BAC Information

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BAC

Clone NameB6Ng01-318M10
Chromosome2 (Build37)5 (Build37)
Map Location 54,068,646 - 54,069,45683,857,001 - 83,857,138
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArl6ip6, LOC666872, LOC666876, LOC207933, Rprm
Downstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M10.bB6Ng01-318M10.g
ACCGA108577GA108578
length954256
definitionB6Ng01-318M10.b B6Ng01-318M10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,068,646 - 54,069,456)(83,857,001 - 83,857,138)
sequence
gaattcttgggtttctgagttcacttggatagaaaaagaagactttgaag
accagaaaaatatcagtgcaaaatcaattctaaaatattaagcctgtagg
cccacctcagaacataagaggcagaacttctccctgggtctgtgctcttt
tctccctattatgtttctccatagacttggtcttcacactctgtgacatt
cattttctttcctctccttgctaaaaattgaagaggcacacattcctgag
tgaccctacttgttccaaatcaatcacaaatttccagatcccacataaaa
attttatttcggagtcttctactagcagccttcagataaagaactctcag
ctctgcctacaccatgcctgcctggatgctgtcatgttcccgctttgatg
atattggactgaacctctgaacctgtaagccagccccagttaaatgttgt
ccttatgagagttgccttggtcatggtgtctgctcacatcagtaaaaccc
tgactaagacagaagttggtaccagggattgcagtatttctgtgatagac
ctgaccatgcttttatttgcaggaatgcggatttggggactctggaaagc
agtggaatgctttatgttgggttgggcttcctaggctatcttagtaggaa
tatttccatttttccatataaccttttttactgagtgtgatttgaactgt
acagtcctggcccaagaggtttcagtggagaagaatttcagaatgtggcc
tagagactgttttgtggtattttggtgaagaatatggctgctttttgccc
ttgactgaagaatctacatgagtctaaggtaaagagatttatattaattg
cattgaacaaggatgtctcaaaaagctttgttctctggataagtctcatg
aagagcattttgggacaagcatagcaagcctagaaaggaaaaatataaat
atat

aatacagggagaatccctttagctgcctcaatagttgtgcactagaaatc
agggacagagttagttaatttatcccatctaatgaattgacatctgttga
aaaactgtatatgcctcagtacaggggaacgccagggccaagaagtggga
gtggggggataggggagtagcaggggagggtctgggggacttttgggcta
ccgtttgtatgaaaatgaagaaaatccctaattaaaaaaataaattaaaa
aaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_54068646_54069456
seq2: B6Ng01-318M10.b_48_858

seq1  GAATTCTTGGGTTTCTGAGTTCACTTGGATAGAAAAAGAAGACTTTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGTTTCTGAGTTCACTTGGATAGAAAAAGAAGACTTTGAAG  50

seq1  ACCAGAAAAATATCAGTGCAAAATCAATTCTAAAATATTAAGCCTGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAAATATCAGTGCAAAATCAATTCTAAAATATTAAGCCTGTAGG  100

seq1  CCCACCTCAGAACATAAGAGGCAGAACTTCTCCCTGGGTCTGTGCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAGAACATAAGAGGCAGAACTTCTCCCTGGGTCTGTGCTCTTT  150

seq1  TCTCCCTATTATGTTTCTCCATAGACTTGGTCTTCACACTCTGTGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATTATGTTTCTCCATAGACTTGGTCTTCACACTCTGTGACATT  200

seq1  CATTTTCTTTCCTCTCCTTGCTAAAAATTGAAGAGGCACACATTCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTCCTCTCCTTGCTAAAAATTGAAGAGGCACACATTCCTGAG  250

seq1  TGACCCTACTTGTTCCAAATCAATCACAAATTTCCAGATCCCACATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTACTTGTTCCAAATCAATCACAAATTTCCAGATCCCACATAAAA  300

seq1  ATTTTATTTCGGAGTCTTCTACTAGCAGCCTTCAGATAAAGAACTCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTCGGAGTCTTCTACTAGCAGCCTTCAGATAAAGAACTCTCAG  350

seq1  CTCTGCCTACACCATGCCTGCCTGGATGCTGTCATGTTCCCGCTTTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTACACCATGCCTGCCTGGATGCTGTCATGTTCCCGCTTTGATG  400

seq1  ATATTGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAGTTAAATGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAGTTAAATGTTGT  450

seq1  CCTTATGAGAGTTGCCTTGGTCATGGTGTCTGCTCACATCAGTAAAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGAGAGTTGCCTTGGTCATGGTGTCTGCTCACATCAGTAAAACCC  500

seq1  TGACTAAGACAGAAGTTGGTACCAGGGATTGCAGTATTTCTGTGATAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGACAGAAGTTGGTACCAGGGATTGCAGTATTTCTGTGATAGAC  550

seq1  CTGACCATGCTTTTATTTGCAGGAATGCGGATTTGGGGACTCTGGAAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGCTTTTATTTGCAGGAATGCGGATTTGGGGACTCTGGAAAGC  600

seq1  AGTGGAATGCTTTATGTTGGGTTGGGCTTCCTAGGCTATCTTAGTAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATGCTTTATGTTGGGTTGGGCTTCCTAGGCTATCTTAGTAGGAA  650

seq1  TATTTCCATTTTTCCATATAACCTTTTTTACTGAGTGTGATTTGAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATTTTTCCATATAACCTTTTTTACTGAGTGTGATTTGAACTGT  700

seq1  ACAGTCCTGGCCCAAGAGGTTTCAGTGGAGAAGAATTTCAGAATGTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTGGCCCAAGAGGTTTCAGTGGAGAAGAATTTCAGAATGTGGCC  750

seq1  TAGAGACTGTTTTGTGGTATTTTGGTGAAGAATATGGCTGCTTTTTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGTTTTGTGGTATTTTGGTGAAGAATATGGCTGCTTTTTGCCC  800

seq1  TTGACTGAAGA  811
      |||||||||||
seq2  TTGACTGAAGA  811


seq1: chr5_83857001_83857138
seq2: B6Ng01-318M10.g_181_325 (reverse)

seq1  AAATTTTTTTAATTTAGTTTTTTTTTAATTAGGTATTCATTTCATTTACA  50
      ||||||||||||||||   |||||||||||||| |||   ||||||| ||
seq2  AAATTTTTTTAATTTA---TTTTTTTAATTAGGGATTTTCTTCATTTTCA  47

seq1  TTTCCAATGCTATCCCAAAAGTCCCCCA-------CCC----ACTCCCCC  89
       | | || | || |||||||||||||||       |||    ||||||| 
seq2  -TACAAACGGTAGCCCAAAAGTCCCCCAGACCCTCCCCTGCTACTCCCCT  96

seq1  ACCCACCCACTCCCACTTCTTGGCCCTGGCTTTCCCCTGTACTGAGGCA  138
      | || ||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCCCCCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCA  145


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