BAC Information

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BAC

Clone NameB6Ng01-316H22
Chromosome5 (Build37)
Map Location 127,420,156 - 127,580,835
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039178, LOC665760, LOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H22.bB6Ng01-316H22.g
ACCGA106877GA106878
length885613
definitionB6Ng01-316H22.b B6Ng01-316H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,420,156 - 127,420,966)(127,580,223 - 127,580,835)
sequence
gaattcatgggagtgtaccccactctgagagggagaatctacaaaagcac
ttagcagaagcatagacactgttgtcgactggccagaaaatgaaacacag
agattgctaacacagtacgctaaagctgaggttggtctcagcatctacag
gaccattaaacatgtggttcttctatggcatttcccatccagaagcctgg
gtcctagaacttggttattgcttcccagaaagtagagtctactagaggct
atctaatctctatctaacctaatctatctagtgtgtctgtctgcctatct
gtctaccatttatctatagtgatttgaattagaatggtctctataggctt
atacatttaattttttggtccttattcaggggagttgtttgggggaaatt
aggtgtgggcttgctggaggagtcactaaagatgggctttgagacttaaa
aaactcccctctccacatcaccaggtccagtatctctccttttgctgcct
tcaggtcaagacataagctcttagctactgcttcagcatcattccatgct
tcccattaacatggtcatggaatctaaccctctgaagctgaaatctccaa
atagattgtttgttctttaagttgccttggccttagtgttttaccacagc
aatagaaaagtaaaatatctatctgtctgtctgtctgtctgtctgtctgt
ctgtctgtctatctatctatctatctacctacctacctacctacctacct
acctacctacctacctacctatcatctatctatccatctgtgatggagtg
tatattcttgagctagagagcagcactaatagaaagtgtggccttgttgg
agtagatgttatcactgtggccatggggctttaat

gaattcaagggcacgggatctgtctctgtgggatggaaacttcagggata
attggctagaaagccaagaaaaatgaatgccgaagccaggcggatgtttg
agactcccttcaaatgtcataaaaacccactgactgctgacagtggttct
ttgaggctttgatccacagatgtattttgctaaaaagaccccagctgccc
atttgactcaggccctttataatgaaaatgttttatttctcttctctgtt
tctgctcccgttgaactgaattggcagaaaatggtaccacgtagtgtggg
atgctcgctcagccgactttatttctgcatctaggaaacaggatcaatgt
gctggagttaagcttggtgcttgttattcactaaatccacttcccagagc
gctctgcttaagagtgcggggacaatatgtgaggtatgatagtggaatat
tggggtttctttgagaataaagccttccttggggatctaggtaggtttgc
agaaactccacagtcaatgaagctgcccctagacagtggcttttaggttc
tcaaattggaagagtaaaattcagagcttggaagaggtgaattttagagg
ggagtttattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_127420156_127420966
seq2: B6Ng01-316H22.b_49_859

seq1  GAATTCATGGGAGTGTACCCCACTCTGAGAGGGAGAATCTACAAAAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGAGTGTACCCCACTCTGAGAGGGAGAATCTACAAAAGCAC  50

seq1  TTAGCAGAAGCATAGACACTGTTGTCGACTGGCCAGAAAATGAAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAAGCATAGACACTGTTGTCGACTGGCCAGAAAATGAAACACAG  100

seq1  AGATTGCTAACACAGTACGCTAAAGCTGAGGTTGGTCTCAGCATCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTAACACAGTACGCTAAAGCTGAGGTTGGTCTCAGCATCTACAG  150

seq1  GACCATTAAACATGTGGTTCTTCTATGGCATTTCCCATCCAGAAGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTAAACATGTGGTTCTTCTATGGCATTTCCCATCCAGAAGCCTGG  200

seq1  GTCCTAGAACTTGGTTATTGCTTCCCAGAAAGTAGAGTCTACTAGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAGAACTTGGTTATTGCTTCCCAGAAAGTAGAGTCTACTAGAGGCT  250

seq1  ATCTAATCTCTATCTAACCTAATCTATCTAGTGTGTCTGTCTGCCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATCTCTATCTAACCTAATCTATCTAGTGTGTCTGTCTGCCTATCT  300

seq1  GTCTACCATTTATCTATAGTGATTTGAATTAGAATGGTCTCTATAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCATTTATCTATAGTGATTTGAATTAGAATGGTCTCTATAGGCTT  350

seq1  ATACATTTAATTTTTTGGTCCTTATTCAGGGGAGTTGTTTGGGGGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTAATTTTTTGGTCCTTATTCAGGGGAGTTGTTTGGGGGAAATT  400

seq1  AGGTGTGGGCTTGCTGGAGGAGTCACTAAAGATGGGCTTTGAGACTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGGCTTGCTGGAGGAGTCACTAAAGATGGGCTTTGAGACTTAAA  450

seq1  AAACTCCCCTCTCCACATCACCAGGTCCAGTATCTCTCCTTTTGCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCCTCTCCACATCACCAGGTCCAGTATCTCTCCTTTTGCTGCCT  500

seq1  TCAGGTCAAGACATAAGCTCTTAGCTACTGCTTCAGCATCATTCCATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCAAGACATAAGCTCTTAGCTACTGCTTCAGCATCATTCCATGCT  550

seq1  TCCCATTAACATGGTCATGGAATCTAACCCTCTGAAGCTGAAATCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTAACATGGTCATGGAATCTAACCCTCTGAAGCTGAAATCTCCAA  600

seq1  ATAGATTGTTTGTTCTTTAAGTTGCCTTGGCCTTAGTGTTTTACCACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGTTTGTTCTTTAAGTTGCCTTGGCCTTAGTGTTTTACCACAGC  650

seq1  AATAGAAAAGTAAAATATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGTAAAATATCTATCTGTCTGTCTGTCTGTCTGTCTGTCTGT  700

seq1  CTGTCTGTCTATCTATCTATCTATCTACCTACCTACCTACCTACCTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTATCTATCTATCTATCTACCTACCTACCTACCTACCTACCT  750

seq1  ACCTACCTACCTACCTACCTATCATCTATCTATCCATCTGTGATGGAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCTACCTACCTACCTATCATCTATCTATCCATCTGTGATGGAGTG  800

seq1  TATATTCTTGA  811
      |||||||||||
seq2  TATATTCTTGA  811


seq1: chr5_127580223_127580835
seq2: B6Ng01-316H22.g_65_677 (reverse)

seq1  TATAATAAACTCCCCTCTAAAATTCACCTCTTCCAAGCTCTGAATTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAACTCCCCTCTAAAATTCACCTCTTCCAAGCTCTGAATTTTAC  50

seq1  TCTTCCAATTTGAGAACCTAAAAGCCACTGTCTAGGGGCAGCTTCATTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAATTTGAGAACCTAAAAGCCACTGTCTAGGGGCAGCTTCATTGA  100

seq1  CTGTGGAGTTTCTGCAAACCTACCTAGATCCCCAAGGAAGGCTTTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGTTTCTGCAAACCTACCTAGATCCCCAAGGAAGGCTTTATTCT  150

seq1  CAAAGAAACCCCAATATTCCACTATCATACCTCACATATTGTCCCCGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACCCCAATATTCCACTATCATACCTCACATATTGTCCCCGCAC  200

seq1  TCTTAAGCAGAGCGCTCTGGGAAGTGGATTTAGTGAATAACAAGCACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCAGAGCGCTCTGGGAAGTGGATTTAGTGAATAACAAGCACCAA  250

seq1  GCTTAACTCCAGCACATTGATCCTGTTTCCTAGATGCAGAAATAAAGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAACTCCAGCACATTGATCCTGTTTCCTAGATGCAGAAATAAAGTCG  300

seq1  GCTGAGCGAGCATCCCACACTACGTGGTACCATTTTCTGCCAATTCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCGAGCATCCCACACTACGTGGTACCATTTTCTGCCAATTCAGTT  350

seq1  CAACGGGAGCAGAAACAGAGAAGAGAAATAAAACATTTTCATTATAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGGAGCAGAAACAGAGAAGAGAAATAAAACATTTTCATTATAAAGG  400

seq1  GCCTGAGTCAAATGGGCAGCTGGGGTCTTTTTAGCAAAATACATCTGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTCAAATGGGCAGCTGGGGTCTTTTTAGCAAAATACATCTGTGG  450

seq1  ATCAAAGCCTCAAAGAACCACTGTCAGCAGTCAGTGGGTTTTTATGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCCTCAAAGAACCACTGTCAGCAGTCAGTGGGTTTTTATGACAT  500

seq1  TTGAAGGGAGTCTCAAACATCCGCCTGGCTTCGGCATTCATTTTTCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGAGTCTCAAACATCCGCCTGGCTTCGGCATTCATTTTTCTTGG  550

seq1  CTTTCTAGCCAATTATCCCTGAAGTTTCCATCCCACAGAGACAGATCCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGCCAATTATCCCTGAAGTTTCCATCCCACAGAGACAGATCCCG  600

seq1  TGCCCTTGAATTC  613
      |||||||||||||
seq2  TGCCCTTGAATTC  613


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