BAC Information

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BAC

Clone NameB6Ng01-318P07
Chromosome5 (Build37)
Map Location 84,727,041 - 84,822,472
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318P07.bB6Ng01-318P07.g
ACCGA108713GA108714
length1,1211,028
definitionB6Ng01-318P07.b B6Ng01-318P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,727,041 - 84,728,152)(84,821,439 - 84,822,472)
sequence
gaattcactccaagagactttttcaaaattcttctctcagtaaccaactt
tctttctgggtgaattgtgacccatttgctaaatggatcaaagttaattg
aactttagtgcactaaatcctatcattatgcaatcttgtaagaagagcgt
tttaacttcagtacctaatatattcagaccaatttcacagaaacagcact
tttaaagccgttataaagtatgtaatttttaaacttctgattctatacaa
gaaagacactaagaagcttataattataaagaaaagacatatcagtgtct
tcccagcaataagtgattctaaatataataagtgatttctaatattgcct
taagtaattttcactttgtatggtttcaatttactttattagatcttagt
gcttttttggacatgtctgtttccaaaaatgtaagattatcgtgatttca
taactaatgcttctaataaactatgctttgattcaattttctgtatatat
atatgtatacatatatatatatatatacagagtgaaatacgatccgtcaa
agaccacagtaacctggaaagtgaagcaagtgctaagagtttgctgactc
ccatagaaatgcatagtatacatatattttagacacatatacagctgaaa
agactgacttgtagtagaaatgtatctgggacagaatacaagtaaaatat
aaatttaaatccaaaattgtcttcaatttaatagtctctaatacattata
aacatatttttctgttccacagtagcctagctaagacatattttgcataa
tattttcatcattatgcttttaaattttacaaagttagaaacattgtaat
gtttcatttagccaattctttggttataagcttactttctccgtttcttt
caaaatgtcccttcaaacttgtctttcatgatgccaagatcctttgcatt
acaaagagacctctgtggggggcccctccatttacacaggggagtatggg
taatttaagagctctccacctctatttttcctcatgactgtaagtgcaaa
catgggggtctcccttcttttcttgttagcgattccattcatgcaacaaa
gaatattcaggtgtacatgtc

gaattccaggaacaaacattagtgcttattatctatcactaagacctcat
gtactgtgacatgttcttttactccttgtttccatgatacaattgtgatc
agaacactggtgttctcattgaacgttttgaagaatttctaagatgagta
tataaaagagtatatatttctcaaactattgcataaaatacaaactgaag
gaacactacctaacttattctatgaagccacaattactctgatacctaag
ccacgttaggacccaaccaaaaaacagaacttcagaaaaatctcacttat
gaatattgatgcaaaaatacccaatatataagttatataattgcacagct
ctcccatgattcagtaaatacattgtttgcttattttatttttatattga
tgagaagcttataattagaaaaaaataaactctcttgcattcattatcca
tgagattttgcattgctatgggtttctgtctttaaggcaaatacatcaga
aatctatgtaatattcctcaacctgtagcataactttttacccaatttac
aaatgtaattttccaatgagaaatatatgtttcttaactctttactcatg
actggtagctgctcactgtcccctgaagcagttgacaaactataaagtca
agccttgaaaccagaaaacgtatatgggctgactggattcatggagagag
ggcaggacagctgtgtctttgtggtttgctcccacaaattagtttaaata
ttgactttttttcaaacattcatatatcagtagagatctaactggtatta
taaatgtttgctaatttgagcatcatgaaaggaaagtaacagtagcagag
tacgaatatacccttcttacactggattcccttgttgtcctcaggattat
atattttttttcacatatgtgatgtgacatatcaaagatcctattgacta
ttaaatgactgaaaatatatttattcctgtgtgcttttccctcattagtg
cagtgcaattttttgtgtctatgactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84727041_84728152
seq2: B6Ng01-318P07.b_49_1169

seq1  GAATTCACTCCAAGAGACTTTTTCAAAATTCTTCTCTCAGTAACCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCAAGAGACTTTTTCAAAATTCTTCTCTCAGTAACCAACTT  50

seq1  TCTTTCTGGGTGAATTGTGACCCATTTGCTAAATGGATCAAAGTTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGGTGAATTGTGACCCATTTGCTAAATGGATCAAAGTTAATTG  100

seq1  AACTTTAGTGCACTAAATCCTATCATTATGCAATCTTGTAAGAAGAGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGTGCACTAAATCCTATCATTATGCAATCTTGTAAGAAGAGCGT  150

seq1  TTTAACTTCAGTACCTAATATATTCAGACCAATTTCACAGAAACAGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCAGTACCTAATATATTCAGACCAATTTCACAGAAACAGCACT  200

seq1  TTTAAAGCCGTTATAAAGTATGTAATTTTTAAACTTCTGATTCTATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCGTTATAAAGTATGTAATTTTTAAACTTCTGATTCTATACAA  250

seq1  GAAAGACACTAAGAAGCTTATAATTATAAAGAAAAGACATATCAGTGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACACTAAGAAGCTTATAATTATAAAGAAAAGACATATCAGTGTCT  300

seq1  TCCCAGCAATAAGTGATTCTAAATATAATAAGTGATTTCTAATATTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCAATAAGTGATTCTAAATATAATAAGTGATTTCTAATATTGCCT  350

seq1  TAAGTAATTTTCACTTTGTATGGTTTCAATTTACTTTATTAGATCTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAATTTTCACTTTGTATGGTTTCAATTTACTTTATTAGATCTTAGT  400

seq1  GCTTTTTTGGACATGTCTGTTTCCAAAAATGTAAGATTATCGTGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTGGACATGTCTGTTTCCAAAAATGTAAGATTATCGTGATTTCA  450

seq1  TAACTAATGCTTCTAATAAACTATGCTTTGATTCAATTTTCTGTATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATGCTTCTAATAAACTATGCTTTGATTCAATTTTCTGTATATAT  500

seq1  ATATGTATACATATATATATATATATACAGAGTGAAATACGATCCGTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATACATATATATATATATATACAGAGTGAAATACGATCCGTCAA  550

seq1  AGACCACAGTAACCTGGAAAGTGAAGCAAGTGCTAAGAGTTTGCTGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACAGTAACCTGGAAAGTGAAGCAAGTGCTAAGAGTTTGCTGACTC  600

seq1  CCATAGAAATGCATAGTATACATATATTTTAGACACATATACAGCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAATGCATAGTATACATATATTTTAGACACATATACAGCTGAAA  650

seq1  AGACTGACTTGTAGTAGAAATGTATCTGGGACAGAATACAAGTAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACTTGTAGTAGAAATGTATCTGGGACAGAATACAAGTAAAATAT  700

seq1  AAATTTAAATCCAAAATTGTCTTCAATTTAATAGTCTCTAATACATTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATCCAAAATTGTCTTCAATTTAATAGTCTCTAATACATTATA  750

seq1  AACATATTTTTCTGTTCCACAGTAGCCTAGCTAAGACATATTTTGCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTTTTCTGTTCCACAGTAGCCTAGCTAAGACATATTTTGCATAA  800

seq1  TATTTTCATCATTATGCTTTTAAATTTTACAAAGTTAGAAACATTGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATCATTATGCTTTTAAATTTTACAAAGTTAGAAACATTGTAAT  850

seq1  GTTTCATTTAGCCAATTCTTTGGTTATAAGCTTACTTTCTCCGTTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTTAGCCAATTCTTTGGTTATAAGCTTACTTTCTCCGTTTCTTT  900

seq1  CAAAATGTCCCTTCAAACTTGTCTTTCATGATGCCAAGATCCTTTGCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTCCCTTCAAACTTGTCTTTCATGATGCCAAGATCCTTTGCATT  950

seq1  ACAAAGAGACCTCTGTGGGGG--CCCTCCATTTACAACAGGGGAGTAT-G  997
      |||||||||||||||||||||  |||||||||||| |||||||||||| |
seq2  ACAAAGAGACCTCTGTGGGGGGCCCCTCCATTTAC-ACAGGGGAGTATGG  999

seq1  GTAA-TTAAGAGCTCTCCACCTCTATTTT--CTCATGACTGTAAGGTGCA  1044
      |||| ||||||||||||||||||||||||  ||||||||||||| |||| 
seq2  GTAATTTAAGAGCTCTCCACCTCTATTTTTCCTCATGACTGTAA-GTGC-  1047

seq1  AAACAATGGGGTCTCC--TCTTT--CTGTTAGCGATTCCATTCATGCAAC  1090
      |||||  |||||||||  |||||   ||||||||||||||||||||||||
seq2  AAACATGGGGGTCTCCCTTCTTTTCTTGTTAGCGATTCCATTCATGCAAC  1097

seq1  AAAG-ATATTCA-GTGTACATGTC  1112
      |||| ||||||| |||||||||||
seq2  AAAGAATATTCAGGTGTACATGTC  1121


seq1: chr5_84821439_84822472
seq2: B6Ng01-318P07.g_67_1094 (reverse)

seq1  TGAGTCATTAAGACCACAAAAAA-TGCACTGCACTATTGAGGGAAAAAGC  49
      ||||||||  ||| ||||||||| |||||||||||| |||||| ||||||
seq2  TGAGTCAT--AGA-CACAAAAAATTGCACTGCACTAATGAGGG-AAAAGC  46

seq1  ACACAAGAATAAATATATTTTCAGTCATTTAATAGTCAATAGGATCTTTG  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAATAAATATATTTTCAGTCATTTAATAGTCAATAGGATCTTTG  96

seq1  ATATTGTCACCATCCACATATGGTGAAAAAAATATATAATCCTTGAGGAC  149
      ||| ||||| ||| ||||||||   ||||||||||||||||| |||||||
seq2  ATA-TGTCA-CAT-CACATATGTGAAAAAAAATATATAATCC-TGAGGAC  142

seq1  AACAAGGGAATCCAGTGTAAGAA-GGTATATTCGTACTCTGCTACTGTTA  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAAGGGAATCCAGTGTAAGAAGGGTATATTCGTACTCTGCTACTGTTA  192

seq1  CTTTCCTTTCATGATGCTCAAATTAGCAAACATTTATAATACCAGTTAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTCATGATGCTCAAATTAGCAAACATTTATAATACCAGTTAGA  242

seq1  TCTCTACTGATATATGAATGTTTGAAAAAAAGTCAATATTTAAACTAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTGATATATGAATGTTTGAAAAAAAGTCAATATTTAAACTAATT  292

seq1  TGTGGGAGCAAACCACAAAGACACAGCTGTCCTGCCCTCTCTCCATGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGCAAACCACAAAGACACAGCTGTCCTGCCCTCTCTCCATGAAT  342

seq1  CCAGTCAGCCCATATACGTTTTCTGGTTTCAAGGCTTGACTTTATAGTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGCCCATATACGTTTTCTGGTTTCAAGGCTTGACTTTATAGTTT  392

seq1  GTCAACTGCTTCAGGGGACAGTGAGCAGCTACCAGTCATGAGTAAAGAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGCTTCAGGGGACAGTGAGCAGCTACCAGTCATGAGTAAAGAGT  442

seq1  TAAGAAACATATATTTCTCATTGGAAAATTACATTTGTAAATTGGGTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAACATATATTTCTCATTGGAAAATTACATTTGTAAATTGGGTAAA  492

seq1  AAGTTATGCTACAGGTTGAGGAATATTACATAGATTTCTGATGTATTTGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCTACAGGTTGAGGAATATTACATAGATTTCTGATGTATTTGC  542

seq1  CTTAAAGACAGAAACCCATAGCAATGCAAAATCTCATGGATAATGAATGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGACAGAAACCCATAGCAATGCAAAATCTCATGGATAATGAATGC  592

seq1  AAGAGAGTTTATTTTTTTCTAATTATAAGCTTCTCATCAATATAAAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTTTATTTTTTTCTAATTATAAGCTTCTCATCAATATAAAAATA  642

seq1  AAATAAGCAAACAATGTATTTACTGAATCATGGGAGAGCTGTGCAATTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCAAACAATGTATTTACTGAATCATGGGAGAGCTGTGCAATTAT  692

seq1  ATAACTTATATATTGGGTATTTTTGCATCAATATTCATAAGTGAGATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATATATTGGGTATTTTTGCATCAATATTCATAAGTGAGATTTT  742

seq1  TCTGAAGTTCTGTTTTTTGGTTGGGTCCTAACGTGGCTTAGGTATCAGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTTCTGTTTTTTGGTTGGGTCCTAACGTGGCTTAGGTATCAGAG  792

seq1  TAATTGTGGCTTCATAGAATAAGTTAGGTAGTGTTCCTTCAGTTTGTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGGCTTCATAGAATAAGTTAGGTAGTGTTCCTTCAGTTTGTATT  842

seq1  TTATGCAATAGTTTGAGAAATATATACTCTTTTATATACTCATCTTAGAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAATAGTTTGAGAAATATATACTCTTTTATATACTCATCTTAGAA  892

seq1  ATTCTTCAAAACGTTCAATGAGAACACCAGTGTTCTGATCACAATTGTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAAAACGTTCAATGAGAACACCAGTGTTCTGATCACAATTGTAT  942

seq1  CATGGAAACAAGGAGTAAAAGAACATGTCACAGTACATGAGGTCTTAGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAACAAGGAGTAAAAGAACATGTCACAGTACATGAGGTCTTAGTG  992

seq1  ATAGATAATAAGCACTAATGTTTGTTCCTGGAATTC  1034
      ||||||||||||||||||||||||||||||||||||
seq2  ATAGATAATAAGCACTAATGTTTGTTCCTGGAATTC  1028


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