BAC Information

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BAC

Clone NameB6Ng01-318E19
Chromosome13 (Build37)5 (Build37)
Map Location 86,548,821 - 86,549,44935,019,055 - 35,019,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318E19.bB6Ng01-318E19.g
ACCGA108226GA108227
length9951,136
definitionB6Ng01-318E19.b B6Ng01-318E19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,548,821 - 86,549,449)(35,019,055 - 35,019,571)
sequence
gaattcacaaccctctgttttgattggttggtttttttgtttgtttgttt
tttgttttttgtttttttgtaatactctttgtctatggtaaaaatgtttc
attgaagatggcagtaatttttccatgtcccttttcctttgattcttgtt
acatatacatacatacattcatacattgatgcatacatgcacacatgaat
acaaagatgaattcattttcatatacatatatatcctatatatttcatat
aattttacttttatatatgttttcaaggctgataattcgttattggaaaa
gcaattgctgtgatcttccccaaggaaggctgtttctcctattcttagaa
ttccttagtttcttgtaacttttgtctaaggttaaggccttatgacttgt
tgttattgttgctttaatgatggtagtggtggaagtagttgttactctta
ctttttgttttgatttttgagacagggtttctctgtggagttctgaatgt
cctggaactcaccctgtagaccaaacttgcatcaaactcaaagagttcta
cttgcctcctaagtgtaggattaaagatatgtgccaccaccacctagcta
tgacatgtattttaaggaagaatataactgtttaataatttttctaaaaa
tattcattcatgcaatgtatttttattatatccactcttattttcgaacc
tcccatagcaacactctctgatagattcctttcacattttcatattgtct
aattttttaatttgttgttttaagtagttagttcaattagtgttgtgtac
atttagatcggaggaagaacaactactataacaagatcaacttacttaac
cagctccatttctcaaaaattattcttctcccagcagccaacacatactg
aactagggatgagccctttataattgctctatcatccatgctggaattct
gactgggctgatctcatgcaaagcttgtgcaattacaattagaaa

gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtatcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcattgttggtgggattgcaggcttgtacaaccactctggaaatca
gtctggcggttcatcagaaaattggacatagtactaccggaggatccagc
aatacctctcctgggcatttatccagaagatgccccaactggtaagaagg
acacatgctccactatgttcatagcagccttatttataatagccagaagc
tggaaataacccagatgcccctcaacagaggaatggatacagaaaatgtg
gtacatctacacaatggagtactactcagctattaaaaagaatgaattta
tgaaattcctagtcaaatggatggacctggagggcatcatcctgagtgag
gtaacacattcacaaaggaactcacacaatatgtactcactgataagtgg
atattagccccaaacctaggattcccaagatataaggtacaatttgataa
acacatgaaactcaagaagaatgaagactgaagtgtggacactatgcccc
tccttagaattgggaacaaaacacccatggaaggagttacagagacaaag
tttggagctgagatgaaaggatggaccatgtagagactgccatatccagg
gatccaccccataatcagcacccaaacgctgacaccatttgcatacccta
gcaagatttttatggaaaggacccagatgtagctatctctgtgagactat
gctggggcctagcaaacaacagaagtggatgttcacagtcagctaatggg
atggatcacaggctcccaatgagagctagagaaagaacccaaagagctat
ggattctgcacccttatagtgacacattatgactaaccagtacccgggct
ccttggactctagcttgccatattttatccaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_86548821_86549449
seq2: B6Ng01-318E19.b_43_671 (reverse)

seq1  AGTTATATTCTTCCTTAAAATACATGTCATAGCTAGGTGGTGGTGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTCTTCCTTAAAATACATGTCATAGCTAGGTGGTGGTGGCACA  50

seq1  TATCTTTAATCCTACACTTAGGAGGCAAGTAGAACTCTTTGAGTTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAATCCTACACTTAGGAGGCAAGTAGAACTCTTTGAGTTTGATG  100

seq1  CAAGTTTGGTCTACAGGGTGAGTTCCAGGACATTCAGAACTCCACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGGTCTACAGGGTGAGTTCCAGGACATTCAGAACTCCACAGAGA  150

seq1  AACCCTGTCTCAAAAATCAAAACAAAAAGTAAGAGTAACAACTACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAAAATCAAAACAAAAAGTAAGAGTAACAACTACTTCCA  200

seq1  CCACTACCATCATTAAAGCAACAATAACAACAAGTCATAAGGCCTTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACCATCATTAAAGCAACAATAACAACAAGTCATAAGGCCTTAACC  250

seq1  TTAGACAAAAGTTACAAGAAACTAAGGAATTCTAAGAATAGGAGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAAAGTTACAAGAAACTAAGGAATTCTAAGAATAGGAGAAACAG  300

seq1  CCTTCCTTGGGGAAGATCACAGCAATTGCTTTTCCAATAACGAATTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTGGGGAAGATCACAGCAATTGCTTTTCCAATAACGAATTATCA  350

seq1  GCCTTGAAAACATATATAAAAGTAAAATTATATGAAATATATAGGATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGAAAACATATATAAAAGTAAAATTATATGAAATATATAGGATATA  400

seq1  TATGTATATGAAAATGAATTCATCTTTGTATTCATGTGTGCATGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATGAAAATGAATTCATCTTTGTATTCATGTGTGCATGTATGCA  450

seq1  TCAATGTATGAATGTATGTATGTATATGTAACAAGAATCAAAGGAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTATGAATGTATGTATGTATATGTAACAAGAATCAAAGGAAAAGG  500

seq1  GACATGGAAAAATTACTGCCATCTTCAATGAAACATTTTTACCATAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAAAAATTACTGCCATCTTCAATGAAACATTTTTACCATAGACA  550

seq1  AAGAGTATTACAAAAAAACAAAAAACAAAAAACAAACAAACAAAAAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATTACAAAAAAACAAAAAACAAAAAACAAACAAACAAAAAAACC  600

seq1  AACCAATCAAAACAGAGGGTTGTGAATTC  629
      |||||||||||||||||||||||||||||
seq2  AACCAATCAAAACAGAGGGTTGTGAATTC  629


seq1: chr5_35019055_35019571
seq2: B6Ng01-318E19.g_834_1200 (reverse)

seq1  CTTTTTGGATAAAATATGACATGTATTAAAGTCTTTAATTTTTTTACAAC  50
      |||||||||||||||||| || |   || ||||   ||       |   |
seq2  CTTTTTGGATAAAATATGGCAAG--CTAGAGTC--CAA-----GGAGCCC  41

seq1  TGTTTCTCTTTTGTGTTTTTGT----TTATA----TTGAGAAAAAAAACC  92
       | | ||  || ||  |  |||     ||||    |  ||||   | | |
seq2  GGGTACTGGTTAGTCATAATGTGTCACTATAAGGGTGCAGAATCCATAGC  91

seq1  TCTTAGAAAATTGATTCAAAGAATTTAATTCTGTTTCCTGAAGCAGAACA  142
      |||| |    ||  |||      | ||  |||  ||   | |||      
seq2  TCTTTG--GGTTCTTTC------TCTAGCTCTCATT--GGGAGC------  125

seq1  TAAGTTGAGGAATTTTATTTGCCTAATCTGAACTAAAAATAACATATTTC  192
           |||   ||   ||| ||  | | |||||               ||
seq2  --CTGTGATCCATCCCATTAGCTGACTGTGAAC--------------ATC  159

seq1  CTAAAAGTTTTTATAAGTCTTAGTTTTTGTTGTTGTTGTTGGTTTTTTTT  242
      |                       || ||||||  ||| | |        
seq2  C---------------------ACTTCTGTTGT--TTGCTAG--------  178

seq1  TGTTGTTGTTGTTTTTTGTTTTTGTTTTTGTTTTGTTTTTTGTTTTTTTG  292
                             |     |  | |         | |   
seq2  -----------------------GCCCCAGCATAG---------TCTCAC  196

seq1  AGACAGGGTTTCCTCTGTGTAGCCCTGGCTGTTCTGGAACTCATTTTGTA  342
      ||| |  | | | |||| ||   |||     |||   ||   || |||  
seq2  AGAGATAGCTACATCTGGGT---CCT-----TTCCATAA-AAATCTTG--  235

seq1  GACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTCTGCCTCCTGCAT  392
        | ||| |   |          ||||      |  || || |  ||  |
seq2  --CTAGGGTATGC----------AAAT-----GGTGTCAGCGT-TTGGGT  267

seq1  GCTGGGATTAAAGGCATGCGCCACCACGCCCAGCTAAGTCTTAGTTTTTA  442
      |||  |||||  ||   |       |  ||  | || | |  ||| | ||
seq2  GCT--GATTATGGGGTGG-------ATCCCTGGATATGGC--AGTCTCTA  306

seq1  TTTCTTCTTAAAAAACAAATCCATTCTTTCGTCTTAGCTCCAAACTTTGT  492
        |                ||||| ||||| ||| |||||||||||||||
seq2  CAT--------------GGTCCATCCTTTCATCTCAGCTCCAAACTTTGT  342

seq1  CTCTGCAACTCCTTTCATGGGTATT  517
      ||||| |||||||| ||||||| ||
seq2  CTCTGTAACTCCTTCCATGGGTGTT  367


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