BAC Information

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BAC

Clone NameB6Ng01-318K07
Chromosome5 (Build37)
Map Location 137,216,875 - 137,336,885
singlet/doubletdoublet
Overlap geneEmid2
Upstream gene2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2, Cutl1, Mylc2pl
Downstream geneLOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318K07.bB6Ng01-318K07.g
ACCGA108476GA108477
length1,090935
definitionB6Ng01-318K07.b B6Ng01-318K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,216,875 - 137,217,974)(137,335,963 - 137,336,885)
sequence
gaattcctggtcagccaagtcttcaaaacaaaaacaaaaccacgtgtctg
ttttgcagggctggggccccaacttagcccagattcagccttgatagaga
gagtaggcagccacttctttcttttaaaattttattatgcttttatttat
gtgtgtgcgcgcgcgtgtgtgcgcatgagtgcatgtgtgtgtgcacgtgc
atgcgtgtataggtgagtatatttttcctcctcatgtaagtctgtattgc
acatgtatgtggataactacagaggccaggggaggcattggctggcctgg
agctggagtttcagatggttttgtgtccagcatgggtgtcattcatggaa
cctggaagcccctgtaaaagcagacagctgtagtaactgctgagccatct
ctccagccccatcttaaaatgcagacgtattgatccctttttgtgtagca
gtgcacatctggaggccggaggacaccttgcaggagtcagttgtctcctg
tcacgggggtcctgaagattgtactcaaggtcaccaggcttggtggcaaa
tgtttttacctatggagccatctcggctactccgagcggccacttctgaa
gctaccttccctcctctacccgctttcttgggttcctctgcctcagaaac
cttaagggtaccctgaatctggacacagttgtttatcagttgtctggcat
aaattatctgggtgcagtccagcctcccccagagctgacaagccacagaa
agaccacagtggagagagcacctttatttgaaataacatcacaggtctct
gatcacctcctggtggagacagagaataactcagagagagcctacagggc
ccagtggggtcaggtcacagccttgcataagcaccaagaactttagggat
ggtcactcctgctgggcagggagacatacccgagggtggtgtttttctgt
ctctgagtgtcaggccatggcccagttataggagcaccagatggggggag
ggcgtcataagagactagcaccagtcagagaagcttcaagctgtggggca
gtcttctgtgtactggccttgaaccagcctcaagggtgtg
gaattcagggcctgtgtattctaagtggtctgcctagactgcgaccccgt
cctccccccctcccaatgaaggtctaaggcagcgcttctcaacctgtggg
tcagatgaccctttcacagggggtcaccgaagaccattctgcatatctga
tatttacaaaattacagttatgaggtagcaacaaaataattttatggtta
ggagtcacttgcctagaatgtttcagtgagggagggggctgggggcgtgg
ctcagtggtagagcccctgcctagaatctcccagggagaggctgggggcg
tggctcaactgtaaaacatttgttaagaatttgccagtgatggcacatgc
ctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcca
ggccagcctgatctacaaagtgagtttcaggacagccagggctacacaga
gaaaccctatttcgaaaaaccaaataaataaataaataaatccaaataaa
tccaaataaataaataaataaataaataaataaaagaatatgccaatgat
ggattgcggacatggctttactgttacgaaatatagaattccatgttcag
tgagagaccctttcttgaaaaataatgtggaaagtgagaggtagacattt
ttgaaatcaatcattggtctctatacactcacacaggggagggcacccac
atacacctacatattttactgtcccttctccaattaagaaaaaagccaca
tgagttattcaccctctctgtgtcctgaaagcagctcagttaccctccct
gactgttatcactccccaagagtggcttcagcatgctcagagggacttcc
attagggagctgtgtgggactttcttgatccaggaaccctttgttgatcc
agatggacaacccaagtagggggagtaaggtatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137216875_137217974
seq2: B6Ng01-318K07.b_46_1135

seq1  GAATTCCTGGTCAGCCAAGTCTTCAAAACAAAAACAAAACCACGTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCAGCCAAGTCTTCAAAACAAAAACAAAACCACGTGTCTG  50

seq1  TTTTGCAGGGCTGGGGCCCCAACTTAGCCCAGATTCAGCCTTGATAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGGGCTGGGGCCCCAACTTAGCCCAGATTCAGCCTTGATAGAGA  100

seq1  GAGTAGGCAGCCACTTCTTTCTTTTAAAATTTTATTATGCTTTTATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGCAGCCACTTCTTTCTTTTAAAATTTTATTATGCTTTTATTTAT  150

seq1  GTGTGTGCGCGCGCGTGTGTGCGCATGAGTGCATGTGTGTGTGCACGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCGCGCGCGTGTGTGCGCATGAGTGCATGTGTGTGTGCACGTGC  200

seq1  ATGCGTGTATAGGTGAGTATATTTTTCCTCCTCATGTAAGTCTGTATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTATAGGTGAGTATATTTTTCCTCCTCATGTAAGTCTGTATTGC  250

seq1  ACATGTATGTGGATAACTACAGAGGCCAGGGGAGGCATTGGCTGGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTGGATAACTACAGAGGCCAGGGGAGGCATTGGCTGGCCTGG  300

seq1  AGCTGGAGTTTCAGATGGTTTTGTGTCCAGCATGGGTGTCATTCATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGTTTCAGATGGTTTTGTGTCCAGCATGGGTGTCATTCATGGAA  350

seq1  CCTGGAAGCCCCTGTAAAAGCAGACAGCTGTAGTAACTGCTGAGCCATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGCCCCTGTAAAAGCAGACAGCTGTAGTAACTGCTGAGCCATCT  400

seq1  CTCCAGCCCCATCTTAAAATGCAGACGTATTGATCCCTTTTTGTGTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCCATCTTAAAATGCAGACGTATTGATCCCTTTTTGTGTAGCA  450

seq1  GTGCACATCTGGAGGCCGGAGGACACCTTGCAGGAGTCAGTTGTCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATCTGGAGGCCGGAGGACACCTTGCAGGAGTCAGTTGTCTCCTG  500

seq1  TCACGGGGGTCCTGAAGATTGTACTCAAGGTCACCAGGCTTGGTGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGGGTCCTGAAGATTGTACTCAAGGTCACCAGGCTTGGTGGCAAA  550

seq1  TGTTTTTACCTATGGAGCCATCTCGGCTACTCCGAGCGGCCACTTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTACCTATGGAGCCATCTCGGCTACTCCGAGCGGCCACTTCTGAA  600

seq1  GCTACCTTCCCTCCTCTACCCGCTTTCTTGGGTTCCTCTGCCTCAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTCCCTCCTCTACCCGCTTTCTTGGGTTCCTCTGCCTCAGAAAC  650

seq1  CTTAAGGGTACCCTGAATCTGGACACAGTTGTTTATCAGTTGTCTGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGGTACCCTGAATCTGGACACAGTTGTTTATCAGTTGTCTGGCAT  700

seq1  AAATTATCTGGGTGCAGTCCAGCCTCCCCCAGAGCTGACAAGCCACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTGGGTGCAGTCCAGCCTCCCCCAGAGCTGACAAGCCACAGAA  750

seq1  AGACCACAGTGGAGAGAGCACCTTTATTTGAAATAACATCACAGGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAGTGGAGAGAGCACCTTTATTTGAAATAACATCACAGGTCTCT  800

seq1  GATCACCTCCTGGTGGAGACAGAGAATAACTCAGAGAGAGCCTACAGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTCCTGGTGGAGACAGAGAATAACTCAGAGAGAGCCTACAGGGC  850

seq1  CCAGTGGGGTCAGGTCACAGCCTTGCATAAGCACCAAGAACTTTAGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGGTCAGGTCACAGCCTTGCATAAGCACCAAGAACTTTAGGGAT  900

seq1  GGTCACTCCTGCTGGGCAGGGAGACATACCCGAGGGTGGTG-TTTTCTGT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GGTCACTCCTGCTGGGCAGGGAGACATACCCGAGGGTGGTGTTTTTCTG-  949

seq1  TCTCTGAGTGTCAGGGCCATTGGCCCAGTTATAGGAGCACCAGGATGGGG  999
      ||||||||||||| ||||| |||||||||||||||||||||| |||||||
seq2  TCTCTGAGTGTCA-GGCCA-TGGCCCAGTTATAGGAGCACCA-GATGGGG  996

seq1  GGAGGGCGTCATAAGAGACCAAGCACCAGCCAGAGAAGCCTTCAGGGCTG  1049
      |||||||||||||||||| | |||||||| |||||||| |||||  ||||
seq2  GGAGGGCGTCATAAGAGA-CTAGCACCAGTCAGAGAAG-CTTCA-AGCTG  1043

seq1  TGGGGCAGTTCTTCTGTGTAACCTGCCTGGACCCCAGCCTCAAGGTGTGT  1099
      |||||||| |||||||||| ||  |||| ||  |||||||||||| ||||
seq2  TGGGGCAG-TCTTCTGTGT-ACTGGCCTTGA-ACCAGCCTCAAGG-GTGT  1089

seq1  G  1100
      |
seq2  G  1090

seq1: chr5_137335963_137336885
seq2: B6Ng01-318K07.g_67_1001 (reverse)

seq1  AGATACC-TACT-CCCCTACTTGGTTTGT-CAACT-GATCAAC-AAGGGT  45
      ||||||| |||| ||||||||||| |||| || || ||||||| ||||||
seq2  AGATACCTTACTCCCCCTACTTGGGTTGTCCATCTGGATCAACAAAGGGT  50

seq1  TCCTGGATCAAGAAAGT-CCACACAGCTCCCT-ATGG-AGTCCCTCTGAG  92
      ||||||||||||||||| |||||||||||||| |||| ||||||||||||
seq2  TCCTGGATCAAGAAAGTCCCACACAGCTCCCTAATGGAAGTCCCTCTGAG  100

seq1  CATGCTGAAGCCACTC-TGGGGAGTGATAACAGTCAGGGA-GGTAACTGA  140
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  CATGCTGAAGCCACTCTTGGGGAGTGATAACAGTCAGGGAGGGTAACTGA  150

seq1  GCTGCTTTCAGGACACAGAGAGGGTGAATAACTCATGTGGCTTTTTTCTT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCAGGACACAGAGAGGGTGAATAACTCATGTGGCTTTTTTCTT  200

seq1  AATTGGAGAAGGGACAGT-AAATATGTAGGTGTATGTGGGTGCCCTCCCC  239
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTGGAGAAGGGACAGTAAAATATGTAGGTGTATGTGGGTGCCCTCCCC  250

seq1  TGTGTGAGTGTATAGAGACCAATGATTGATTTC-AAAATGTCTACCTCTC  288
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTGTGAGTGTATAGAGACCAATGATTGATTTCAAAAATGTCTACCTCTC  300

seq1  ACTTTCCACATTATTTTTCAAGAAAGGGTCTCTCACTGAACATGGAATTC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCACATTATTTTTCAAGAAAGGGTCTCTCACTGAACATGGAATTC  350

seq1  TATATTTCGTAACAGTAAAGCCATGTCCGCAATCCATCATTGGCATATTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCGTAACAGTAAAGCCATGTCCGCAATCCATCATTGGCATATTC  400

seq1  TTTTATTTATTTATTTATTTATTTATTTATTTGGATTTATTTGGATTTAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTTATTTATTTATTTATTTATTTGGATTTATTTGGATTTAT  450

seq1  TTATTTATTTATTTGGTTTTTCGAAATAGGGTTTCTCTGTGTAGCCCTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTGGTTTTTCGAAATAGGGTTTCTCTGTGTAGCCCTGG  500

seq1  CTGTCCTGAAACTCACTTTGTAGATCAGGCTGGCCTGGAACTCAGAAATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGAAACTCACTTTGTAGATCAGGCTGGCCTGGAACTCAGAAATC  550

seq1  CGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCATCACT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCATCACT  600

seq1  GGCAAATTCTTAACAAATGTTTTACAGTTGAGCCACGCCCCCAGCCTCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTCTTAACAAATGTTTTACAGTTGAGCCACGCCCCCAGCCTCTC  650

seq1  CCTGGGAGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGATTCTAGGCAGGGGCTCTACCACTGAGCCACGCCCCCAGCCC  700

seq1  CCTCCCTCACTGAAACATTCTAGGCAAGTGACTCCTAACCATAAAATTAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCACTGAAACATTCTAGGCAAGTGACTCCTAACCATAAAATTAT  750

seq1  TTTGTTGCTACCTCATAACTGTAATTTTGTAAATATCAGATATGCAGAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTACCTCATAACTGTAATTTTGTAAATATCAGATATGCAGAAT  800

seq1  GGTCTTCGGTGACCCCCTGTGAAAGGGTCATCTGACCCACAGGTTGAGAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCGGTGACCCCCTGTGAAAGGGTCATCTGACCCACAGGTTGAGAA  850

seq1  GCGCTGCCTTAGACCTTCATTGGGAGGGGGGGAGGACGGGGTCGCAGTCT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGCCTTAGACCTTCATTGGGAGGGGGGGAGGACGGGGTCGCAGTCT  900

seq1  AGGCAGACCACTTAGAATACACAGGCCCTGAATTC  923
      |||||||||||||||||||||||||||||||||||
seq2  AGGCAGACCACTTAGAATACACAGGCCCTGAATTC  935