BAC Information

Click to search

BAC

Clone NameB6Ng01-318O16
Chromosome5 (Build37)
Map Location 18,279,229 - 18,279,829
singlet/doubletsinglet
Overlap genenone
Upstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318O16.bB6Ng01-318O16.g
ACCGA108685GA108686
length1,155843
definitionB6Ng01-318O16.b B6Ng01-318O16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggagttatttgatt
ttctggagtctaccttcttgagttctttatatatattggatattagtccc
ctatctgatttagggtaggtaaggatcctttctcaatgtgttggtggcct
ttttatcttattgatgatgtcttttgcttaacagatgctttgaaatttta
tgaggtctcatttatccattcttgatcttacagcgcaagctattgctgtt
ctattcaggaattttccccctgtgcccatatctttgaggcttttccccac
tttctcctctataagtttcactgtctctggttttatgtggggttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcac
attcttctacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagatcccttgtcgaagatcaagt
gaccatagctgtgtgggttcatttctgggtcttcaattctattgccttgg
tctacttgtctgtcgctataccagtaccatgccgtttttatcacaattgc
tctgtagtaaagctttaggtcaggcagggtgattccaccagaggttcttt
catccttgagaagagtttttgctatccaattttttttgttaatccagatg
aatttgcagattgctctttctaattcgttgaagaattgagctagaatttt
gatggggattgcattgaatctgtagattgctttgggtaagatagccattt
ttactctattgatcctgccaatcatttagcatgggatatctttccatctt
ctgagaacttctttaatttatttcttcagagacttgaagttcttatcata
cagatctttcacttccctttgttagagtcacaccaagatatttatatatt
tgtgactatgagaaaggtgttgtctccctatttcttctcagcctgttatc
ttgtgtgagaaggtcattgatcgttgagtaattttatatccagcctattt
cactggagtgtttatcagttagggagttctcctggttgggaatttaaggc
actaatatacatccaattcaatgccaaagggattatgttggaacgttcgt
ctcta
gaattctctggttatatttttaccctattttatagttattactcagctgt
taaaaaatcattaatgtgtaggtaaatgaatggaactagaaaaatatcct
gattggggtaaccagactgataaagacaaacccaagagcccaattgtatc
agagaggtttcatccagaaactgatagaagcagatgcagagacccatagc
caaatagtaggcagaccttggggtatctgcctgaaggtgaggaaggatta
taggagcaagagtagtcaaggaaactacaaaaccataaaataatcagcta
acctgtactcataggggcccacagagatgaactgataatcacagaaccta
cgtggatctgatctatctctgtgcagataattggttttttagtgaggctc
ctaacagtgggaacaaggggctgtacctgacttctttgcttattttgggg
atctttttacgtctgctgggtttcctcatccaattttaatctgaggggag
tttcctagtcttactgcaacttgatatgccatgtttgtttgatatccatg
ggagacctgcaattttctgaagagaaatgaagatgacataaatggagggg
aagcagggggagggacttggaagggattggggagagtaacctatggttga
gatataatatatgagagaataagtaaaacaacaaaaaacataacaaaaat
aatgatacactgaaggaatactcttgccagaaatttaagcaagttttgtt
gatgcaacatccttcatatttaaattccttgtttatttaaaaaatttcat
gtagaaacctgtgttagtctctaattataataaacaaaaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18279229_18279829
seq2: B6Ng01-318O16.g_310_911 (reverse)

seq1  AATTTTTTGTTATATATATTTAGAGACTAACACAGGCTTTCTACATGAAA  50
      | |||||||||   |||| ||||||||||||||||| |||||||||||||
seq2  ATTTTTTTGTTTATTATAATTAGAGACTAACACAGG-TTTCTACATGAAA  49

seq1  -TTTTTAAATAAACAAGGAAATTTAAATATGAAGGATGTTGCATCAACAA  99
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTTTAAATAAACAAGG-AATTTAAATATGAAGGATGTTGCATCAACAA  98

seq1  AACTTGCTTAAA-TTCTGGC-AGAGTATTCCTTCAGTGTATCATTATTTT  147
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  AACTTGCTTAAATTTCTGGCAAGAGTATTCCTTCAGTGTATCATTATTTT  148

seq1  TGTTATGTTTTTTGTTGTTTTACTTATTCTCTCATATATTATATCTCAAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGTTTTTTGTTGTTTTACTTATTCTCTCATATATTATATCTCAAC  198

seq1  CATAGGTTACTCTCCCCAATCCCTTCCAAGTCCCTCCCCCTGCTTCCCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTTACTCTCCCCAATCCCTTCCAAGTCCCTCCCCCTGCTTCCCCT  248

seq1  CCATTTATGTCATCTTCATTTCTCTTCAGAAAATTGCAGGTCTCCCATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATGTCATCTTCATTTCTCTTCAGAAAATTGCAGGTCTCCCATGG  298

seq1  ATATCAAACAAACATGGCATATCAAGTTGCAGTAAGACTAGGAAACTCCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACAAACATGGCATATCAAGTTGCAGTAAGACTAGGAAACTCCC  348

seq1  CTCAGATTAAAATTGGATGAGGAAACCCAGCAGACGTAAAAAGATCCCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTAAAATTGGATGAGGAAACCCAGCAGACGTAAAAAGATCCCCA  398

seq1  AAATAAGCAAAGAAGTCAGGTACAGCCCCTTGTTCCCACTGTTAGGAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCAAAGAAGTCAGGTACAGCCCCTTGTTCCCACTGTTAGGAGCC  448

seq1  TCACTAAAAAACCAATTATCTGCACAGAGATAGATCAGATCCACGTAGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAAAAACCAATTATCTGCACAGAGATAGATCAGATCCACGTAGGT  498

seq1  TCTGTGATTATCAGTTCATCTCTGTGGGCCCCTATGAGTACAGGTTAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATTATCAGTTCATCTCTGTGGGCCCCTATGAGTACAGGTTAGCT  548

seq1  GATTATTTTATGGTTTTGTAGTTTCCTTGACTACTCTTGCTCCTATAATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTATGGTTTTGTAGTTTCCTTGACTACTCTTGCTCCTATAATC  598

seq1  CTTC  601
      ||||
seq2  CTTC  602