BAC Information

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BAC

Clone NameB6Ng01-315I02
Chromosome5 (Build37)
Map Location 66,724,074 - 66,871,942
singlet/doubletdoublet
Overlap geneApbb2
Upstream geneRfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809, Rhoh, LOC626641, EG666827, Chrna9, 9130230L23Rik, BC013481, LOC626714, LOC666854, LOC100042394, Nsun7
Downstream geneUchl1, LOC100041876, 3732412D22Rik, LOC624662, Phox2b, Tmem33, Slc30a9, EG666938, C330024D21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315I02.bB6Ng01-315I02.g
ACCGA106140GA106141
length9971,087
definitionB6Ng01-315I02.b B6Ng01-315I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,724,074 - 66,725,063)(66,870,845 - 66,871,942)
sequence
gaattcctacatgcccaccctaaatgaaagcagcaatgtggatatttaat
tcagccatttttttttttttttgttaatgtcactagcaggctgtgacact
taagagtctttcaaagggaagggatgaaggcaagaacatacctgaccccc
gaaaatggcatgtgcaggttgtctggcaaatagatgcgtgccctgacatg
acagaatcaggccaccccggccccagttgacaaccatacttttggcagct
gctttctgctttccttctgtcataattatttcaactgtcataatttattc
atctgcccgacaagcttacaagttgtagggtaaccagtccaggcttctag
atcaaaaagcctggcagtgtactccccccatccccgcccttccacccccc
aatcctgggccttcccagctgctagaatactgactgcagacagaatattt
tgtatccacatagttttgcaaaactaaaatgattttcaaaacccatgtct
cctgtcacagttgccctcaactttttgggttcataattctgcagtgagaa
gcagattaacggaaggattcctccagaaactaagcacaaaaggtcctcac
ttgaaaaaaaaaaaaaaagccgggtggtggtggcgcacacctttaatccc
agcgcttgggaggcagaggcaggcggatttctgagttcaaggccagcctg
gtctacagagtgagttccaggacagtcaggactatccagagagaccctgt
ctctggaaaaaaaaaaaaaaagtcctcacttagagtgactcaacttgacc
tttttttttttttttaacagctttctgaaggaaggaaagggaagacacat
ccagtcaaaactatactttgaattttgatctttttctcaagctaagcaat
atttgggtaacattggtctcttgtggtgttgggcagtggagctatggctc
aagtcagtcatgtgatcaagattgaaaaaaaacaaaaacaccaacaa
gaattcagggcttgggatggggcaaggtggccagagaggaatgtgcatag
tgggtgggtgggtgaactcagaaaaggtacctgaggaatgggactcgagg
gcctcgctgaggagtgttggatgtttcccaagagcagtgagaaggcactg
aaggtgagtgaggcatgccgcttgatgcgatgggagatgaaggatgctaa
ttgcatgtgaaaggggaaggacaggatgagaactgagcattactgggaca
gcacttttcagaggagaactgaacatcactgggacagcacctttcagagg
agaactgagtatcattgggacagcacctttcagaggagaactgagcatca
ctgagacaacacctttcagaggagaactgagcatcactgggacagcacct
ttcagaggggaactgaacattactgggaaagcacctttcaaaggagaact
gagtatcactgggacagcacctttcagaggagaactgagcatcactggga
caacatctttcagaggagaactgggcatcattgagacagcacctttcagt
ggagaactgagcatcactggtcgtcttctctgctgcctaacatcttaagt
atcagcactgcagctcacatgccctcactatgagaagtgaggagcctggc
cccaagcaaagcctcctagtacttaggttgtttctgggttcacagaagca
aaacttcatgctcttggtagccatttggctgccagtttatgcctgtgtat
gcagaggaaaaccagactgtgggagctcaaagatttaaccactccccttc
ctctttctattattattgttgttgttactggcattgatactcataatgta
ttgtttctgtgtagtagcggctctgatacaatacctggaaatactgatta
ctctcttttgttggaggcttctctttttcccagatggagacttaaaacat
gtacacattacttgctcaactcagtgcccataacccatatgttgtcacaa
aactcggctgattgagactggcacagttatgagctggcagtagaaatagt
ctagcaacataataaccccagcctggttccagattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_66724074_66725063
seq2: B6Ng01-315I02.b_47_1043

seq1  GAATTCCTACATGCCCACCCTAAATGAAAGCAGCAATGTGGATATTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACATGCCCACCCTAAATGAAAGCAGCAATGTGGATATTTAAT  50

seq1  TCAGCCATTTTTTTTTTTTTTTGTTAATGTCACTAGCAGGCTGTGACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCATTTTTTTTTTTTTTTGTTAATGTCACTAGCAGGCTGTGACACT  100

seq1  TAAGAGTCTTTCAAAGGGAAGGGATGAAGGCAAGAACATACCTGACCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCTTTCAAAGGGAAGGGATGAAGGCAAGAACATACCTGACCCCC  150

seq1  GAAAATGGCATGTGCAGGTTGTCTGGCAAATAGATGCGTGCCCTGACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGCATGTGCAGGTTGTCTGGCAAATAGATGCGTGCCCTGACATG  200

seq1  ACAGAATCAGGCCACCCCGGCCCCAGTTGACAACCATACTTTTGGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCAGGCCACCCCGGCCCCAGTTGACAACCATACTTTTGGCAGCT  250

seq1  GCTTTCTGCTTTCCTTCTGTCATAATTATTTCAACTGTCATAATTTATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGCTTTCCTTCTGTCATAATTATTTCAACTGTCATAATTTATTC  300

seq1  ATCTGCCCGACAAGCTTACAAGTTGTAGGGTAACCAGTCCAGGCTTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCCGACAAGCTTACAAGTTGTAGGGTAACCAGTCCAGGCTTCTAG  350

seq1  ATCAAAAAGCCTGGCAGTGTACTCCCCCCATCCCCGCCCTTCCACCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAGCCTGGCAGTGTACTCCCCCCATCCCCGCCCTTCCACCCCCC  400

seq1  AATCCTGGGCCTTCCCAGCTGCTAGAATACTGACTGCAGACAGAATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGGGCCTTCCCAGCTGCTAGAATACTGACTGCAGACAGAATATTT  450

seq1  TGTATCCACATAGTTTTGCAAAACTAAAATGATTTTCAAAACCCATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCACATAGTTTTGCAAAACTAAAATGATTTTCAAAACCCATGTCT  500

seq1  CCTGTCACAGTTGCCCTCAACTTTTTGGGTTCATAATTCTGCAGTGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACAGTTGCCCTCAACTTTTTGGGTTCATAATTCTGCAGTGAGAA  550

seq1  GCAGATTAACGGAAGGATTCCTCCAGAAACTAAGCACAAAAGGTCCTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTAACGGAAGGATTCCTCCAGAAACTAAGCACAAAAGGTCCTCAC  600

seq1  TTGAAAAAAAAAAAAAAAGCCGGGTGGTGGTGGCGCACACCTTTAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAAAAAAAAAAAGCCGGGTGGTGGTGGCGCACACCTTTAATCCC  650

seq1  AGCGCTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTG  700

seq1  GTCTACAGAGTGAGTTCCAGGACAGTCAGGACTATCCAGAGAGACCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGTGAGTTCCAGGACAGTCAGGACTATCCAGAGAGACCCTGT  750

seq1  CTCTGG-AAAAAAAAAAAAAAGTCCTCACTTAGAGTGACTCAACTTGACC  799
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAAAAAAAAAAAAAGTCCTCACTTAGAGTGACTCAACTTGACC  800

seq1  TTTTTTTTTTTTTTTTAACAGCTTTCTGAAGGAAGGAAAGGG-AGACACA  848
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -TTTTTTTTTTTTTTTAACAGCTTTCTGAAGGAAGGAAAGGGAAGACACA  849

seq1  TCCAGTCAAAACTATACTTTGAATTTTGATC-TTTTCTCAGGCT-AGCAA  896
      ||||||||||||||||||||||||||||||| |||||||| ||| |||||
seq2  TCCAGTCAAAACTATACTTTGAATTTTGATCTTTTTCTCAAGCTAAGCAA  899

seq1  TATTTGG--TACAATGGTCTCTTGTGGTGTTGGGCAGT-GAGCTATGGCT  943
      |||||||   ||| |||||||||||||||||||||||| |||||||||||
seq2  TATTTGGGTAACATTGGTCTCTTGTGGTGTTGGGCAGTGGAGCTATGGCT  949

seq1  CAAGTCAGTCATGTGATCAAGATTG-AAAAAAACAAAAACAACAACAA  990
      ||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  CAAGTCAGTCATGTGATCAAGATTGAAAAAAAACAAAAACACCAACAA  997

seq1: chr5_66870845_66871942
seq2: B6Ng01-315I02.g_65_1151 (reverse)

seq1  GGAATTCTGGGAAACCAGGCCTTGGGGTTATTATGTTGCTAAGACTA--T  48
      |||| |||||  ||||||||  |||||||||||||||||| ||||||  |
seq2  GGAA-TCTGG--AACCAGGC--TGGGGTTATTATGTTGCT-AGACTATTT  44

seq1  CTACTGCCAGGCTCATAACTGTGCCAGTCTCAATTCAGCCGAGTTTTTGT  98
      ||||||||| ||||||||||||||||||||||| ||||||||| ||||||
seq2  CTACTGCCA-GCTCATAACTGTGCCAGTCTCAA-TCAGCCGAG-TTTTGT  91

seq1  TGGACAACATAATGGGTTATGGGCACTGAG-TGAGCAAGTTAATGTGTAC  147
        |||||||| ||||||||||||||||||| |||||||| ||||||||||
seq2  --GACAACAT-ATGGGTTATGGGCACTGAGTTGAGCAAG-TAATGTGTAC  137

seq1  ATGTTTTAAGTCTCCATTCTGGGAAAAAGAGAAGCCTCCAAC-AAAGAGA  196
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  ATGTTTTAAGTCTCCA-TCTGGGAAAAAGAGAAGCCTCCAACAAAAGAGA  186

seq1  GTAATCAGTATTTCCAGGTATTGTATCAGAGCCGCTACTACACAGAAAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAATCAGTATTTCCAGGTATTGTATCAGAGCCGCTACTACACAG-AAAC  235

seq1  AATACATTATGAGTATCAATGCCAGTAACAACAACAATAATAATAGAAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTATGAGTATCAATGCCAGTAACAACAACAATAATAATAGAAAG  285

seq1  AGGAAGGGGAGTGGTTAAATCTTTGAGCTCCCACAGTCTGGTTTTCCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGGAGTGGTTAAATCTTTGAGCTCCCACAGTCTGGTTTTCCTCT  335

seq1  GCATACACAGGCATAAACTGGCAGCCAAATGGCTACCAAGAGCATGAAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACACAGGCATAAACTGGCAGCCAAATGGCTACCAAGAGCATGAAGT  385

seq1  TTTGCTTCTGTGAACCCAGAAACAACCTAAGTACTAGGAGGCTTTGCTTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTGTGAACCCAGAAACAACCTAAGTACTAGGAGGCTTTGCTTG  435

seq1  GGGCCAGGCTCCTCACTTCTCATAGTGAGGGCATGTGAGCTGCAGTGCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGGCTCCTCACTTCTCATAGTGAGGGCATGTGAGCTGCAGTGCTG  485

seq1  ATACTTAAGATGTTAGGCAGCAGAGAAGACGACCAGTGATGCTCAGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGATGTTAGGCAGCAGAGAAGACGACCAGTGATGCTCAGTTCT  535

seq1  CCACTGAAAGGTGCTGTCTCAATGATGCCCAGTTCTCCTCTGAAAGATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAAAGGTGCTGTCTCAATGATGCCCAGTTCTCCTCTGAAAGATGT  585

seq1  TGTCCCAGTGATGCTCAGTTCTCCTCTGAAAGGTGCTGTCCCAGTGATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGTGATGCTCAGTTCTCCTCTGAAAGGTGCTGTCCCAGTGATAC  635

seq1  TCAGTTCTCCTTTGAAAGGTGCTTTCCCAGTAATGTTCAGTTCCCCTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTCCTTTGAAAGGTGCTTTCCCAGTAATGTTCAGTTCCCCTCTG  685

seq1  AAAGGTGCTGTCCCAGTGATGCTCAGTTCTCCTCTGAAAGGTGTTGTCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCTGTCCCAGTGATGCTCAGTTCTCCTCTGAAAGGTGTTGTCTC  735

seq1  AGTGATGCTCAGTTCTCCTCTGAAAGGTGCTGTCCCAATGATACTCAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCTCAGTTCTCCTCTGAAAGGTGCTGTCCCAATGATACTCAGTT  785

seq1  CTCCTCTGAAAGGTGCTGTCCCAGTGATGTTCAGTTCTCCTCTGAAAAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGAAAGGTGCTGTCCCAGTGATGTTCAGTTCTCCTCTGAAAAGT  835

seq1  GCTGTCCCAGTAATGCTCAGTTCTCATCCTGTCCTTCCCCTTTCACATGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAGTAATGCTCAGTTCTCATCCTGTCCTTCCCCTTTCACATGC  885

seq1  AATTAGCATCCTTCATCTCCCATCGCATCAAGCGGCATGCCTCACTCACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCATCCTTCATCTCCCATCGCATCAAGCGGCATGCCTCACTCACC  935

seq1  TTCAGTGCCTTCTCACTGCTCTTGGGAAACATCCAACACTCCTCAGCGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTTCTCACTGCTCTTGGGAAACATCCAACACTCCTCAGCGAG  985

seq1  GCCCTCGAGTCCCATTCCTCAGGTACCTTTTCTGAGTTCACCCACCCACC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGAGTCCCATTCCTCAGGTACCTTTTCTGAGTTCACCCACCCACC  1035

seq1  CACTATGCACATTCCTCTCTGGCCACCTTGCCCCATCCCAAGCCCTGAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCACATTCCTCTCTGGCCACCTTGCCCCATCCCAAGCCCTGAAT  1085

seq1  TC  1098
      ||
seq2  TC  1087