BAC Information

Click to search

BAC

Clone NameB6Ng01-318H04
Chromosome5 (Build37)
Map Location 45,595,995 - 45,597,110
singlet/doubletsinglet
Overlap genenone
Upstream geneTapt1, LOC100040717, LOC545747, Ldb2, LOC100041481
Downstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318H04.bB6Ng01-318H04.g
ACCGA108334GA108335
length1,124754
definitionB6Ng01-318H04.b B6Ng01-318H04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaggtgaaatggcttctttgattggagaacaaaggcagttgtc
acatgttgttctttaaaatcatcccagcaattatgatatgtatttgaaag
caagaagttttccatgtcttgtgaaggttctatgccctagtataggggaa
tgtcagggccagaaagagggagtgagtgggttggccagcaagaggagaag
ggaagtgatatggggtttctaggaagggaggggaaaccaagaaagtggat
aacatttgaaatgcaaataaagaaattatctaatagaaaaaagaaaaaag
agaagtcttccatggctaacatctcagaatcataaaagatattggactat
ctttgtttcatttattttatttatttgtagatttttatttttataaggct
ggactctgtacaactggctgagggccaagctaaaatcgctgagttatgtg
ttagcttctcttacactgttaagtaatggccatttaaagaaatggcttaa
acagcctcttctccctctttcatctcaaatggaacctcactaaagcaaga
agaaagctgggatgaagacactacaaaacaataatgaactcgatcctttt
ctgatagctgcatattaacgtagagtccaggaaaataagtcagaatgcca
atggaaattgctgttggtaaaagtattagatttatctaacatagtctagt
taaactgtgaaaattgaggagtgggatggagttttgccgtcttgcttgca
gcacttggctattttggatgtggaagcagtcaagaaaggagtgaatatgt
cagtgttcttcctcagagaactaggtgtgcaatgatgttaccatggagtc
aggaatagtgaaaaagagactaaagaggggagaactgcatgttccttagt
tccctgtcaaacttattgtggcccatgagaagggtgtcttctgagattat
tggccatgggtgtgaaatttttagctggtgggtttctcctgtttgtcaaa
atcacatgagaaactactacataggaattattcagatcacatgagtgtac
atgcaggtacattctgtattgatatcaaagaatcaattttgtgtttattg
gggtaccagtcactattctggggc

gaattcaaatcgtatgcccatacaaaggctacacacaaatgatgatagag
gttttgttgctaatttcccaaacttggaggcaaccaaggtactcccaggt
aactacacagatagactatggtgcacacagacaacaaaatattgctcagt
gctcaaaagaaatgaactgttaagacacagaaatatgtgaagagaccata
aatatgtattactgaatataagaggcagatttaaaagggagtgattccag
gtatatggctttgtgcttactttgaggacagtgaaaagatccatgatctc
aggggtcacatgggaaaggaagggtgactatgtagaaggcagaggtgttt
gtagcgaggttgtctttgttgctagagtggtgggcagaccattgcacatt
ttctcaaacccatagccacacactcaaaactgagctgtaatgcaactatg
ggtattacatgaaaatatatctgtgaatgttcataatcatagcaaatgct
ctgtgctaatagagagtggtgacaatgaaggaggagtgtgtggtggttaa
attggggtgcaggagatttgggcggatcttgccctccaatttttctgtga
attgttggttttaaaaaactagctgcatatgtatcaaaagatgacctagt
cgaccatcaatggaaaaagaggcccatttggacttgcaaactttatatgc
ccccatacagggcaacgccagggccaaaataggtgggagtgggtgggtag
ggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_45595995_45597110
seq2: B6Ng01-318H04.b_46_1169 (reverse)

seq1  GCCCCAGAATAGTGCCTGGCA-CACAATAAACACAAAATGGATTCTTTGA  49
      |||||||||||||| |||| | | ||||||||||||||| ||||||||||
seq2  GCCCCAGAATAGTGACTGGTACCCCAATAAACACAAAATTGATTCTTTGA  50

seq1  TATC-ATACAAGAATGTACCTGCATGTACACTCATTGTGATCTG-ATA--  95
      |||| |||| |||||||||||||||||||||||| ||||||||| |||  
seq2  TATCAATAC-AGAATGTACCTGCATGTACACTCA-TGTGATCTGAATAAT  98

seq1  TCCTATGTAGTAG--TCTCATGTTGATTTTGACAAACAGGAG-AACCCAC  142
      |||||||||||||  ||||||| ||||||||||||||||||| |||||||
seq2  TCCTATGTAGTAGTTTCTCATG-TGATTTTGACAAACAGGAGAAACCCAC  147

seq1  CAGCT-AAAATTTCACACCCATGGCC-ATAATCTCAGAAGACACCCTTCT  190
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGCTAAAAATTTCACACCCATGGCCAATAATCTCAGAAGACACCCTTCT  197

seq1  CAT-GGCCACAATAAGTTTGACAGGGAACTAAGGAACATGCAGTTCTCCC  239
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCACAATAAGTTTGACAGGGAACTAAGGAACATGCAGTTCTCCC  247

seq1  CTCTTTAGTCTCTTTTTCACTATTCCTGACTCCATGGTAACATCATTGCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAGTCTCTTTTTCACTATTCCTGACTCCATGGTAACATCATTGCA  297

seq1  CACCTAGTTCTCTGAGGAAGAACACCTGACATATTCACTCC-TTCTTGAC  338
      |||||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CACCTAGTTCTCTGAGGAAGAACA-CTGACATATTCACTCCTTTCTTGAC  346

seq1  TGCTTCCACATCCAAAATAGCCAAGTGCTGCAAGCAAGACGGCAAAACTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCACATCCAAAATAGCCAAGTGCTGCAAGCAAGACGGCAAAACTC  396

seq1  CATCCCACTCCTCAATTTTCACAGTTTAACTAGACTATGTTAGATAAATC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACTCCTCAATTTTCACAGTTTAACTAGACTATGTTAGATAAATC  446

seq1  TAATACTTTTACCAACAGCAATTTCCATTGGCATTCTGACTTATTTTCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTTTTACCAACAGCAATTTCCATTGGCATTCTGACTTATTTTCCT  496

seq1  GGACTCTACGTTAATATGCAGCTATCAGAAAAGGATCGAGTTCATTATTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTACGTTAATATGCAGCTATCAGAAAAGGATCGAGTTCATTATTG  546

seq1  TTTTGTAGTGTCTTCATCCCAGCTTTCTTCTTGCTTTAGTGAGGTTCCAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGTGTCTTCATCCCAGCTTTCTTCTTGCTTTAGTGAGGTTCCAT  596

seq1  TTGAGATGAAAGAGGGAGAAGAGGCTGTTTAAGCCATTTCTTTAAATGGC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATGAAAGAGGGAGAAGAGGCTGTTTAAGCCATTTCTTTAAATGGC  646

seq1  CATTACTTAACAGTGTAAGAGAAGCTAACACATAACTCAGCGATTTTAGC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTAACAGTGTAAGAGAAGCTAACACATAACTCAGCGATTTTAGC  696

seq1  TTGGCCCTCAGCCAGTTGTACAGAGTCCAGCCTTATAAAAATAAAAATCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTCAGCCAGTTGTACAGAGTCCAGCCTTATAAAAATAAAAATCT  746

seq1  ACAAATAAATAAAATAAATGAAACAAAGATAGTCCAATATCTTTTATGAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAATAAAATAAATGAAACAAAGATAGTCCAATATCTTTTATGAT  796

seq1  TCTGAGATGTTAGCCATGGAAGACTTCTCTTTTTTCTTTTTTCTATTAGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATGTTAGCCATGGAAGACTTCTCTTTTTTCTTTTTTCTATTAGA  846

seq1  TAATTTCTTTATTTGCATTTCAAATGTTATCCACTTTCTTGGTTTCCCCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTTATTTGCATTTCAAATGTTATCCACTTTCTTGGTTTCCCCT  896

seq1  CCCTTCCTAGAAACCCCATATCACTTCCCTTCTCCTCTTGCTGGCCAACC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTAGAAACCCCATATCACTTCCCTTCTCCTCTTGCTGGCCAACC  946

seq1  CACTCACTCCCTCTTTCTGGCCCTGACATTCCCCTATACTAGGGCATAGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACTCCCTCTTTCTGGCCCTGACATTCCCCTATACTAGGGCATAGA  996

seq1  ACCTTCACAAGACATGGAAAACTTCTTGCTTTCAAATACATATCATAATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAAGACATGGAAAACTTCTTGCTTTCAAATACATATCATAATT  1046

seq1  GCTGGGATGATTTTAAAGAACAACATGTGACAACTGCCTTTGTTCTCCAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATGATTTTAAAGAACAACATGTGACAACTGCCTTTGTTCTCCAA  1096

seq1  TCAAAGAAGCCATTTCACCTTGGAATTC  1116
      ||||||||||||||||||||||||||||
seq2  TCAAAGAAGCCATTTCACCTTGGAATTC  1124


| Home | SequenceCutter | Blast | Download |