BAC Information

Click to search

BAC

Clone NameB6Ng01-315I05
Chromosome5 (Build37)12 (Build37)
Map Location 126,546,336 - 126,547,05653,264,596 - 53,265,121
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNcor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
Downstream geneLOC100040327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315I05.bB6Ng01-315I05.g
ACCGA106144GA106145
length8951,149
definitionB6Ng01-315I05.b B6Ng01-315I05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,546,336 - 126,547,056)(53,264,596 - 53,265,121)
sequence
gaattcctaacaaacccaaaattaaagttcaacacatatattcgtggctt
agtagaaaaatgctatatctagtcaaggcagggatcaaaagaaatccatt
cacctgtaccatgctttgataactaaatctctgagttttaattgaatagc
cgatatctactcagaaaccaaatatctcagtgattgggggagaggggtcc
ctgggtagggggaggggctgggcaaaacctacttgattaatgatttcttt
aatgctttgacctcccttctagccactgaccagaggtagggaagaaaggt
taataggaaaaaggggttgtggacctgtttagaagtagttcctttggcaa
ttccagttgctattgtcgggatatcagcagtccagtccagtagcacatgc
caaacatgaatgaatagtggctccacaatccaacagaaacagcaaggctc
ccctgaatcggcacaagtcagtggaggtagccagaatcagtcagactagc
acaagaagtcctttggtatgtttctctccacaaagtgaagactagctaag
accagggaagaccagtgaaacattgaacagcatagcagtgcaagagcttc
cagctcactgtctgttgggttctatttatcttctttctaaacatcacgtg
ccctcttacaagtctcttttcagcaaaacatcacatgccctctcacaaga
cagcttctagcaaaacattatacgacatagtggtttttaaatctggtttt
aaaagaaacttcagcttcaagaagatggcatcaaccccctggtgtcatgt
gaatgctgggaactgaacctggggttctctgcatgagtggttaagtggtc
ttaacttctgagccatctgtgatgatttatatatgcttgggccca

gaattcaaggtaatcatgtgactcatctattaatactgaaggagctctgc
aaaccacccagtagagactcctacacacctactgctccctcaaaccaagt
attaccatagtggtcttggagtgtgcaggaatggagaaaaacacaggtca
accttcccaagaaaggtgttgttacctaacaaccacctacaaatgttgca
gatacactctcctgtcttttgaattagctcactttgttaatgaatccgtt
tcgtttaattaattcagcgaatgaatatattaatgtatgttgtaggatgc
tgttctcagagcatggcatgctcacttctatctaaaagccaagtcagttg
ccattgcccacaggggagcctcgggagattgggcctactaacattccgtg
gtggagaaaacagaaggaccatgagtaatagacacataagattttcattg
tggcacaagtcccttccactcgactcgagccccgggctaccttgccagca
gagtcttgcccaacacccgcaagggcccacatgggacccccccacgggat
cctaagacctctggtgagtggaacacagcgcctgccccaatccaatcgcg
cggaacctgagactgcggtacatagggaagcaggctacccgggcctgatc
tggggcacaagtcccttccgctcgactcgagccccgggctaccttgccag
cagagtcttgcccaacacccgcaagggcccacacgggactccccacggga
tcctaagacctctggtgagtggaacacagcgcctgccccaatccaatcgc
gcggaacctgagactgcggtacatagggaagcaggctacccgggcctgat
ctggggcacaagtcccttccgctcgactcgagccccgggctaccttgcca
gcagagtcttgcccaacaccgggcaagggcccacacgggactcccccacg
ggatcctaagacctctagtgagtgaacaacacttctgccagagtctgatc
gaacacaaatatctgggtacctgcctgcagaaagaagagctgcttgcaga
agaatacctctgcccactgaaactatgagagtggcctaccctccagtcct
gctttatgaaggctaacgagtcaactggagaacaagctcttaacggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_126546336_126547056
seq2: B6Ng01-315I05.b_45_765

seq1  GAATTCCTAACAAACCCAAAATTAAAGTTCAACACATATATTCGTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACAAACCCAAAATTAAAGTTCAACACATATATTCGTGGCTT  50

seq1  AGTAGAAAAATGCTATATCTAGTCAAGGCAGGGATCAAAAGAAATCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAAATGCTATATCTAGTCAAGGCAGGGATCAAAAGAAATCCATT  100

seq1  CACCTGTACCATGCTTTGATAACTAAATCTCTGAGTTTTAATTGAATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTACCATGCTTTGATAACTAAATCTCTGAGTTTTAATTGAATAGC  150

seq1  CGATATCTACTCAGAAACCAAATATCTCAGTGATTGGGGGAGAGGGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATATCTACTCAGAAACCAAATATCTCAGTGATTGGGGGAGAGGGGTCC  200

seq1  CTGGGTAGGGGGAGGGGCTGGGCAAAACCTACTTGATTAATGATTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGGGGGAGGGGCTGGGCAAAACCTACTTGATTAATGATTTCTTT  250

seq1  AATGCTTTGACCTCCCTTCTAGCCACTGACCAGAGGTAGGGAAGAAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTGACCTCCCTTCTAGCCACTGACCAGAGGTAGGGAAGAAAGGT  300

seq1  TAATAGGAAAAAGGGGTTGTGGACCTGTTTAGAAGTAGTTCCTTTGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGAAAAAGGGGTTGTGGACCTGTTTAGAAGTAGTTCCTTTGGCAA  350

seq1  TTCCAGTTGCTATTGTCGGGATATCAGCAGTCCAGTCCAGTAGCACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGCTATTGTCGGGATATCAGCAGTCCAGTCCAGTAGCACATGC  400

seq1  CAAACATGAATGAATAGTGGCTCCACAATCCAACAGAAACAGCAAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAATGAATAGTGGCTCCACAATCCAACAGAAACAGCAAGGCTC  450

seq1  CCCTGAATCGGCACAAGTCAGTGGAGGTAGCCAGAATCAGTCAGACTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATCGGCACAAGTCAGTGGAGGTAGCCAGAATCAGTCAGACTAGC  500

seq1  ACAAGAAGTCCTTTGGTATGTTTCTCTCCACAAAGTGAAGACTAGCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGTCCTTTGGTATGTTTCTCTCCACAAAGTGAAGACTAGCTAAG  550

seq1  ACCAGGGAAGACCAGTGAAACATTGAACAGCATAGCAGTGCAAGAGCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAAGACCAGTGAAACATTGAACAGCATAGCAGTGCAAGAGCTTC  600

seq1  CAGCTCACTGTCTGTTGGGTTCTATTTATCTTCTTTCTAAACATCACGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACTGTCTGTTGGGTTCTATTTATCTTCTTTCTAAACATCACGTG  650

seq1  CCCTCTTACAAGTCTCTTTTCAGCAAAACATCACATGCCCTCTCACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTACAAGTCTCTTTTCAGCAAAACATCACATGCCCTCTCACAAGA  700

seq1  CAGCTTCTAGCAAAACATTAT  721
      |||||||||||||||||||||
seq2  CAGCTTCTAGCAAAACATTAT  721


seq1: chr12_53264596_53265121
seq2: B6Ng01-315I05.g_539_1216 (reverse)

seq1  TCACTGTTAAGAGCTTGTTCTTCAGGTGACTCTGTTAGCCTCTAT-AAGG  49
      |||| |||||||||||||||| ||| |||||| ||||||||  || ||| 
seq2  TCACCGTTAAGAGCTTGTTCTCCAGTTGACTC-GTTAGCCTTCATAAAGC  49

seq1  AGATCTGGAGGGTAG--CACTCTCCTTAGTTTCAGTGGGCAGA-GTATTC  96
      ||  |||||||||||  |||||| | ||||||||||||||||| ||||||
seq2  AGGACTGGAGGGTAGGCCACTCT-CATAGTTTCAGTGGGCAGAGGTATTC  98

seq1  -TCTGCAGGCAAGCTC-TCTTCTTGCAGGGAAGGTACCCAGATATCTGGT  144
       |||||| || ||||| ||||  |||| || |||||||||||||| | ||
seq2  TTCTGCAAGC-AGCTCTTCTTTCTGCA-GGCAGGTACCCAGATAT-TTGT  145

seq1  GTTCGAACCAGACTCCTGGCAGAAGTTGTGTTCCACTCACTAGAGGTCTT  194
      ||||| | |||||| |||||||||||  |||| |||||||||||||||||
seq2  GTTCG-ATCAGACT-CTGGCAGAAGTGTTGTT-CACTCACTAGAGGTCTT  192

seq1  AGGATCCCGT-GTGGAATCCTGTGTGGGCCCTTG-CGGGTGTCAGGC--G  240
      |||||||||| | ||| ||| ||||||||||||| | |||||  |||  |
seq2  AGGATCCCGTGGGGGAGTCCCGTGTGGGCCCTTGCCCGGTGTTGGGCAAG  242

seq1  ACTCCGCTGGCAAGGTAGCCCGGGGCTTTAGTGGAGCGGAAGGGGCTTGT  290
      |||| ||||||||||||||||||||||  ||| ||||||||||| |||||
seq2  ACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTCGAGCGGAAGGGACTTGT  292

seq1  GCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCAG  342

seq1  GTTCCGCGCGATTGGATTGGGGCAGGCTCTGTGTTCCACTCACCAGAGGT  390
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTTCCGCGCGATTGGATTGGGGCAGGCGCTGTGTTCCACTCACCAGAGGT  392

seq1  CTTAGGATCCCGTGGGGAGTCCTGTGTGGGCCCTTGCGGGTGTTGGGCAA  440
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTAGGATCCCGTGGGGAGTCCCGTGTGGGCCCTTGCGGGTGTTGGGCAA  442

seq1  GACTCTGCTGGCAAGGTAGCCC---------------CGGA---GACT--  470
      ||||||||||||||||||||||               ||||   ||||  
seq2  GACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTCGAGCGGAAGGGACTTG  492

seq1  ------------------------CTGCT---------------------  475
                              |||||                     
seq2  TGCCCCAGATCAGGCCCGGGTAGCCTGCTTCCCTATGTACCGCAGTCTCA  542

seq1  ---------------------GGCA-------------------------  479
                           ||||                         
seq2  GGTTCCGCGCGATTGGATTGGGGCAGGCGCTGTGTTCCACTCACCAGAGG  592

seq1  -------------------------AGGTAGCCCC--------------C  490
                               | || | |||              |
seq2  TCTTAGGATCCCGTGGGGGGGTCCCATGTGGGCCCTTGCGGGTGTTGGGC  642

seq1  GAGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTC  526
       |||||||||||||||||||||||||||||||||||
seq2  AAGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAGTC  678


| Home | SequenceCutter | Blast | Download |