BAC Information

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BAC

Clone NameB6Ng01-315C24
Chromosome5 (Build37)
Map Location 42,821,630 - 42,842,088
singlet/doubletdoublet
Overlap genenone
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315C24.bB6Ng01-315C24.g
ACCGA105901GA105902
length1,1451,163
definitionB6Ng01-315C24.b B6Ng01-315C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,821,630 - 42,822,768)(42,840,911 - 42,842,088)
sequence
gaattcacttgagtaagatttaaatccaactagacaaaatttctttactc
caatttaaaagtcactcttgctcctttagggatatcttgctgagctggtc
attgttagtttttttataatttcttactgggtaggactattgattacttt
tctcccttggcagcttacatagcatctttgaatagtataagagttaggtc
tcagggaggaaactttcaggtgagttctagctcaatttccccaagtcctg
tgtccaaactatgtggcatcttcagcaacagggtcttaccttcatgttct
gggaagcaaccaagggcagtgggaataacttatactgtttgggactatct
agatctcccctgactagtaattcaagggaaagtctccattatttggtcct
gaggtatttgtttgatagtctatggcgattaggagagatttatccctcat
cctggcataattatgtttccagtatctagattcaatctctttaggtaatc
ttataaaatgtttctcaatttttcaaatgttgttggtgttatttttttcc
tccttctcctactccctctccattgatctattatttctcaagccaatgaa
cctcttgcttttcctatttcctgcttcatagcacccatgttctattatca
ccctctctggcacttctactctaccatggtccatctttactttcctggtt
acttctgattctctacatgttatgtatttacatccaaggttttgaagcta
ggatctacacataagaaaaaaaggtgcaggatttgtctttctaagccttt
gttacctctgggaattaagtatctgaacatgttctttttctcatcattct
gtgatgctgaacacagatctgtttcctggttgaccaatagcagaacaact
ttgtctacttcaagcaaagttgtattacttaagcattacttagactcaag
tgtatgtgcagcactcctgggttgtgataaaatgcagttgttgttttatt
gttccttgagtagaaatttgagaatggtgatttcaacccaaggtgaagtg
gggctccttcccttcattgagcttaccttgagaggccaagaatccaaaaa
tgttgaaacatgcaactttcaatatgaatggcttgtcagtactct
gaattccacagcatcatgcacttgcagaaactatctacagctggaaaaaa
atcatgccctgacctgggcatgaggcaaatcataatctgtccctgtggac
catctgaagcagcctggtaacccacagccgggattaaagcaaaaacatat
tcttataacattttgtgtttaaagagaccaagattctcactacatagtct
atcaatgtttcatgtattcagttgaaatggactgatttaaaagccaagga
tatatttaacccattatctataacggcaacagccaatcaaatggaacaat
gcaatgtttaagaattaattcttgaagcattaaagcaacgaagaaacgtg
gttaaaagtgactacagaacacagaacacaggaactattgctgcaaggaa
atctgctccattagttgggactcaggagtccaagtatcgtgctcctctaa
tgacagcactgagcaacctggtgttatcattccaattttttgaaacctga
gcaaacggaagaacaagaaaaattgagtgaagtgctgaaggtcacatgga
cgccaagcccagaatagaactaatgtctcttggtttcccgttcagctgcg
accttttccaatacaccttatttaaagcagtctggttggcagtagctaat
ggctttggtattcttgaatcattaatacttctttctgagtaatactcttg
gcagaattgcttgttttccagagcgagaaatattttttttgcaaatagtg
tccataagcagtattgattctcaatcacaaaacaaacagcaactacaaaa
cagcctaactaaaataattgaataaatttaaacttaaagtgtgtttagat
tataatcaaatagcatcaaagcatatcatagcaatatcatgaattctgga
agataggaaagttgcatgaaacaaactgaatatcaaataatagttttaca
aaacttggaaacaggagtcagactgttagctaggagcttgattttctgca
aaatgcaatacacttgcaccttgcccttgacctcacaatcctggccctgc
tacagctcatgctacagcactcattcctcagccatcgaatgctttctaat
tagctggcatctgcttgattcacttgcagccactagaatacaccttcacg
aattattttccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42821630_42822768
seq2: B6Ng01-315C24.b_42_1186

seq1  GAATTCACTTGAGTAAGATTTAAATCCAACTAGACAAAATTTCTTTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAGTAAGATTTAAATCCAACTAGACAAAATTTCTTTACTC  50

seq1  CAATTTAAAAGTCACTCTTGCTCCTTTAGGGATATCTTGCTGAGCTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAAAGTCACTCTTGCTCCTTTAGGGATATCTTGCTGAGCTGGTC  100

seq1  ATTGTTAGTTTTTTTATAATTTCTTACTGGGTAGGACTATTGATTACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAGTTTTTTTATAATTTCTTACTGGGTAGGACTATTGATTACTTT  150

seq1  TCTCCCTTGGCAGCTTACATAGCATCTTTGAATAGTATAAGAGTTAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTGGCAGCTTACATAGCATCTTTGAATAGTATAAGAGTTAGGTC  200

seq1  TCAGGGAGGAAACTTTCAGGTGAGTTCTAGCTCAATTTCCCCAAGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGAAACTTTCAGGTGAGTTCTAGCTCAATTTCCCCAAGTCCTG  250

seq1  TGTCCAAACTATGTGGCATCTTCAGCAACAGGGTCTTACCTTCATGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAACTATGTGGCATCTTCAGCAACAGGGTCTTACCTTCATGTTCT  300

seq1  GGGAAGCAACCAAGGGCAGTGGGAATAACTTATACTGTTTGGGACTATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAACCAAGGGCAGTGGGAATAACTTATACTGTTTGGGACTATCT  350

seq1  AGATCTCCCCTGACTAGTAATTCAAGGGAAAGTCTCCATTATTTGGTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCCCCTGACTAGTAATTCAAGGGAAAGTCTCCATTATTTGGTCCT  400

seq1  GAGGTATTTGTTTGATAGTCTATGGCGATTAGGAGAGATTTATCCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTGTTTGATAGTCTATGGCGATTAGGAGAGATTTATCCCTCAT  450

seq1  CCTGGCATAATTATGTTTCCAGTATCTAGATTCAATCTCTTTAGGTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATAATTATGTTTCCAGTATCTAGATTCAATCTCTTTAGGTAATC  500

seq1  TTATAAAATGTTTCTCAATTTTTCAAATGTTGTTGGTGTTATTTTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATGTTTCTCAATTTTTCAAATGTTGTTGGTGTTATTTTTTTCC  550

seq1  TCCTTCTCCTACTCCCTCTCCATTGATCTATTATTTCTCAAGCCAATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTACTCCCTCTCCATTGATCTATTATTTCTCAAGCCAATGAA  600

seq1  CCTCTTGCTTTTCCTATTTCCTGCTTCATAGCACCCATGTTCTATTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTTTTCCTATTTCCTGCTTCATAGCACCCATGTTCTATTATCA  650

seq1  CCCTCTCTGGCACTTCTACTCTACCATGGTCCATCTTTACTTTCCTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTGGCACTTCTACTCTACCATGGTCCATCTTTACTTTCCTGGTT  700

seq1  ACTTCTGATTCTCTACATGTTATGTATTTACATCCAAGGTTTTGAAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATTCTCTACATGTTATGTATTTACATCCAAGGTTTTGAAGCTA  750

seq1  GGATCTACACATAAGAAAAAAAGGTGCAGGATTTGTCTTTCTAAGCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTACACATAAGAAAAAAAGGTGCAGGATTTGTCTTTCTAAGCCTTT  800

seq1  GTTACCTCTGGGAATTAAGTATCTGAACATGTTCTTTTTCTCATCATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTCTGGGAATTAAGTATCTGAACATGTTCTTTTTCTCATCATTCT  850

seq1  GTGATGCTGAACACAGATCTG-TTCCTGGTTGACCAATAGCAGAACAACT  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGATGCTGAACACAGATCTGTTTCCTGGTTGACCAATAGCAGAACAACT  900

seq1  TTGTCTACTTCAAGCAAAGTTGTATTACTT-AGCATTACTTAGACTCAAG  948
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTCTACTTCAAGCAAAGTTGTATTACTTAAGCATTACTTAGACTCAAG  950

seq1  TGTATGTGCAGCACTCCT-GGTTGTGATAAAATGCAGTTGTTGTTTTATT  997
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTATGTGCAGCACTCCTGGGTTGTGATAAAATGCAGTTGTTGTTTTATT  1000

seq1  G-TCCTTGAGTAGAAA-TTGAG-ATGGTGGATTTCAACCCCAAGTGAAGT  1044
      | |||||||||||||| ||||| ||||| ||||||||||| | |||||||
seq2  GTTCCTTGAGTAGAAATTTGAGAATGGT-GATTTCAACCCAAGGTGAAGT  1049

seq1  -GGGCT-CTCCCCTTCATTGAGCTTACCCTTGAGAGG-CAAG-ATCCAAA  1090
       ||||| || |||||||||||||||| |||||||||| |||| ||||  |
seq2  GGGGCTCCTTCCCTTCATTGAGCTTA-CCTTGAGAGGCCAAGAATCC--A  1096

seq1  AAAATGTTG-ACCATGAAACCTTCCAATATGAAATGCTTGTCAGTACTCT  1139
      ||||||||| | |||| || ||| |||||||||  |||||||||||||||
seq2  AAAATGTTGAAACATGCAA-CTTTCAATATGAATGGCTTGTCAGTACTCT  1145

seq1: chr5_42840911_42842088
seq2: B6Ng01-315C24.g_63_1225 (reverse)

seq1  TCAGAAAATAAATAGTGAAAGTGTATCTTAGTGGTTTGCAAGTGATTCAG  50
      || |||||||| | ||||| ||||||  ||||||  ||||||||| ||| 
seq2  TCGGAAAATAATTCGTGAAGGTGTATTCTAGTGG-CTGCAAGTGAATCA-  48

seq1  GGCAGGATGCACAGCT-ATTAGAAAGCCATCGATTGGGCTGGAGGAAATG  99
       ||| ||||| ||||| ||||||||||  |||||  |||| |||| ||||
seq2  AGCA-GATGC-CAGCTAATTAGAAAGCATTCGAT--GGCT-GAGG-AATG  92

seq1  AGTTGGCTGTAGCATGAGCTGTAAGCCAGGGCCCAGGATTGTGAGGTC-A  148
      |||  ||||||||||||||||||   ||||| |||||||||||||||| |
seq2  AGT--GCTGTAGCATGAGCTGTA--GCAGGG-CCAGGATTGTGAGGTCAA  137

seq1  GGGCAAGGTGCCAAGGTGTATTGCATTTTTTGGCAGAAATTCAAGCTCCT  198
      |||||||||||  | ||||||||||||||   ||||||| ||||||||||
seq2  GGGCAAGGTGC--AAGTGTATTGCATTTT---GCAGAAAATCAAGCTCCT  182

seq1  AGCTAACAGTCTGACTCCTGTTTCCAAGTTTTGTAAAACTATTATTTGAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAGTCTGACTCCTGTTTCCAAGTTTTGTAAAACTATTATTTGAT  232

seq1  ATTCAGTTTGTTTCATGCAACTTTCCTATCTTCCAGAATTCATGATATTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTGTTTCATGCAACTTTCCTATCTTCCAGAATTCATGATATTG  282

seq1  CTATGATATGCTTTGATGCTATTTGATTATAATCTAAACACACTTTAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATGCTTTGATGCTATTTGATTATAATCTAAACACACTTTAAGT  332

seq1  TTAAATTTATTCAATTATTTTAGTTAGGCTGTTTTGTAGTTGCTGTTTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTATTCAATTATTTTAGTTAGGCTGTTTTGTAGTTGCTGTTTGT  382

seq1  TTTGTGATTGAGAATCAATACTGCTTATGGACACTATTTGC-AAAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGTGATTGAGAATCAATACTGCTTATGGACACTATTTGCAAAAAAAAT  432

seq1  ATTTCTCGCTCTGGAAAACAAGCAATTCTGCCAAGAGTATTACTCAGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCGCTCTGGAAAACAAGCAATTCTGCCAAGAGTATTACTCAGAAA  482

seq1  GAAGTATTAATGATTCAAGAATACCAAAGCCATTAGCTACTGCCAACCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTAATGATTCAAGAATACCAAAGCCATTAGCTACTGCCAACCAG  532

seq1  ACTGCTTTAAATAAGGTGTATTGGAAAAGGTCGCAGCTGAACGGGAAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTAAATAAGGTGTATTGGAAAAGGTCGCAGCTGAACGGGAAACC  582

seq1  AAGAGACATTAGTTCTATTCTGGGCTTGGCGTCCATGTGACCTTCAGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATTAGTTCTATTCTGGGCTTGGCGTCCATGTGACCTTCAGCAC  632

seq1  TTCACTCAATTTTTCTTGTTCTTCCGTTTGCTCAGGTTTCAAAAAATTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCAATTTTTCTTGTTCTTCCGTTTGCTCAGGTTTCAAAAAATTGG  682

seq1  AATGATAACACCAGGTTGCTCAGTGCTGTCATTAGAGGAGCACGATACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACACCAGGTTGCTCAGTGCTGTCATTAGAGGAGCACGATACTT  732

seq1  GGACTCCTGAGTCCCAACTAATGGAGCAGATTTCCTTGCAGCAATAGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTGAGTCCCAACTAATGGAGCAGATTTCCTTGCAGCAATAGTTC  782

seq1  CTGTGTTCTGTGTTCTGTAGTCACTTTTAACCACGTTTCTTCGTTGCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTGTGTTCTGTAGTCACTTTTAACCACGTTTCTTCGTTGCTTT  832

seq1  AATGCTTCAAGAATTAATTCTTAAACATTGCATTGTTCCATTTGATTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCAAGAATTAATTCTTAAACATTGCATTGTTCCATTTGATTGGC  882

seq1  TGTTGCCGTTATAGATAATGGGTTAAATATATCCTTGGCTTTTAAATCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCGTTATAGATAATGGGTTAAATATATCCTTGGCTTTTAAATCAG  932

seq1  TCCATTTCAACTGAATACATGAAACATTGATAGACTATGTAGTGAGAATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCAACTGAATACATGAAACATTGATAGACTATGTAGTGAGAATC  982

seq1  TTGGTCTCTTTAAACACAAAATGTTATAAGAATATGTTTTTGCTTTAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCTTTAAACACAAAATGTTATAAGAATATGTTTTTGCTTTAATC  1032

seq1  CCGGCTGTGGGTTACCAGGCTGCTTCAGATGGTCCACAGGGACAGATTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGTGGGTTACCAGGCTGCTTCAGATGGTCCACAGGGACAGATTAT  1082

seq1  GATTTGCCTCATGCCCAGGTCAGGGCATGATTTTTTTCCAGCTGTAGATA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCCTCATGCCCAGGTCAGGGCATGATTTTTTTCCAGCTGTAGATA  1132

seq1  GTTTCTGCAAGTGCATGATGCTGTGGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  GTTTCTGCAAGTGCATGATGCTGTGGAATTC  1163