BAC Information

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BAC

Clone NameB6Ng01-315M20
Chromosome5 (Build37)
Map Location 120,522,421 - 120,671,779
singlet/doubletdoublet
Overlap geneRbm19
Upstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
Downstream geneLOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315M20.bB6Ng01-315M20.g
ACCGA106355GA106356
length2181,075
definitionB6Ng01-315M20.b B6Ng01-315M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,522,421 - 120,522,638)(120,670,711 - 120,671,779)
sequence
aacagaacttctcctccaagacagccagggtcctggctctagtttgagcg
cctggaccaagcccttaggtatctccatacatctttgtctgcggtagaac
acggtcctctgggcacatgagccaaaaccaccatcatcagctgtgacagc
ttgcaaacagccctgcagcccgggcctattgaccctccctcataaaagga
gggtgtggtgaggggagg
gaattccagagtctttcaggtcccgccaggccctgcagacagtgacattt
tacacggttcccctttggtcagctctgggcagtgataacaggattaggct
tccaggcagatcacttaattaaactttggaaaagcgcgctctcttgcttt
ctccttcttcgcagctggaggggaggggctggcgcctgaagggccagatg
tggaccccacccatcattttcacgaatacatccaacctctggggactgag
ggtgtggcatgggtggtacagggagggccagactccatccctccctgtct
gtcacttgccccttgtccattctcagaagaactagggagaaccctgctga
tcccaagaggctgtagaggttcatttgcaccttaaagctcctcccactaa
aggggtggagtctatctttccacctcttgagtttgagttccttccactaa
agagcagaatacgttttcctgtccttaaactttggcccatccaccctaga
ttctgggtgtgttcttggacccaattgtctgggccaggctaagctggtca
ctgtgacctaatttggccaagggactgtggggaaagctaaggtgttcgag
ctgagccaagagcccgcaagaccctgaagaccctgtggcttctcactccc
acattgaaagtaagctgggacgtgatctcctaatgccacattctcaacaa
cagagaccagtctagactacctgtcagccaatgaatgctctatcggagcg
agaagccagtctagatccacagaggcacccagcaacctttcactgagcag
aggtacctgagagtgaagggttaaaatctggcgaaccatgatgcagagac
ttgcatcatgtgatgcttatggtactggggtatccatcagagtactgggg
gcatttgttcacagcagtgttaattccaccctcattaccttacttcctat
taactcactttgtcctcatcctccaaacttttcaaatcaagaacatgtaa
ggctcctcaaaaaacatgtccaaatgagacccgatcatgagcatacccgg
tcctctccttgttgccttaagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_120522421_120522638
seq2: B6Ng01-315M20.b_55_272

seq1  AACAGAACTTCTCCTCCAAGACAGCCAGGGTCCTGGCTCTAGTTTGAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTTCTCCTCCAAGACAGCCAGGGTCCTGGCTCTAGTTTGAGCG  50

seq1  CCTGGACCAAGCCCTTAGGTATCTCCATACATCTTTGTCTGCGGTAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCAAGCCCTTAGGTATCTCCATACATCTTTGTCTGCGGTAGAAC  100

seq1  ACGGTCCTCTGGGCACATGAGCCAAAACCACCATCATCAGCTGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCTCTGGGCACATGAGCCAAAACCACCATCATCAGCTGTGACAGC  150

seq1  TTGCAAACAGCCCTGCAGCCCGGGCCTATTGACCCTCCCTCATAAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACAGCCCTGCAGCCCGGGCCTATTGACCCTCCCTCATAAAAGGA  200

seq1  GGGTGTGGTGAGGGGAGG  218
      ||||||||||||||||||
seq2  GGGTGTGGTGAGGGGAGG  218

seq1: chr5_120670711_120671779
seq2: B6Ng01-315M20.g_68_1142 (reverse)

seq1  CCCACTTAAG--CACAAGGAG-GGGCCGTGTATGCTCATTGATCGG--CT  45
      ||||||||||   |||||||| || ||| ||||||||| |||||||  ||
seq2  CCCACTTAAGGCAACAAGGAGAGGACCGGGTATGCTCA-TGATCGGGTCT  49

seq1  CATTTGGGACATG-TTTTTGAGG-GCCTGACATGTTCCTGA-TTGGAGAG  92
      ||||| ||||||| ||||||||| |||| |||||||| ||| ||| | ||
seq2  CATTT-GGACATGTTTTTTGAGGAGCCTTACATGTTCTTGATTTGAAAAG  98

seq1  TTTGGAGGATGAGGGACAAGTGAGGTAATAGGGAAGT-AGGTAATGAGGG  141
      ||||||||||||||   ||||||| ||||| |||||| ||||||||||||
seq2  TTTGGAGGATGAGGACAAAGTGAGTTAATA-GGAAGTAAGGTAATGAGGG  147

seq1  TGGAATTAACACTGCTGTGAAACAAATGCCCCCAGTACCCTG-TGGATAC  190
      ||||||||||||||||||| |||||||||||||||||| ||| |||||||
seq2  TGGAATTAACACTGCTGTG-AACAAATGCCCCCAGTACTCTGATGGATAC  196

seq1  CCCAGTACCATAAGCATCACATGATGCAAGTCTCTGCATCATGGTTCGCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTACCATAAGCATCACATGATGCAAGTCTCTGCATCATGGTTCGCC  246

seq1  AGATTTTAACCCTTCACTCTCAGGTACCTCTGCTCAGTGAAAGGTTGCTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAACCCTTCACTCTCAGGTACCTCTGCTCAGTGAAAGGTTGCTG  296

seq1  GGTGCCTCTGTGGATCTAGACTGGCTTCTCGCTCCGATAGAGCATTCATT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTCTGTGGATCTAGACTGGCTTCTCGCTCCGATAGAGCATTCATT  346

seq1  GGCTGACAGGTAGTCTAGACTGGTCTCTGTTGTTGAGAATGTGGCATTAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACAGGTAGTCTAGACTGGTCTCTGTTGTTGAGAATGTGGCATTAG  396

seq1  GAGATCACGTCCCAGCTTACTTTCAATGTGGGAGTGAGAAGCCACAGGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACGTCCCAGCTTACTTTCAATGTGGGAGTGAGAAGCCACAGGGT  446

seq1  CTTCAGGGTCTTGCGGGCTCTTGGCTCAGCTCGAACACCTTAGCTTTCCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGTCTTGCGGGCTCTTGGCTCAGCTCGAACACCTTAGCTTTCCC  496

seq1  CACAGTCCCTTGGCCAAATTAGGTCACAGTGACCAGCTTAGCCTGGCCCA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCCCTTGGCCAAATTAGGTCACAGTGACCAGCTTAGCCTGGCCCA  546

seq1  GACAATTGGGTCCAAGAACACACCCAGAATCTAGGGTGGATGGGCCAAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGGGTCCAAGAACACACCCAGAATCTAGGGTGGATGGGCCAAAG  596

seq1  TTTAAGGACAGGAAAACGTATTCTGCTCTTTAGTGGAAGGAACTCAAACT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGACAGGAAAACGTATTCTGCTCTTTAGTGGAAGGAACTCAAACT  646

seq1  CAAGAGGTGGAAAGATAGACTCCACCCCTTTAGTGGGAGGAGCTTTAAGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGTGGAAAGATAGACTCCACCCCTTTAGTGGGAGGAGCTTTAAGG  696

seq1  TGCAAATGAACCTCTACAGCCTCTTGGGATCAGCAGGGTTCTCCCTAGTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATGAACCTCTACAGCCTCTTGGGATCAGCAGGGTTCTCCCTAGTT  746

seq1  CTTCTGAGAATGGACAAGGGGCAAGTGACAGACAGGGAGGGATGGAGTCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGAATGGACAAGGGGCAAGTGACAGACAGGGAGGGATGGAGTCT  796

seq1  GGCCCTCCCTGTACCACCCATGCCACACCCTCAGTCCCCAGAGGTTGGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCCCTGTACCACCCATGCCACACCCTCAGTCCCCAGAGGTTGGAT  846

seq1  GTATTCGTGAAAATGATGGGTGGGGTCCACATCTGGCCCTTCAGGCGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGTGAAAATGATGGGTGGGGTCCACATCTGGCCCTTCAGGCGCCA  896

seq1  GCCCCTCCCCTCCAGCTGCGAAGAAGGAGAAAGCAAGAGAGCGCGCTTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCCCTCCAGCTGCGAAGAAGGAGAAAGCAAGAGAGCGCGCTTTT  946

seq1  CCAAAGTTTAATTAAGTGATCTGCCTGGAAGCCTAATCCTGTTATCACTG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTTTAATTAAGTGATCTGCCTGGAAGCCTAATCCTGTTATCACTG  996

seq1  CCCAGAGCTGACCAAAGGGGAACCGTGTAAAATGTCACTGTCTGCAGGGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCTGACCAAAGGGGAACCGTGTAAAATGTCACTGTCTGCAGGGC  1046

seq1  CTGGCGGGACCTGAAAGACTCTGGAATTC  1069
      |||||||||||||||||||||||||||||
seq2  CTGGCGGGACCTGAAAGACTCTGGAATTC  1075