BAC Information

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BAC

Clone NameB6Ng01-317C06
Chromosome5 (Build37)
Map Location 151,348,717 - 151,441,315
singlet/doubletdoublet
Overlap geneBrca2, B230342M21Rik
Upstream gene4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419
Downstream geneBC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13, LOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317C06.bB6Ng01-317C06.g
ACCGA107360GA107361
length1,0961,082
definitionB6Ng01-317C06.b B6Ng01-317C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,348,717 - 151,349,825)(151,440,235 - 151,441,315)
sequence
gaattcatgtgcaagagcagtcacttcctatgagccatctccccagctcc
aagttgacaaactttattacccaacatttaaccacctttgtcactgatag
actttttagactgaaaagccttaaatattaaaaaatatacagaccagaca
caaacttctttaaattctaatttttacttaaaagctaaattttacctcag
gcaaaaataattttactattgtccttgtagatataaccttattttgttta
tttaagaaaaacctcaggctgctgaagtggttcagctggtaaaagtacct
gccactacctagcctgatggtgtgagttcaatcccagcacaccacatttt
agaaagacagcactgacttctggaagttgtcctctcaccttctctgcaca
ccccccccacacacacaaacatgcatacatgagtgcacacacatgtgcac
atacatgcccaataatgatgagtaaaattaattctaataaaaagacaaaa
aaactgctgaatacccaaatctgagtaattagtattttttattttctcca
gtacctatggtaatcctgtagcaataaagtagctactgtgtatcaaccaa
actgtgaaaataagttgtcacaggataagtgtgacttctacaggcagata
aacaagctgtacagatattctcttgaacagtgaacaggtgtatgtaacag
tgctgatggtggggcctgtaaagatcattgtgggcacttagcctctgttc
cacagatcacccatagaatcaccttcctgtagaatagatatagatggttc
aaattcacagtatatagagaggcataagaattctgggtctggccaagcgt
ggtggcatacgcctttaatcccagcactcgggaggcagaggcaggcggat
ttctgagtttgagtccagcctgattctacaaagtgagttccaggacagcc
aggctacacagagaaaccctgtctcaaaaagccaaaaaaaaaaaaaaaag
gaaagctatactcagagagtctaaatcacccagtcaacactccaggctat
tctcattttctactctactcatgatttatctgtctgcatttcacac
gaattctcaccattttgtgctttgtaaatttcagaggaaaccttgggtta
tattagtattgatttagtgcagttaactttaaaaactcgtggaagaatga
ttacagttgtcagtgtctagattataatgaatagaatatgtgtataaata
atgatttagaacaacctttttatgtaaattcttaacacatcactttcagg
ctttatacaggaaaaagagggtgttatgccacaaataactcctagtgttt
tgtatatttttaattgtgccagcatgtgtttgcatgcatgcatgtgtgtg
cctgtgcagtcgctgtcattcatgtggaggtcatgagtgagggtctggga
tcaaactcaggtagattagatttggtggcaaatgtttttacccgctgagc
tattcttttttagtttttctgtgtagccctggaactgtcctggaactcac
tttgtagaccaggctggcctcaaactcagaaatctgcctgcccctgcctc
cggagtgctgggattaaaggcgtgcaccaccacgctcggcatccactgag
ctattcttttggggaaaagatcatcaacaataaagagaatgattatcttt
tttaaaaaaaaaaaagcatggcttcatataaccaatccacaattggcttc
agactcactgaatagctgagaagtcctgatcctccctgctgccatctccc
aagtgctgagattataggaggcatgccaccaccattttcccttgaattgg
gaaattttaattgttcttttttagataattaatagaagttttagttattt
gtattaggaataatctatttttcttcaaagattgcttattagtaacactg
tcacatttcagtgttgtattgcaatgattatatatattatatataccacc
tctcagcatgtggtttgttaacttcaataagctgtgttacaacgtatttt
tttgtagctgggacgcagcgatggtgtgagccctaatcttagactagaca
aaaccacattacccatcattacccttgttctggtgggaactgaagacttt
tcagacttgtgtgtgagttgattgtctagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_151348717_151349825
seq2: B6Ng01-317C06.b_46_1141

seq1  GAATTCATGTGCAAGAGCAGTCACTTCCTATGAGCCATCTCCCCAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGCAAGAGCAGTCACTTCCTATGAGCCATCTCCCCAGCTCC  50

seq1  AAGTTGACAAACTTTATTACCCAACATTTAACCACCTTTGTCACTGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACAAACTTTATTACCCAACATTTAACCACCTTTGTCACTGATAG  100

seq1  ACTTTTTAGACTGAAAAGCCTTAAATATTAAAAAATATACAGACCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTAGACTGAAAAGCCTTAAATATTAAAAAATATACAGACCAGACA  150

seq1  CAAACTTCTTTAAATTCTAATTTTTACTTAAAAGCTAAATTTTACCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCTTTAAATTCTAATTTTTACTTAAAAGCTAAATTTTACCTCAG  200

seq1  GCAAAAATAATTTTACTATTGTCCTTGTAGATATAACCTTATTTTGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATAATTTTACTATTGTCCTTGTAGATATAACCTTATTTTGTTTA  250

seq1  TTTAAGAAAAACCTCAGGCTGCTGAAGTGGTTCAGCTGGTAAAAGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAACCTCAGGCTGCTGAAGTGGTTCAGCTGGTAAAAGTACCT  300

seq1  GCCACTACCTAGCCTGATGGTGTGAGTTCAATCCCAGCACACCACATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACCTAGCCTGATGGTGTGAGTTCAATCCCAGCACACCACATTTT  350

seq1  AGAAAGACAGCACTGACTTCTGGAAGTTGTCCTCTCACCTTCTCTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACAGCACTGACTTCTGGAAGTTGTCCTCTCACCTTCTCTGCACA  400

seq1  CCCCCCCCACACACACAAACATGCATACATGAGTGCACACACATGTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCACACACACAAACATGCATACATGAGTGCACACACATGTGCAC  450

seq1  ATACATGCCCAATAATGATGAGTAAAATTAATTCTAATAAAAAGACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCCCAATAATGATGAGTAAAATTAATTCTAATAAAAAGACAAAA  500

seq1  AAACTGCTGAATACCCAAATCTGAGTAATTAGTATTTTTTATTTTCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTGAATACCCAAATCTGAGTAATTAGTATTTTTTATTTTCTCCA  550

seq1  GTACCTATGGTAATCCTGTAGCAATAAAGTAGCTACTGTGTATCAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTATGGTAATCCTGTAGCAATAAAGTAGCTACTGTGTATCAACCAA  600

seq1  ACTGTGAAAATAAGTTGTCACAGGATAAGTGTGACTTCTACAGGCAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAAATAAGTTGTCACAGGATAAGTGTGACTTCTACAGGCAGATA  650

seq1  AACAAGCTGTACAGATATTCTCTTGAACAGTGAACAGGTGTATGTAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCTGTACAGATATTCTCTTGAACAGTGAACAGGTGTATGTAACAG  700

seq1  TGCTGATGGTGGGGCCTGTAAAGATCATTGTGGGCACTTAGCCTCTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATGGTGGGGCCTGTAAAGATCATTGTGGGCACTTAGCCTCTGTTC  750

seq1  CACAGATCACCCATAGAATCACCTTCCTGTAGAATAGATATAGATGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATCACCCATAGAATCACCTTCCTGTAGAATAGATATAGATGGTTC  800

seq1  AAATTCACAGTATATAGAGAGGCATAAGAATTCTGGGTCTGGCCAAGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACAGTATATAGAGAGGCATAAGAATTCTGGGTCTGGCCAAGCGT  850

seq1  GGTGGCATACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCATACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGAT  900

seq1  TTCTGAGTTTGAGTCCAGCCTGATTCTACAAAGTGAGTTCCAGGACAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGAGTCCAGCCTGATTCTACAAAGTGAGTTCCAGGACAGCC  950

seq1  AGGGCTACACAGAGAAACCCTGTCTCAAAAAGCCAAAAAAAAAAAAAAAA  1000
      | ||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  A-GGCTACACAGAGAAACCCTGTCTCAAAAAGCC--AAAAAAAAAAAAAA  997

seq1  AAAGAAAGCTATACTCAGAGAAGTCTTAAATCCACCCCAGTC-ACACTCC  1049
      || ||||||||||||||||| |||| ||||||   ||||||| |||||||
seq2  AAGGAAAGCTATACTCAGAG-AGTC-TAAATC--ACCCAGTCAACACTCC  1043

seq1  AGGCTATTCTCCAATTTTCCTACCTCTTACTCCATGGTTTATCTGTCTGC  1099
      |||||||||||  ||||| ||| ||| |||| |||| |||||||||||||
seq2  AGGCTATTCTC--ATTTT-CTA-CTC-TACT-CATGATTTATCTGTCTGC  1087

seq1  ATTTTCACAC  1109
      | ||||||||
seq2  A-TTTCACAC  1096

seq1: chr5_151440235_151441315
seq2: B6Ng01-317C06.g_66_1147 (reverse)

seq1  GTGCTAGACTATCACCTTCAACACACAGTCTGAAAAGTCTTCAGTTCCCA  50
      ||||||||| |||| ||   ||||| ||||||||||||||||||||||||
seq2  GTGCTAGACAATCAACTCACACACA-AGTCTGAAAAGTCTTCAGTTCCCA  49

seq1  CCAGA--CAGGGTAATGATGGGTAATGTGGTTTTGTCTAGTTCTAAGATT  98
      |||||   |||||||||||||||||||||||||||||||| |||||||||
seq2  CCAGAACAAGGGTAATGATGGGTAATGTGGTTTTGTCTAG-TCTAAGATT  98

seq1  AGTGCTCACACCATCGCTGCGTCCCAGCTAC-AAAAAATACGTTGTAACA  147
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGGCTCACACCATCGCTGCGTCCCAGCTACAAAAAAATACGTTGTAACA  148

seq1  CAGCTTATTGAAGTTAACAAACCACATGCTGAGAGGT-GTATATATAATA  196
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGCTTATTGAAGTTAACAAACCACATGCTGAGAGGTGGTATATATAATA  198

seq1  TATATAATCATTGCAATACAACACCTGAAATGTGACAGTGTTACTAATAA  246
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATATAATCATTGCAATACAACA-CTGAAATGTGACAGTGTTACTAATAA  247

seq1  GCAATCTTTGAAGAAAAATAGATTATTCCTAATACAAATAACTAAAACTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTTTGAAGAAAAATAGATTATTCCTAATACAAATAACTAAAACTT  297

seq1  CTATTAATTATCTAAAAAAGAACAATTAAAATTTCCCAATTCAAGGGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATTATCTAAAAAAGAACAATTAAAATTTCCCAATTCAAGGGAAA  347

seq1  ATGGTGGTGGCATGCCTCCTATAATCTCAGCACTTGGGAGATGGCAGCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGGCATGCCTCCTATAATCTCAGCACTTGGGAGATGGCAGCAG  397

seq1  GGAGGATCAGGACTTCTCAGCTATTCAGTGAGTCTGAAGCCAATTGTGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCAGGACTTCTCAGCTATTCAGTGAGTCTGAAGCCAATTGTGGA  447

seq1  TTGGTTATATGAAGCCATGCTTTTTTTTTTTTAAAAAAGATAATCATTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATATGAAGCCATGCTTTTTTTTTTTTAAAAAAGATAATCATTCT  497

seq1  CTTTATTGTTGATGATCTTTTCCCCAAAAGAATAGCTCAGTGGATGCCGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGTTGATGATCTTTTCCCCAAAAGAATAGCTCAGTGGATGCCGA  547

seq1  GCGTGGTGGTGCACGCCTTTAATCCCAGCACTCCGGAGGCAGGGGCAGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGTGGTGCACGCCTTTAATCCCAGCACTCCGGAGGCAGGGGCAGGC  597

seq1  AGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  647

seq1  GTTCCAGGGCTACACAGAAAAACTAAAAAAGAATAGCTCAGCGGGTAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGCTACACAGAAAAACTAAAAAAGAATAGCTCAGCGGGTAAAA  697

seq1  ACATTTGCCACCAAATCTAATCTACCTGAGTTTGATCCCAGACCCTCACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGCCACCAAATCTAATCTACCTGAGTTTGATCCCAGACCCTCACT  747

seq1  CATGACCTCCACATGAATGACAGCGACTGCACAGGCACACACATGCATGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTCCACATGAATGACAGCGACTGCACAGGCACACACATGCATGC  797

seq1  ATGCAAACACATGCTGGCACAATTAAAAATATACAAAACACTAGGAGTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACACATGCTGGCACAATTAAAAATATACAAAACACTAGGAGTTA  847

seq1  TTTGTGGCATAACACCCTCTTTTTCCTGTATAAAGCCTGAAAGTGATGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCATAACACCCTCTTTTTCCTGTATAAAGCCTGAAAGTGATGTG  897

seq1  TTAAGAATTTACATAAAAAGGTTGTTCTAAATCATTATTTATACACATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTTACATAAAAAGGTTGTTCTAAATCATTATTTATACACATAT  947

seq1  TCTATTCATTATAATCTAGACACTGACAACTGTAATCATTCTTCCACGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATTATAATCTAGACACTGACAACTGTAATCATTCTTCCACGAG  997

seq1  TTTTTAAAGTTAACTGCACTAAATCAATACTAATATAACCCAAGGTTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGTTAACTGCACTAAATCAATACTAATATAACCCAAGGTTTCC  1047

seq1  TCTGAAATTTACAAAGCACAAAATGGTGAGAATTC  1081
      |||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTTACAAAGCACAAAATGGTGAGAATTC  1082