BAC Information

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BAC

Clone NameB6Ng01-314H16
Chromosome5 (Build37)
Map Location 49,257,270 - 49,384,237
singlet/doubletdoublet
Overlap geneKcnip4
Upstream geneLOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885, LOC666223, Gpr125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314H16.bB6Ng01-314H16.g
ACCGA105403GA105404
length1,0321,143
definitionB6Ng01-314H16.b B6Ng01-314H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,257,270 - 49,258,293)(49,383,095 - 49,384,237)
sequence
gaattcatgaaaatggttatggtagaaagaaagaagggaggctacagagc
acaagcactctctccccataggccacaccaggtcagaaagtaggaaaaga
aaaaaaaaaaaaacaaaaaaacaaaaaaagcaaaaaaaaaaaaaaaaaaa
aaaaaaacaactcaagaatagtaagcaagcacagattttctataaaagcc
tgcagtacaaacagcagtcaaaagcttcaaggattctgcctctgagtgca
gaacttggatttgatgaaagttgctcatatatttctgggtttttttcttc
atcacaaactctttattgtagagatggccttgaatttcacatccacatac
tttgtttatcgtttggcttctgtcgatttatttgtgggaaattcattatt
tttgtttggaattatattttatctggcagatatttttaaaatatccagta
aagtagctaatatttcatagggttttttgatttgtctgaggtaaggtttc
actatatagctatggttggtctgaaacatgcaatgctaaagtagttggca
aagaacttgtagcaattctcttatttctgtcctccagttgctaagatgat
aggcatggcaccagggtttctaacttacttggtaatttaaatacacagga
aatgcattgttatttccaatgtacttatggtatttcaagttaggattttt
ataaccttggttttatttatccattcattcatttattcttcttaaaaaaa
ttttaaacttattttattatatatatatattatactatatatatatatat
atatatatatatatatatgatgtgtaggagatggtctaaagtctttttag
agtatagagatagatctaaaagtttctagtctctgaaaagaatctttttc
tccacaatttcacacagttcaagtgttcaaaaactataacgaaaggactg
cgttctagagtaattgaatgacggatcaatgtggatccccgagcctcgag
agtgtatcagaggtaaaaagtcagtgggcatt
gaattcaactaattgaaaacaaaacttctaggtctttgaaggagaagaaa
aaagaaacaggtgagaaagagagagacagagacagatagacagagtggca
gagagacagagacatagtcagaaatacagagacagagaccgagaaatgta
ttaaactcttttgtcttggctttacttcttgtggtataccatgctcagaa
taaataactatacttgtggatacttgaaggaactttctaatagtacccag
atggtcttctaaaagctggtacacctcatttgacagtcatatgactactg
actgatcaaatttttcccaggaaggaataaatctttaagtaatcttttat
tgctaaaaatataattccattttatgtttatattggaatgacaatcccaa
ttcctaaattggtctgtttaaaaataacctctcctacattccttcaaatg
atttattgcttttgctacattattgcttcaggtgtaattggaatattttt
ttatgtcattgtgaagaagatatgagataagatatgctaatgggtctgcc
tttgtacataatgttttatgagccttttgtttgcttcaggatcttaatta
gtgacagtcacttaaaaccatccatctttgttcacatttatgcaaatact
gtaagttaataatgagagattcaaagaatttggttcatcatcctttattt
tgaatttgagagtctgcataagctaaaaattgattgactaattatcagag
atccttaaggatgattttgtttcacatcaaagtacaaatgatgtttgtga
acttcaaaaagttcttcatgtatgtcattgttgtttctacaatggtgcaa
ccttattcctaacttaggcacctactcagaaagatggaaagggccttgtt
aacatttcctctttatatacctcttgaattcattcactcattacaatttt
aagcagaatctttgtagtctactaatgggtaattgtagtaatactatcag
tgttgattaaaaagcatgtaagtgctataagaaatgatcttttattatgg
atcccgtatagctgggctcacacacgccagaacaaaattcaatctctaga
tttataggcattgtacagtcagtacgtttctaccctaatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49257270_49258293
seq2: B6Ng01-314H16.b_45_1076

seq1  GAATTCATGAAAATGGTTATGGTAGAAAGAAAGAAGGGAGGCTACAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAATGGTTATGGTAGAAAGAAAGAAGGGAGGCTACAGAGC  50

seq1  ACAAGCACTCTCTCCCCATAGGCCACACCAGGTCAGAAAGTAGGAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACTCTCTCCCCATAGGCCACACCAGGTCAGAAAGTAGGAAAAGA  100

seq1  AAAAAAAAAAAAACAAAAAAACAAAAAAAGCAAAAAAAAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACAAAAAAACAAAAAAAGCAAAAAAAAAAAAAAAAAAA  150

seq1  AAAAAAACAACTCAAGAATAGTAAGCAAGCACAGATTTTCTATAAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAACTCAAGAATAGTAAGCAAGCACAGATTTTCTATAAAAGCC  200

seq1  TGCAGTACAAACAGCAGTCGAAAGCTTCAAGGATTCTGCCTCTGAGTGCA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCAGTACAAACAGCAGTCAAAAGCTTCAAGGATTCTGCCTCTGAGTGCA  250

seq1  GAACTTGGATTTGATGAAAGTTGCTCATATATTTCTGGGTTTTTTTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGATTTGATGAAAGTTGCTCATATATTTCTGGGTTTTTTTCTTC  300

seq1  ATCACAAACTCTTTATTGTAGAGATGGCCTTGAATTTCACATCCACATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACTCTTTATTGTAGAGATGGCCTTGAATTTCACATCCACATAC  350

seq1  TTTGTTTATCGTTTGGCTTCTGTCGATTTATTTGTGGGAAATTCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTATCGTTTGGCTTCTGTCGATTTATTTGTGGGAAATTCATTATT  400

seq1  TTTGTTTGGAATTATATTTTATCTGGCAGATATTTTTAAAATATCCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGAATTATATTTTATCTGGCAGATATTTTTAAAATATCCAGTA  450

seq1  AAGTAGCTAATATTTCATAGGGTTTTTTGATTTGTCTGAGGTAAGGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTAATATTTCATAGGGTTTTTTGATTTGTCTGAGGTAAGGTTTC  500

seq1  ACTATATAGCTATGGTTGGTCTGAAACATGCAATGCTAAAGTAGTTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAGCTATGGTTGGTCTGAAACATGCAATGCTAAAGTAGTTGGCA  550

seq1  AAGAACTTGTAGCAATTCTCTTATTTCTGTCCTCCAGTTGCTAAGATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTGTAGCAATTCTCTTATTTCTGTCCTCCAGTTGCTAAGATGAT  600

seq1  AGGCATGGCACCAGGGTTTCTAACTTACTTGGTAATTTAAATACACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGCACCAGGGTTTCTAACTTACTTGGTAATTTAAATACACAGGA  650

seq1  AATGCATTGTTATTTCCAATGTACTTATGGTATTTCAAGTTAGGATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTGTTATTTCCAATGTACTTATGGTATTTCAAGTTAGGATTTTT  700

seq1  ATAACCTTGGTTTTATTTATCCATTCATTCATTTATTCTTCTTAAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTGGTTTTATTTATCCATTCATTCATTTATTCTTCTTAAAAAAA  750

seq1  TTTTAAACTTATTTTATTATATATATATATTATACTATATATATATATAT  800
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TTTTAAACTTATTTTATTATATATATATATTATAC--TATATATATATAT  798

seq1  ATATATATATATATATATATTATATTTAGGAAATAGTCTAAAGTCTTTTT  850
      |||||||||||||||||||| || | ||||| || |||||||||||||||
seq2  ATATATATATATATATATATGATGTGTAGGAGATGGTCTAAAGTCTTTTT  848

seq1  A-TGTATATAAATAG-TCTAAAAGTTTCTAAGCATCTGGAAAAGAATC-T  897
      |  ||||| | |||| ||||||||||||| ||  ||| |||||||||| |
seq2  AGAGTATAGAGATAGATCTAAAAGTTTCT-AGTCTCT-GAAAAGAATCTT  896

seq1  TTTCTCCAGAA-TTCACAGAGTTCAAGT-TTCAAAAAATAAAACGAAA-G  944
      |||||||| || |||||| ||||||||| |||||||| || ||||||| |
seq2  TTTCTCCACAATTTCACACAGTTCAAGTGTTCAAAAACTATAACGAAAGG  946

seq1  ACT-CCTTATAAAGTAATTGAATGACAG-TGAAAATTCAAGTCCCAGCCT  992
      ||| | || || |||||||||||||| | | ||  |  |   || |||||
seq2  ACTGCGTTCTAGAGTAATTGAATGACGGATCAATGTGGATCCCCGAGCCT  996

seq1  C-AGAGTGTATCAGAGGT-TAAAGT-AG-GGGCATT  1024
      | ||||||||||||||||  ||||| || |||||||
seq2  CGAGAGTGTATCAGAGGTAAAAAGTCAGTGGGCATT  1032

seq1: chr5_49383095_49384237
seq2: B6Ng01-314H16.g_64_1206 (reverse)

seq1  AAATATTAGGGTAGAAATGTACAAGGAATGTACAATG-CTATAAACTAAG  49
      ||||||||||||||||| ||||   || ||||||||| |||||||   ||
seq2  AAATATTAGGGTAGAAACGTAC--TGACTGTACAATGCCTATAAATCTAG  48

seq1  AGA-TGATTTTTG-TCTTGCCTGTGTGAG-CCAGCTATTAAGGGGAT-CA  95
      ||| ||| ||||| ||| || |||||||| ||||||||  | ||||| ||
seq2  AGATTGAATTTTGTTCTGGCGTGTGTGAGCCCAGCTAT--ACGGGATCCA  96

seq1  TAATTAAAAGATCATTTCTTATAGCACCTACATGCTTTTTAAATCAACAC  145
      ||| ||||||||||||||||||||||| |||||||||||| |||||||||
seq2  TAA-TAAAAGATCATTTCTTATAGCACTTACATGCTTTTT-AATCAACAC  144

seq1  TGATAGTATTAACTACAATTA-CCATTAGTAGACTACAAAGATTCTGCTT  194
      |||||||||| |||||||||| ||||||||||||||||||||||||||||
seq2  TGATAGTATT-ACTACAATTACCCATTAGTAGACTACAAAGATTCTGCTT  193

seq1  AAAATTGTAATGAGTGAATGAATTCAAGAGGTATATAAAGAGGAAATGTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAATGAGTGAATGAATTCAAGAGGTATATAAAGAGGAAATGTT  243

seq1  AACAAGG-CCTTTCCATCTTTCTGAGTAGGTGCCTAAGTTAGGAATAAGG  293
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCCCTTTCCATCTTTCTGAGTAGGTGCCTAAGTTAGGAATAAGG  293

seq1  TTGCACCATTGTAGAAACAACAATGACATACATGAAGAACTTTTTGAAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCATTGTAGAAACAACAATGACATACATGAAGAACTTTTTGAAGT  343

seq1  TCACAAACATCATTTGTACTTTGATGTGAAACAAAATCATCCTTAAGGAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACATCATTTGTACTTTGATGTGAAACAAAATCATCCTTAAGGAT  393

seq1  CTCTGATAATTAGTCAATCAATTTTTAGCTTATGCAGACTCTCAAATTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAATTAGTCAATCAATTTTTAGCTTATGCAGACTCTCAAATTCA  443

seq1  AAATAAAGGATGATGAACCAAATTCTTTGAATCTCTCATTATTAACTTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGATGATGAACCAAATTCTTTGAATCTCTCATTATTAACTTAC  493

seq1  AGTATTTGCATAAATGTGAACAAAGATGGATGGTTTTAAGTGACTGTCAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGCATAAATGTGAACAAAGATGGATGGTTTTAAGTGACTGTCAC  543

seq1  TAATTAAGATCCTGAAGCAAACAAAAGGCTCATAAAACATTATGTACAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGATCCTGAAGCAAACAAAAGGCTCATAAAACATTATGTACAAA  593

seq1  GGCAGACCCATTAGCATATCTTATCTCATATCTTCTTCACAATGACATAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACCCATTAGCATATCTTATCTCATATCTTCTTCACAATGACATAA  643

seq1  AAAAATATTCCAATTACACCTGAAGCAATAATGTAGCAAAAGCAATAAAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTCCAATTACACCTGAAGCAATAATGTAGCAAAAGCAATAAAT  693

seq1  CATTTGAAGGAATGTAGGAGAGGTTATTTTTAAACAGACCAATTTAGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGGAATGTAGGAGAGGTTATTTTTAAACAGACCAATTTAGGAA  743

seq1  TTGGGATTGTCATTCCAATATAAACATAAAATGGAATTATATTTTTAGCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTGTCATTCCAATATAAACATAAAATGGAATTATATTTTTAGCA  793

seq1  ATAAAAGATTACTTAAAGATTTATTCCTTCCTGGGAAAAATTTGATCAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGATTACTTAAAGATTTATTCCTTCCTGGGAAAAATTTGATCAGT  843

seq1  CAGTAGTCATATGACTGTCAAATGAGGTGTACCAGCTTTTAGAAGACCAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTCATATGACTGTCAAATGAGGTGTACCAGCTTTTAGAAGACCAT  893

seq1  CTGGGTACTATTAGAAAGTTCCTTCAAGTATCCACAAGTATAGTTATTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACTATTAGAAAGTTCCTTCAAGTATCCACAAGTATAGTTATTTA  943

seq1  TTCTGAGCATGGTATACCACAAGAAGTAAAGCCAAGACAAAAGAGTTTAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCATGGTATACCACAAGAAGTAAAGCCAAGACAAAAGAGTTTAA  993

seq1  TACATTTCTCGGTCTCTGTCTCTGTATTTCTGACTATGTCTCTGTCTCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCTCGGTCTCTGTCTCTGTATTTCTGACTATGTCTCTGTCTCTC  1043

seq1  TGCCACTCTGTCTATCTGTCTCTGTCTCTCTCTTTCTCACCTGTTTCTTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCTGTCTATCTGTCTCTGTCTCTCTCTTTCTCACCTGTTTCTTT  1093

seq1  TTTCTTCTCCTTCAAAGACCTAGAAGTTTTGTTTTCAATTAGTTGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCCTTCAAAGACCTAGAAGTTTTGTTTTCAATTAGTTGAATTC  1143