BAC Information

Click to search

BAC

Clone NameB6Ng01-316N19
Chromosome5 (Build37)
Map Location 36,613,073 - 36,733,038
singlet/doubletdoublet
Overlap geneSorcs2
Upstream geneAdra2c, Hmx1, Cpz, Plk-ps1, 2310079F23Rik, Acox3, Htra3, Sh3tc1, Ablim2, Afap1, LOC100040209, 2310020A21Rik
Downstream geneGrpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1, Jakmip1, EG330070, Gm1043, LOC100040936, Crmp1, Evc, Evc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316N19.bB6Ng01-316N19.g
ACCGA107152GA107153
length1,1751,026
definitionB6Ng01-316N19.b B6Ng01-316N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,613,073 - 36,614,244)(36,732,031 - 36,733,038)
sequence
gaattctgcttcatgatgacaacctcaggtgtccagtacagtgagggaga
gggagttcacacagacaggtaactcatgaagaaaagacaacaggttcaga
tcttgccaccaaatcaacccattaacccaaggttcattaaacagtgtctt
agttagggtcttgttgctgtgaaaagacacaatgaccaagtcaactctta
taaaggacaacatttaattgaggctggcttacaggttcaggggttcagtc
catcatcatcatggtgggaatcatgacatcatacagacagacatggtgct
agaggagctgagagttctacatcttgattcaaaaggcagcaggaggagac
tatgtcacactggtagacttgagaatatatatgagacctcaaagtaccag
ctccacagtgacacacttcctctaacaaagccacgtctcctctgataagg
tcacacctcctaatactgccaccacccctgggccaaacgtattcaaatca
ccaccaaaaggaactcaagagagacagaagaaactgacaaagcagacagc
tgttcactccatcatccctgtatcatcagggcaccactactcatcacccc
atcatctttccatcactgcaccatcacactgttattccatcactgcatca
tcactctatcatgccatcatcactgcatcactgcatcattgctctatcac
cactgcaacatcacctcatcatcattgcatcatcacttcattaccactgc
atcatcattccatcatcactatgtcatcactgtatcatcactacatcatc
agtctaccatgccaccccccagtctatcatgccatcattactccatcact
gcatcattgatgcatcatgactgcatctcatttccaccattactgtatca
ccactgcatcaccatcccaccatcactgcatcattactacatcatctcct
cagcactgcatcaccactccatcactgcatcatcaaccccaattaccact
gcatcattgcttcatcattactttgtcatcattcatcatcactgcatctc
cactaacatcatcactgcaacttctcagtatgcaaatccactccaccata
acctctcacagctgaaattatttgcgtgtatcatcatcaatcaccgaatc
atcagtcttttatttgcgtcatcac
gaattctttccagagtgtcctcagggctgtgtgaacatgtgggtggggga
ttcagggagactccctagaggaggtgcagatggagccgctctgaaggaca
aggagaagagcctcacccagtctgaggtggagactgggaaagaaagcaag
gatattgaggccaggagggaggtgaggagctgagaagcccagagagctct
caggcagaggagggagacagctgccatcaggaagtttggctcagaggtgc
cagggcagcccttcagcaaagttcctgacacacttcacacacccacttct
gctttaatgaaggggctcttttagtctatagttgcaggaggttccagagc
gcatgctaaggaggtcgtacactagctcgtctgcacactcgttgggtcag
tctgtggcttgctcaggcctctccagagttgatgttactccacagtgatg
attttccagtcaggttaggacttgccaggggtgacgcgaatgagtacaga
gttggagcttctggaaaagcagctgggtgcctttgtggggccccgagctt
acaggctaccttctggttggggctctctgggacccaaactttaagagtcc
attgatggctctctttggatgctctgtgggttaccaagggaggctgagcc
ctgagggtctaatgatgtcaccaggactgctactcaagatcattccttca
gggtgcagggaccagggctgagctctgaccctgcagaatttatagtttgt
cagatgtgaatactaatctatatgtgttaggctggcttgggtctgcacat
gatagacatcaacagagtgcatgctcgtatcagatcatgtcatggctgtc
ttgggttattgggagacccctttccagggtctttgcgtgagtgtgatctg
ggattctgagtggtgaaagaagccaacaatatgattggggatgggcatgc
ccccacatggtagagtcggggtgtgatcaccatgctttttctgggatccg
cccccacaaaggttggaaactgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_36613073_36614244
seq2: B6Ng01-316N19.b_50_1224

seq1  GAATTCTGCTTCATGATGACAACCTCAGGTGTCCAGTACAGTGAGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCATGATGACAACCTCAGGTGTCCAGTACAGTGAGGGAGA  50

seq1  GGGAGTTCACACAGACAGGTAACTCATGAAGAAAAGACAACAGGTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCACACAGACAGGTAACTCATGAAGAAAAGACAACAGGTTCAGA  100

seq1  TCTTGCCACCAAATCAACCCATTAACCCAAGGTTCATTAAACAGTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCACCAAATCAACCCATTAACCCAAGGTTCATTAAACAGTGTCTT  150

seq1  AGTTAGGGTCTTGTTGCTGTGAAAAGACACAATGACCAAGTCAACTCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGTCTTGTTGCTGTGAAAAGACACAATGACCAAGTCAACTCTTA  200

seq1  TAAAGGACAACATTTAATTGAGGCTGGCTTACAGGTTCAGGGGTTCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACAACATTTAATTGAGGCTGGCTTACAGGTTCAGGGGTTCAGTC  250

seq1  CATCATCATCATGGTGGGAATCATGACATCATACAGACAGACATGGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCATCATGGTGGGAATCATGACATCATACAGACAGACATGGTGCT  300

seq1  AGAGGAGCTGAGAGTTCTACATCTTGATTCAAAAGGCAGCAGGAGGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGAGAGTTCTACATCTTGATTCAAAAGGCAGCAGGAGGAGAC  350

seq1  TATGTCACACTGGTAGACTTGAGAATATATATGAGACCTCAAAGTACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCACACTGGTAGACTTGAGAATATATATGAGACCTCAAAGTACCAG  400

seq1  CTCCACAGTGACACACTTCCTCTAACAAAGCCACGTCTCCTCTGATAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTGACACACTTCCTCTAACAAAGCCACGTCTCCTCTGATAAGG  450

seq1  TCACACCTCCTAATACTGCCACCACCCCTGGGCCAAACGTATTCAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCTCCTAATACTGCCACCACCCCTGGGCCAAACGTATTCAAATCA  500

seq1  CCACCAAAAGGAACTCAAGAGAGACAGAAGAAACTGACAAAGCAGACAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAAAGGAACTCAAGAGAGACAGAAGAAACTGACAAAGCAGACAGC  550

seq1  TGTTCACTCCATCATCCCTGTATCATCAGGGCACCACTACTCATCACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTCCATCATCCCTGTATCATCAGGGCACCACTACTCATCACCCC  600

seq1  ATCATCTTTCCATCACTGCACCATCACACTGTTATTCCATCACTGCATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTTTCCATCACTGCACCATCACACTGTTATTCCATCACTGCATCA  650

seq1  TCACTCTATCATGCCATCATCACTGCATCACTGCATCATTGCTCTATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTATCATGCCATCATCACTGCATCACTGCATCATTGCTCTATCAC  700

seq1  CACTGCAACATCACCTCATCATCATTGCATCATCACTTCATTACCACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAACATCACCTCATCATCATTGCATCATCACTTCATTACCACTGC  750

seq1  ATCATCATTCCATCATCACTATGTCATCACTGTATCATCACTACATCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTCCATCATCACTATGTCATCACTGTATCATCACTACATCATC  800

seq1  AGTCTACCATGCCACCCCCCAGTCTATCATGCCATCATTACTCCATCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCATGCCACCCCCCAGTCTATCATGCCATCATTACTCCATCACT  850

seq1  GCATCATTGATGCATCATGACTGCATCTCATTTCCACCATTACTGTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATTGATGCATCATGACTGCATCTCATTTCCACCATTACTGTATCA  900

seq1  CCACTGCATCACCATCCCACCATCACTGCATCATTACTACATCATCTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCATCACCATCCCACCATCACTGCATCATTACTACATCATCTCCT  950

seq1  CAGCACTGCATCACCACTCCATCACTGCATCATCA--CCCCATTACCACT  998
      |||||||||||||||||||||||||||||||||||  ||| |||||||||
seq2  CAGCACTGCATCACCACTCCATCACTGCATCATCAACCCCAATTACCACT  1000

seq1  GCATCATTGCTTCATCATTACTTTGTCATCATTCCATCATCACTGCATCT  1048
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCATCATTGCTTCATCATTACTTTGTCATCATT-CATCATCACTGCATCT  1049

seq1  CCACT-ACATCATCACTGCAACTCCTCAGTATTGCAAAATCACTCCACCA  1097
      ||||| ||||||||||||||||| ||||||| ||||||  ||||||||||
seq2  CCACTAACATCATCACTGCAACTTCTCAGTA-TGCAAATCCACTCCACCA  1098

seq1  TAAACCTCTCACAGCTG-AATTA-TTGC-TGTATCATCATTCCATCACCG  1144
      | ||||||||||||||| ||||| |||| |||||||||| || |||||||
seq2  T-AACCTCTCACAGCTGAAATTATTTGCGTGTATCATCA-TCAATCACCG  1146

seq1  AATCATCACTTCTTTA-TTGCGTCATCAC  1172
      |||||||| |  |||| ||||||||||||
seq2  AATCATCAGTCTTTTATTTGCGTCATCAC  1175

seq1: chr5_36732031_36733038
seq2: B6Ng01-316N19.g_72_1097 (reverse)

seq1  TCTTCAGTTTCCAGCC-TTGT-GGGGCGGGT-CCAG-AAAAGCGT-GTGA  45
      ||||||||||||| || |||| ||||||| | |||| |||||| | ||||
seq2  TCTTCAGTTTCCAACCTTTGTGGGGGCGGATCCCAGAAAAAGCATGGTGA  50

seq1  TCACA--CCGAC-CTGCCATGT-GGGGCATGCCCATCCCC-ATCATATTG  90
      |||||  ||||| || |||||| ||||||||||||||||| |||||||||
seq2  TCACACCCCGACTCTACCATGTGGGGGCATGCCCATCCCCAATCATATTG  100

seq1  -TGGCTTCTTTCA-CACTCAGAAT-CCAGATCACACTCACGC-AAGACCC  136
       |||||||||||| |||||||||| ||||||||||||||||| |||||||
seq2  TTGGCTTCTTTCACCACTCAGAATCCCAGATCACACTCACGCAAAGACCC  150

seq1  TGGAA--GGGTCTCCCA--TACCCAAGACAGCCATGACATGATCTGATAC  182
      |||||  ||||||||||   ||||||||||||||||||||||||||||||
seq2  TGGAAAGGGGTCTCCCAATAACCCAAGACAGCCATGACATGATCTGATAC  200

seq1  GAGCATGCACTCTGTTGATGTCTATCATGTGCAGACCCAAGCCAGCCTAA  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCACTCTGTTGATGTCTATCATGTGCAGACCCAAGCCAGCCTAA  250

seq1  CACATATAGATTAGTATTCACATCTGACAAACTATAAATTCTGCAGGGTC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATAGATTAGTATTCACATCTGACAAACTATAAATTCTGCAGGGTC  300

seq1  AGAGCTCAGCCCTGGTCCCTGCACCCTGAAGGAATGATCTTGAGTAGCAG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAGCCCTGGTCCCTGCACCCTGAAGGAATGATCTTGAGTAGCAG  350

seq1  TCCTGGTGACATCATTAGACCCTCAGGGCTCAGCCTCCCTTGGTAACCCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGACATCATTAGACCCTCAGGGCTCAGCCTCCCTTGGTAACCCA  400

seq1  CAGAGCATCCAAAGAGAGCCATCAATGGACTCTTAAAGTTTGGGTCCCAG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATCCAAAGAGAGCCATCAATGGACTCTTAAAGTTTGGGTCCCAG  450

seq1  AGAGCCCCAACCAGAAGGTAGCCTGTAAGCTCGGGGCCCCACAAAGGCAC  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCAACCAGAAGGTAGCCTGTAAGCTCGGGGCCCCACAAAGGCAC  500

seq1  CCAGCTGCTTTTCCAGAAGCTCCAACTCTGTACTCATTCGCGTCACCCCT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCTTTTCCAGAAGCTCCAACTCTGTACTCATTCGCGTCACCCCT  550

seq1  GGCAAGTCCTAACCTGACTGGAAAATCATCACTGTGGAGTAACATCAACT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTCCTAACCTGACTGGAAAATCATCACTGTGGAGTAACATCAACT  600

seq1  CTGGAGAGGCCTGAGCAAGCCACAGACTGACCCAACGAGTGTGCAGACGA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGCCTGAGCAAGCCACAGACTGACCCAACGAGTGTGCAGACGA  650

seq1  GCTAGTGTACGACCTCCTTAGCATGCGCTCTGGAACCTCCTGCAACTATA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTACGACCTCCTTAGCATGCGCTCTGGAACCTCCTGCAACTATA  700

seq1  GACTAAAAGAGCCCCTTCATTAAAGCAGAAGTGGGTGTGTGAAGTGTGTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAGAGCCCCTTCATTAAAGCAGAAGTGGGTGTGTGAAGTGTGTC  750

seq1  AGGAACTTTGCTGAAGGGCTGCCCTGGCACCTCTGAGCCAAACTTCCTGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTTGCTGAAGGGCTGCCCTGGCACCTCTGAGCCAAACTTCCTGA  800

seq1  TGGCAGCTGTCTCCCTCCTCTGCCTGAGAGCTCTCTGGGCTTCTCAGCTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTGTCTCCCTCCTCTGCCTGAGAGCTCTCTGGGCTTCTCAGCTC  850

seq1  CTCACCTCCCTCCTGGCCTCAATATCCTTGCTTTCTTTCCCAGTCTCCAC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCCCTCCTGGCCTCAATATCCTTGCTTTCTTTCCCAGTCTCCAC  900

seq1  CTCAGACTGGGTGAGGCTCTTCTCCTTGTCCTTCAGAGCGGCTCCATCTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTGGGTGAGGCTCTTCTCCTTGTCCTTCAGAGCGGCTCCATCTG  950

seq1  CACCTCCTCTAGGGAGTCTCCCTGAATCCCCCACCCACATGTTCACACAG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTAGGGAGTCTCCCTGAATCCCCCACCCACATGTTCACACAG  1000

seq1  CCCTGAGGACACTCTGGAAAGAATTC  1008
      ||||||||||||||||||||||||||
seq2  CCCTGAGGACACTCTGGAAAGAATTC  1026