAGGTAAGGAAGCACAGACTATTAAGGTTCAGA  688

seq1  AAAGGGATAACTCACTATACATGGAAAGTATAAGGAATCACAATAATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATAACTCACTATACATGGAAAGTATAAGGAATCACAATAATCTT  738

seq1  CACATTCTAGCTATAAAATTAACCTAAAACTTTCTATCCCTAGATTGTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTAGCTATAAAATTAACCTAAAACTTTCTATCCCTAGATTGTGT  788

seq1  CACAATAGAGACAATTTTCTTAAGTGCTTGACACACAGCCATCTCAATGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGAGACAATTTTCTTAAGTGCTTGACACACAGCCATCTCAATGC  838

seq1  TTTTAGCTCTCTGCTCTCTGTTTCATTTCTCTTACGTTGTTATATATCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCTCTGCTCTCTGTTTCATTTCTCTTACGTTGTTATATATCTC  888

seq1  AGCAATCTGTAAACATTTGACATTTCCTTACAATAAAATCTGAGGGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGTAAACATTTGACATTTCCTTACAATAAAATCTGAGGGAAAA  938

seq1  AAAAATATAATACCTGGATTGAGTTGAGGTCGTTAACTCTTAGGGAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATAATACCTGGATTGAGTTGAGGTCGTTAACTCTTAGGGAAGGA  988

seq1  TTCCATTCAAAGGATAATACATCACAGATGGGATATGCACATCTATTCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCAAAGGATAATACATCACAGATGGGATATGCACATCTATTCAG  1038

seq1  TGAGAATACGTAAAGCCATGCACATGATTTGTTTTCTTAACTAAAATATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATACGTAAAGCCATGCACATGATTTGTTTTCTTAACTAAAATATG  1088

seq1  ATATTTAAATAATAAATAATGAATTC  1125
      ||||||||||||||||||||||||||
seq2  ATATTTAAATAATAAATAATGAATTC  1114