BAC Information

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BAC

Clone NameB6Ng01-314H13
Chromosome5 (Build37)
Map Location 114,977,778 - 115,120,130
singlet/doubletdoublet
Overlap geneBC057022, Trpv4, Gltp
Upstream geneC530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c, Ssh1, Dao1, Svop, Usp30, Alkbh2, Ung, Acacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk
Downstream geneTchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314H13.bB6Ng01-314H13.g
ACCGA105397GA105398
length9401,100
definitionB6Ng01-314H13.b B6Ng01-314H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,977,778 - 114,978,310)(115,119,055 - 115,120,130)
sequence
gaattctacatcttcatctgaaggcttctaggagaatattgacttccagg
caggtaggatgagggtctttaagcccatgcccacggtgacacacctactc
cgacaaggccacacccactccaaaagggccacacctcctccaacaggggc
agttcctgatagggacagacgctttaaagtggaaagcagcccactctctc
tgtgtctcatgtcaactctgtatgcagtttatttctgggtgtgatcacag
ttacccggaatcacagaaatcctgattctgtattagtaatggagcttagt
tgccagagtgcttgccaagcatgcactaagtcccagggctgatgcccagg
actgaataaaatggatgcacttggaggtggaggcagaagggttaggagtt
caaggtcatccttggttccttgggccaacctgggctacatgagagcctgt
tgaaaaagaagaaaggggaaaggaaaggaggaagagagagaaggacagag
agatggatggatggatggatggatggatggatgtattattatcatccttt
ctaggaccgaaggaatggagctaaagagaaatcaagtggttttctcagga
ctagggtgatggtagagatagcatgtaagaagaaaatcatgttggaagta
caccaaactgcctcagacatgttaagcaggaagaagggttatttctggtt
tgtttgattttgtttctgtttctatcttagtgctgggattgaatccagat
ttccagacaggctcagtaaatgatccagccctgagctacactccccaacc
caagtttttcacgctgtaaatcacaagattatcattttttataggataac
atggtcagatatgtcagccattgcatgtggttcacacacacacacacaaa
accccagaaaataaatactaatgcaccaaaatgataacat
gaattcctagggttttgtcatttcctcccctacctagctcaggaggaact
cagctcaggggcgacatacacctcacccagcaaagaagcccggcccatct
ggcccaggggtgtcttggatgcttgaaggacaatggaagtttgattggaa
gttcagcgggtgccctactgtggcctctgtttaaaaggcaagctggcagg
agcccccctcacggggctcacacatccatctggcataaccagccctgttc
tcgttctctctctctctctcctctctctctctcctctctgtctcactctc
tctctctctcttctcaccccccctctgtcttttgtcaaataatgtttttt
gggtttttttttcccctgaaatgtaccagcaagccttttcaaccaactga
ctaggcgcacacaggtgacccatatgtgactgtatttgcattcttctgca
taattattttcttgggggttggctcttccaacctaagaaactgcctctca
taagagccctccagctgcggagactcaagacactgccttgctgccttaac
cgtccttctggagctgtattttttaaagtattggggtaaacctgccctga
aagaattgatgtatgtttaaaaaaaaaaaaaaaacccaaaaagcccaatg
aggaacgattggtgatttttatgcagaaactaaataatccttaataaata
aatctatattttgaaatcacacctgcatgtgtctgtggcgctttgattct
tttagtattttcggtgtcaaaggtttccagctggggggctgtgagagtta
acccggcactctctgggaaggggggacctgcactgatgaacccaactgcc
ttcctcctgactgacaggcctgtgggcacacctgtgctgcctgctcttga
actgcttaattgatgcaggatgccccgcccaccctgggcgctgccatccc
cttgacaggaaggatcttgggcttgtgtaggaaggctaggaagttaagtg
tttctctgtggtcctctgccttcaggtttgctgccttgactgcacttcta
atgaatggactgtccttgtaaaggcaaataagttctcaacacaaacacat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_114977778_114978310
seq2: B6Ng01-314H13.b_43_575

seq1  GAATTCTACATCTTCATCTGAAGGCTTCTAGGAGAATATTGACTTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCTTCATCTGAAGGCTTCTAGGAGAATATTGACTTCCAGG  50

seq1  CAGGTAGGATGAGGGTCTTTAAGCCCATGCCCACGGTGACACACCTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGGATGAGGGTCTTTAAGCCCATGCCCACGGTGACACACCTACTC  100

seq1  CGACAAGGCCACACCCACTCCAAAAGGGCCACACCTCCTCCAACAGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAAGGCCACACCCACTCCAAAAGGGCCACACCTCCTCCAACAGGGGC  150

seq1  AGTTCCTGATAGGGACAGACGCTTTAAAGTGGAAAGCAGCCCACTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGATAGGGACAGACGCTTTAAAGTGGAAAGCAGCCCACTCTCTC  200

seq1  TGTGTCTCATGTCAACTCTGTATGCAGTTTATTTCTGGGTGTGATCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCATGTCAACTCTGTATGCAGTTTATTTCTGGGTGTGATCACAG  250

seq1  TTACCCGGAATCACAGAAATCCTGATTCTGTATTAGTAATGGAGCTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGGAATCACAGAAATCCTGATTCTGTATTAGTAATGGAGCTTAGT  300

seq1  TGCCAGAGTGCTTGCCAAGCATGCACTAAGTCCCAGGGCTGATGCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAGTGCTTGCCAAGCATGCACTAAGTCCCAGGGCTGATGCCCAGG  350

seq1  ACTGAATAAAATGGATGCACTTGGAGGTGGAGGCAGAAGGGTTAGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATAAAATGGATGCACTTGGAGGTGGAGGCAGAAGGGTTAGGAGTT  400

seq1  CAAGGTCATCCTTGGTTCCTTGGGCCAACCTGGGCTACATGAGAGCCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCATCCTTGGTTCCTTGGGCCAACCTGGGCTACATGAGAGCCTGT  450

seq1  TGAAAAAGAAGAAAGGGGAAAGGAAAGGAGGAAGAGAGAGAAGGACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGAAGAAAGGGGAAAGGAAAGGAGGAAGAGAGAGAAGGACAGAG  500

seq1  AGATGGATGGATGGATGGATGGATGGATGGATG  533
      |||||||||||||||||||||||||||||||||
seq2  AGATGGATGGATGGATGGATGGATGGATGGATG  533

seq1: chr5_115119055_115120130
seq2: B6Ng01-314H13.g_64_1163 (reverse)

seq1  ATGTGTGTGTGTGTGAGAATTTATTTGCC-TTAC-AGGACAGTCCA-TCA  47
      |||||| ||||| |||||| ||||||||| |||| ||||||||||| |||
seq2  ATGTGTTTGTGT-TGAGAACTTATTTGCCTTTACAAGGACAGTCCATTCA  49

seq1  -TAG-AGTGCAGTCAAGGCAGC-AACCTG-AGGCAGA-GACCACAGAGGA  92
       ||| ||||||||||||||||| |||||| ||||||| |||||||||| |
seq2  TTAGAAGTGCAGTCAAGGCAGCAAACCTGAAGGCAGAGGACCACAGAGAA  99

seq1  ACAC-TAAC-TCCTAG-CTTCCTACAC-AGCCC-AGGTCC-TCCTGTC-A  135
      |||| |||| |||||| |||||||||| ||||| || ||| ||||||| |
seq2  ACACTTAACTTCCTAGCCTTCCTACACAAGCCCAAGATCCTTCCTGTCAA  149

seq1  GGGGATGGCAGCGCCCAGGGTGGGCGGGGCATCCTGCATCAATT-AGCAG  184
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGGGATGGCAGCGCCCAGGGTGGGCGGGGCATCCTGCATCAATTAAGCAG  199

seq1  -TCAAGAGCAGGCAGCACAGGTGTGCCCACAGGCCTGTCAGTCAGGAGG-  232
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAAGAGCAGGCAGCACAGGTGTGCCCACAGGCCTGTCAGTCAGGAGGA  249

seq1  AGGCAGTT-GGTTCATCAGTGCAGGTCCCCCCTTCCCAG-GAGTGCCGGG  280
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCAGTTGGGTTCATCAGTGCAGGTCCCCCCTTCCCAGAGAGTGCCGGG  299

seq1  TTAACTCTCACAG-CCCCCAGCTGG-AACCTTTGACACCGAAAATACTAA  328
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TTAACTCTCACAGCCCCCCAGCTGGAAACCTTTGACACCGAAAATACTAA  349

seq1  AAGAATC-AAGCGCCACAGACACATGCAGGTGTGATTTCAAAATATAGAT  377
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAAAGCGCCACAGACACATGCAGGTGTGATTTCAAAATATAGAT  399

seq1  TTATTTATTAAGGATTATTTAGTTTCTGCATAAAAATCACCAATTGTTCC  427
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTATTTATTAAGGATTATTTAGTTTCTGCATAAAAATCACCAATCGTTCC  449

seq1  TCATTGGGCTTTTTGGG--TTTTTTTTTTTTTTAAACATACATCAATTCT  475
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  TCATTGGGCTTTTTGGGTTTTTTTTTTTTTTTTAAACATACATCAATTCT  499

seq1  TTCAGGGCAGGTTTACCCCAATACTTTAAAAAATACAGCTCCAGAAGGAC  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCAGGTTTACCCCAATACTTTAAAAAATACAGCTCCAGAAGGAC  549

seq1  GGTTAAGGCAGCAAGGCAGTGTCTTGAGTCTCCGCAGCTGGAGGGCTCTT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGCAGCAAGGCAGTGTCTTGAGTCTCCGCAGCTGGAGGGCTCTT  599

seq1  ATGAGAGGCAGTTTCTTAGGTTGGAAGAGCCAACCCCCAAGAAAATAATT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGGCAGTTTCTTAGGTTGGAAGAGCCAACCCCCAAGAAAATAATT  649

seq1  ATGCAGAAGAATGCAAATACAGTCACATATGGGTCACCTGTGTGCGCCTA  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGAATGCAAATACAGTCACATATGGGTCACCTGTGTGCGCCTA  699

seq1  GTCAGTTGGTTGAAAAGGCTTGCTGGTACATTTCAGGGGAAAAAAAAACC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGGTTGAAAAGGCTTGCTGGTACATTTCAGGGGAAAAAAAAACC  749

seq1  CAAAAAACATTATCTGACAAAAGACAGAGGGGGGGTGAGAAGAGAGAGAG  775
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACATTATTTGACAAAAGACAGAGGGGGGGTGAGAAGAGAGAGAG  799

seq1  AGAGAGTGAGACAGAGAGGAGAGAGAGAGAGGAGAGAGAGAGAGAGAACG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTGAGACAGAGAGGAGAGAGAGAGAGGAGAGAGAGAGAGAGAACG  849

seq1  AGAACAGGGCTGGTTATGCCAGATGGATGTGTGAGCCCCGTGAGGGGGGC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGGCTGGTTATGCCAGATGGATGTGTGAGCCCCGTGAGGGGGGC  899

seq1  TCCTGCCAGCTTGCCTTTTAAACAGAGGCCACAGTAGGGCACCCGCTGAA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCAGCTTGCCTTTTAAACAGAGGCCACAGTAGGGCACCCGCTGAA  949

seq1  CTTCCAATCAAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGC  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATCAAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGC  999

seq1  CAGATGGGCCGGGCTTCTTTGCTGGGTGAGGTGTATGTCGCCCCTGAGCT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGCCGGGCTTCTTTGCTGGGTGAGGTGTATGTCGCCCCTGAGCT  1049

seq1  GAGTTCCTCCTGAGCTAGGTAGGGGAGGAAATGACAAAACCCTAGGAATT  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTCCTGAGCTAGGTAGGGGAGGAAATGACAAAACCCTAGGAATT  1099

seq1  C  1076
      |
seq2  C  1100