BAC Information

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BAC

Clone NameB6Ng01-319D24
Chromosome5 (Build37)
Map Location 148,533,554 - 148,534,514
singlet/doubletsinglet
Overlap geneFlt1
Upstream geneUsp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3
Downstream geneLOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319D24.b
ACCGA108930
length961
definitionB6Ng01-319D24.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacaaagcaaacagatggggtccttccggtttcccggctccctg
ccattcttctgcatgttaatgggtgctaagccctttgacaccctagctga
tgagctaggctgctgctgccatcggggtcacacctcatctttctctctgg
tagaatgtactagaccaaccaattaactgagtctttagtgggcttccttt
tgcattgcagggggtgcaggggtggtctgatggaggatgtgtcccagatg
cctcagccactacatcactatcttgggtctttttttttttttttttttcc
ctagcagaatgtgtaactatgacagaggctaaatcacattacctatactg
aggacatctgtctctttaacctcccaccccttatttctttctttaaaaaa
ttaatctttttaatttcttttttttttaaacagctatgttctaaaactgt
tccagattacaacaaggctagtaaacctcttatttaataattaaacctat
ttttttgtgacttctaaaagaccaaccaagtcattacttttttttcctct
ccgaaactatggggacaatttctgaatccttgaatgtgtataatatagaa
cttgaagtgatatgtataccccgctcccccccccccaaaaaagaaaaagg
ctttatagtgacacttgccccccttcccttcagaaaagtggttctgtgga
gggaaactatgtggctgatctctaccctggcttttgcggtaaagctaaaa
gaatacaaagtaacaggacaggcagggtttttgattgtgtgtgcagtgag
cctcgggataaaaagggaagttcgaggaactgggaactagtgagcaggtt
tggctcacaacacactaggtgctgtgtgggtggcggcccacactaggtgc
tatactgtcatcaccaggttgaagaccatttttcattgtcctttgatagt
gtgtaagagga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_148533554_148534514
seq2: B6Ng01-319D24.b_43_1003 (reverse)

seq1  TCCTCTCTACACACTATC-AAGGACATTGAAAAATGGTTCTCAGCCT-GC  48
      |||||| ||||||||||| ||||||| |||||||||||  ||| ||| | 
seq2  TCCTCT-TACACACTATCAAAGGACAATGAAAAATGGTCTTCAACCTGGT  49

seq1  GATGACAGTATAGCACCTAGTGTGTGCCGCCAACCACACAGCACCTAGTG  98
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  GATGACAGTATAGCACCTAGTGTGGGCCGCCACCCACACAGCACCTAGTG  99

seq1  TGTGCTGAGCCAAACCCTGCTCACTAGTTCCCAGCTCCTCGAAC-TCCCT  147
      |||  ||||||||| ||||||||||||||||||| ||||||||| |||||
seq2  TGTTGTGAGCCAAA-CCTGCTCACTAGTTCCCAGTTCCTCGAACTTCCCT  148

seq1  TTTTATCCCGAGGCTCACCTGCACACACAATCAAAACCCCTGCCTGTCCT  197
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TTTTATCCCGAGGCTCA-CTGCACACACAATCAAAAACCCTGCCTGTCCT  197

seq1  GTTACTTTGTATTCTCTTAGCTTTACCGCAAAAGCCAGGGTAGAGATCAG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTACTTTGTATTCTTTTAGCTTTACCGCAAAAGCCAGGGTAGAGATCAG  247

seq1  CCACATAGTTTCCCTCCACAGAACCACTTTTCTGAAGGGAAGGGGGGCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGTTTCCCTCCACAGAACCACTTTTCTGAAGGGAAGGGGGGCAA  297

seq1  GTGTCACTATAAAGCCTTTTTCTTTTTTGGGGGGGGGGGAGCGGGGTATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACTATAAAGCCTTTTTCTTTTTTGGGGGGGGGGGAGCGGGGTATA  347

seq1  CATATCACTTCAAGTTCTATATTATACACATTCAAGGATTCAGAAATTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCACTTCAAGTTCTATATTATACACATTCAAGGATTCAGAAATTGT  397

seq1  CCCCATAGTTTCGGAGAGGAAAAAAAAGTAATGACTTGGTTGGTCTTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATAGTTTCGGAGAGGAAAAAAAAGTAATGACTTGGTTGGTCTTTTA  447

seq1  GAAGTCACAAAAAAATAGGTTTAATTATTAAATAAGAGGTTTACTAGCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCACAAAAAAATAGGTTTAATTATTAAATAAGAGGTTTACTAGCCT  497

seq1  TGTTGTAATCTGGAACAGTTTTAGAACATAGCTGTTTAAAAAAAAAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATCTGGAACAGTTTTAGAACATAGCTGTTTAAAAAAAAAAGAA  547

seq1  ATTAAAAAGATTAATTTTTTAAAGAAAGAAATAAGGGGTGGGAGGTTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGATTAATTTTTTAAAGAAAGAAATAAGGGGTGGGAGGTTAAA  597

seq1  GAGACAGATGTCCTCAGTATAGGTAATGTGATTTAGCCTCTGTCATAGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGATGTCCTCAGTATAGGTAATGTGATTTAGCCTCTGTCATAGTT  647

seq1  ACACATTCTGCTAGGGAAAAAAAAAAAAAAAAAAAGACCCAAGATAGTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTGCTAGGGAAAAAAAAAAAAAAAAAAAGACCCAAGATAGTGA  697

seq1  TGTAGTGGCTGAGGCATCTGGGACACATCCTCCATCAGACCACCCCTGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGCTGAGGCATCTGGGACACATCCTCCATCAGACCACCCCTGCA  747

seq1  CCCCCTGCAATGCAAAAGGAAGCCCACTAAAGACTCAGTTAATTGGTTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCAATGCAAAAGGAAGCCCACTAAAGACTCAGTTAATTGGTTGG  797

seq1  TCTAGTACATTCTACCAGAGAGAAAGATGAGGTGTGACCCCGATGGCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTACATTCTACCAGAGAGAAAGATGAGGTGTGACCCCGATGGCAGC  847

seq1  AGCAGCCTAGCTCATCAGCTAGGGTGTCAAAGGGCTTAGCACCCATTAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTAGCTCATCAGCTAGGGTGTCAAAGGGCTTAGCACCCATTAAC  897

seq1  ATGCAGAAGAATGGCAGGGAGCCGGGAAACCGGAAGGACCCCATCTGTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGAATGGCAGGGAGCCGGGAAACCGGAAGGACCCCATCTGTTT  947

seq1  GCTTTGTGGAATTC  961
      ||||||||||||||
seq2  GCTTTGTGGAATTC  961