BAC Information

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BAC

Clone NameB6Ng01-319H21
Chromosome5 (Build37)
Map Location 115,976,577 - 116,109,558
singlet/doubletdoublet
Overlap genePxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64
Upstream geneBC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1, Pop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021
Downstream geneLOC665032, Cit, Prkab1, LOC545798, Ccdc60, 4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319H21.bB6Ng01-319H21.g
ACCGA109107GA109108
length1,1311,192
definitionB6Ng01-319H21.b B6Ng01-319H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,976,577 - 115,977,706)(116,108,366 - 116,109,558)
sequence
gaattcccttcacctggggctgacatgacactgaaacagcgttagttagc
cccaggcactacactcatcacaactcgagaggcatcgaggtgtgagtgca
gggccatgcctttagctgggccagggctttctcacctcctctgcactgtg
gctgctgggagtttcctccccagagtaatgtggtggggacccagatactg
tacagtttacagatctcctggaggtcaccgccatgtcagttggtgttgta
aaaatcctcttcctttctgggctttgggagaggatctccatgggtgccta
tcacactgaatgtcctcagcaagctgtgtctcaaaactttggagtcggga
atcggagggcttagctagacccatctctgtatttacgagtgcgttgggcc
agaaggctggccttagaccagacgcccaaggggactggcagtgtctttct
ttctgttggccgcgtgcattgagcctccacatcccaagcaccaggctcgc
ggatgcttgtgcttggtgatcttttgaatccgggagtggctttacagtca
aggggaaagagattggagttttaattgggtcttagatgtcagtcccaagt
ccctttctcatgtagcccaggctagccagactcttaatctttctgcttct
acctctcaaactctaggtatgagcctcgatgtcctgctaagttttttttg
tttgtttgtttctctgtgtagccctgcctgtcctggaactcactctgtag
accaggctggcctcgaactcagaaatccatctgcctctgcctcccaagtg
ctgggatcaaaggcgtgcgccaccaccgccgcctggccctgctaagatct
ttttgacagagacaagtgttctgctcctggtgtcgtaacaaatggagctt
gtgacagtgtggagggccccgctacccagcggacacttccccaagagtct
tcttcctgcgcattcttctcatgcctgctcagggtggggaagcagggata
ttgtcagctgttcagcctccacccggacctcctggcaacacaatgagagt
ggcaactgactgtgttaggacggtacagtttttataagctataacgtaag
attttataacctttattaggtattacatgtg
gaattctttacacccctggaaactgggccggaagtcagtgtgagcatgca
ccctcaaacactaaccagactgttaagtagaagactgcaaattatttaag
tgctaattatttgtatgaggcaaaatctaataaccaacatgaagacctgc
ctggcacccaccacccctgtgtcctctgttcttaccatcccccttggcat
tgatgagtacagagcaaatactagtagatggtctgggtcttcaggattaa
ttgcagaatataaaagacaagcacccaggagctgaagagatggctcagca
gttgagagcacttgttcttgcagaggacccaggttcagcttccaacaccc
acatggtgggtcacaaccataactccagttcctgacactctgtcctaatc
tccatgggcccctcacacatacatggcgcatattcctacagccagccacc
tccacacggtggcagttttcctgtagtgtggcttgagagcagggtacctc
gtatgagtcgtgggcagcatccaagtccagacagaagtcatcaggtcctg
gccactgtgtgctcccgcacactgccagcctcctccatcttttccccccc
aaaaaaagggtttctttgtgtagctctggctgtcctggcactcactttgt
agaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccgag
tgctgggattaaaggcgtgcgccaccacgcccggctccagcctcctccat
cttaacgcctctcctcctctgcatggtcacagaggagctgagcactcaca
ggtgtgacccctccagctccgcctctgtctggaagattccaccccacctg
ctcatccttcagttgcagagcagatttcactccctccttgggtcctctct
tgctctccttcctgcaccctctgctctaccttaccgtggtgatgacattc
ccatgttatcttccagtctggcagaccacagcccccataatgaccagcgc
aagtgctgactcggcgttttctctggcagtcttagcacagcactggacaa
gctcgagccacagagactcagatggttgtgaaagaaagacagggaccatg
ccttaaggttgccttcaagtgtgctcgttttaatgatgacgcctctgtgg
gtgtaacttgaattactgttatagataaaccgagaaatccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_115976577_115977706
seq2: B6Ng01-319H21.b_46_1176

seq1  GAATTCCCTTCACCTGGGGCTGACATGACACTGAAACAGCGTTAGTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCACCTGGGGCTGACATGACACTGAAACAGCGTTAGTTAGC  50

seq1  CCCAGGCACTACACTCATCACAACTCGAGAGGCATCGAGGTGTGAGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCACTACACTCATCACAACTCGAGAGGCATCGAGGTGTGAGTGCA  100

seq1  GGGCCATGCCTTTAGCTGGGCCAGGGCTTTCTCACCTCCTCTGCACTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGCCTTTAGCTGGGCCAGGGCTTTCTCACCTCCTCTGCACTGTG  150

seq1  GCTGCTGGGAGTTTCCTCCCCAGAGTAATGTGGTGGGGACCCAGATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGGAGTTTCCTCCCCAGAGTAATGTGGTGGGGACCCAGATACTG  200

seq1  TACAGTTTACAGATCTCCTGGAGGTCACCGCCATGTCAGTTGGTGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTACAGATCTCCTGGAGGTCACCGCCATGTCAGTTGGTGTTGTA  250

seq1  AAAATCCTCTTCCTTTCTGGGCTTTGGGAGAGGATCTCCATGGGTGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTCTTCCTTTCTGGGCTTTGGGAGAGGATCTCCATGGGTGCCTA  300

seq1  TCACACTGAATGTCCTCAGCAAGCTGTGTCTCAAAACTTTGGAGTCGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGAATGTCCTCAGCAAGCTGTGTCTCAAAACTTTGGAGTCGGGA  350

seq1  ATCGGAGGGCTTAGCTAGACCCATCTCTGTATTTACGAGTGCGTTGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGAGGGCTTAGCTAGACCCATCTCTGTATTTACGAGTGCGTTGGGCC  400

seq1  AGAAGGCTGGCCTTAGACCAGACGCCCAAGGGGACTGGCAGTGTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGCCTTAGACCAGACGCCCAAGGGGACTGGCAGTGTCTTTCT  450

seq1  TTCTGTTGGCCGCGTGCATTGAGCCTCCACATCCCAAGCACCAGGCTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGCCGCGTGCATTGAGCCTCCACATCCCAAGCACCAGGCTCGC  500

seq1  GGATGCTTGTGCTTGGTGATCTTTTGAATCCGGGAGTGGCTTTACAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTGTGCTTGGTGATCTTTTGAATCCGGGAGTGGCTTTACAGTCA  550

seq1  AGGGGAAAGAGATTGGAGTTTTAATTGGGTCTTAGATGTCAGTCCCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAGAGATTGGAGTTTTAATTGGGTCTTAGATGTCAGTCCCAAGT  600

seq1  CCCTTTCTCATGTAGCCCAGGCTAGCCAGACTCTTAATCTTTCTGCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCATGTAGCCCAGGCTAGCCAGACTCTTAATCTTTCTGCTTCT  650

seq1  ACCTCTCAAACTCTAGGTATGAGCCTCGATGTCCTGCTAAGTTTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCAAACTCTAGGTATGAGCCTCGATGTCCTGCTAAGTTTTTTTTG  700

seq1  TTTGTTTGTTTCTCTGTGTAGCCCTGCCTGTCCTGGAACTCACTCTGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTCTCTGTGTAGCCCTGCCTGTCCTGGAACTCACTCTGTAG  750

seq1  ACCAGGCTGGCCTCGAACTCAGAAATCCATCTGCCTCTGCCTCCCAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCTGGCCTCGAACTCAGAAATCCATCTGCCTCTGCCTCCCAAGTG  800

seq1  CTGGGATCAAAGGCGTGCGCCACCACCGCCGCCTGGCCCTGCTAAGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCAAAGGCGTGCGCCACCACCGCCGCCTGGCCCTGCTAAGATCT  850

seq1  TTTTGACAGAGACAAGTGTTCTGCTCCTGGTGTCGTAACAAATGGAGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGAGACAAGTGTTCTGCTCCTGGTGTCGTAACAAATGGAGCTT  900

seq1  GTGACAGTGTGGAGGGCCCCGCTACCCAGCGGACACCTCCCCAAGAGTCT  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGACAGTGTGGAGGGCCCCGCTACCCAGCGGACACTTCCCCAAGAGTCT  950

seq1  TC-TCCTGCGCATTC-TCTCATGCCTGCTCA-GGTGGGGAAGCCAGGGAT  997
      || |||||||||||| ||||||||||||||| |||||||||| |||||||
seq2  TCTTCCTGCGCATTCTTCTCATGCCTGCTCAGGGTGGGGAAG-CAGGGAT  999

seq1  ATTGTCAGCTGTTCAGCCTCCACCCG--ACTCCTGGC-ACACCATGAGAG  1044
      ||||||||||||||||||||||||||   |||||||| |||| |||||||
seq2  ATTGTCAGCTGTTCAGCCTCCACCCGGACCTCCTGGCAACACAATGAGAG  1049

seq1  TGGC-ACTGAACTGTGTAAGGACGGTACAGTTTTTATTAGTTATTAACGT  1093
      |||| |||| ||||||| ||||||||||||||||||| || || ||||||
seq2  TGGCAACTG-ACTGTGTTAGGACGGTACAGTTTTTATAAGCTA-TAACGT  1097

seq1  AGATTTTTATTACCTTTTATTTATGTATTTACATGTG  1130
      |   |||||| ||||||   ||| ||| |||||||||
seq2  AAGATTTTATAACCTTT--ATTAGGTA-TTACATGTG  1131

seq1: chr5_116108366_116109558
seq2: B6Ng01-319H21.g_67_1258 (reverse)

seq1  GTGGATCT---GGTTTATCTAT-ACATGTACTCAAGTTACACCCCACAGA  46
      |||||| |   ||||||||||| |||   | |||||||||| ||||||||
seq2  GTGGATTTCTCGGTTTATCTATAACAGTAATTCAAGTTACA-CCCACAGA  49

seq1  GGCCCTCATCATTAAACAG----CACTTGAGAGCCCACCCTTAAAGCCAT  92
      || | |||||||||||  |    |||||||  |  || |||||| ||   
seq2  GG-CGTCATCATTAAAACGAGCACACTTGAAGG--CAACCTTAAGGCATG  96

seq1  GTCACTTGGTCTTTCCTTTCACCACCATCTGAGTCTCTGT-GCTCGAGCT  141
      ||| ||  |||||| ||||||| ||||||||||||||||| |||||||| 
seq2  GTCCCT--GTCTTT-CTTTCACAACCATCTGAGTCTCTGTGGCTCGAGC-  142

seq1  TTGTCCAGTGGCCTGTGCTAGGACTGCCAGGAGAAAACGCCGAGTCAGCA  191
      ||||||||||  |||||||| |||||||| ||||||||||||||||||||
seq2  TTGTCCAGTG--CTGTGCTAAGACTGCCA-GAGAAAACGCCGAGTCAGCA  189

seq1  CTTGCGCTGGTCATTATGGGGGCTGTGGTCTGCCAGACTGGAAGATAACA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCGCTGGTCATTATGGGGGCTGTGGTCTGCCAGACTGGAAGATAACA  239

seq1  TGGGAATGTCATCACCACGGTAAGGTAGAGCAGAGGGTGCAGGAAGGAGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATGTCATCACCACGGTAAGGTAGAGCAGAGGGTGCAGGAAGGAGA  289

seq1  GCAAGAGAGGA-CCAAGGAGGGAGTGAAATCTGCTCTGCAACTGAAGGAT  340
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGGACCCAAGGAGGGAGTGAAATCTGCTCTGCAACTGAAGGAT  339

seq1  GAGCAGGTGGGGTGGAATCTTCCAGACAGAGGCGGAGCTGGAGGGGTCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGTGGGGTGGAATCTTCCAGACAGAGGCGGAGCTGGAGGGGTCAC  389

seq1  ACCTGTGAGTGCTCAGCTCCTCTGTGACCATGCAGAGGAGGAGAGGCGTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAGTGCTCAGCTCCTCTGTGACCATGCAGAGGAGGAGAGGCGTT  439

seq1  AAGATGGAGGAGGCTGGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAGGAGGCTGGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCA  489

seq1  GCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGG  539

seq1  TCTACAAAGTGAGTGCCAGGACAGCCAGAGCTACACAAAGAAACCCTTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGTGAGTGCCAGGACAGCCAGAGCTACACAAAGAAACCCTTTT  589

seq1  TTTGGGGGGGAAAAGATGGAGGAGGCTGGCAGTGTGCGGGAGCACACAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGGAAAAGATGGAGGAGGCTGGCAGTGTGCGGGAGCACACAGT  639

seq1  GGCCAGGACCTGATGACTTCTGTCTGGACTTGGATGCTGCCCACGACTCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGACCTGATGACTTCTGTCTGGACTTGGATGCTGCCCACGACTCA  689

seq1  TACGAGGTACCCTGCTCTCAAGCCACACTACAGGAAAACTGCCACCGTGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGGTACCCTGCTCTCAAGCCACACTACAGGAAAACTGCCACCGTGT  739

seq1  GGAGGTGGCTGGCTGTAGGAATATGCGCCATGTATGTGTGAGGGGCCCAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGCTGGCTGTAGGAATATGCGCCATGTATGTGTGAGGGGCCCAT  789

seq1  GGAGATTAGGACAGAGTGTCAGGAACTGGAGTTATGGTTGTGACCCACCA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAGGACAGAGTGTCAGGAACTGGAGTTATGGTTGTGACCCACCA  839

seq1  TGTGGGTGTTGGAAGCTGAACCTGGGTCCTCTGCAAGAACAAGTGCTCTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGTTGGAAGCTGAACCTGGGTCCTCTGCAAGAACAAGTGCTCTC  889

seq1  AACTGCTGAGCCATCTCTTCAGCTCCTGGGTGCTTGTCTTTTATATTCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTGAGCCATCTCTTCAGCTCCTGGGTGCTTGTCTTTTATATTCTG  939

seq1  CAATTAATCCTGAAGACCCAGACCATCTACTAGTATTTGCTCTGTACTCA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATCCTGAAGACCCAGACCATCTACTAGTATTTGCTCTGTACTCA  989

seq1  TCAATGCCAAGGGGGATGGTAAGAACAGAGGACACAGGGGTGGTGGGTGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCAAGGGGGATGGTAAGAACAGAGGACACAGGGGTGGTGGGTGC  1039

seq1  CAGGCAGGTCTTCATGTTGGTTATTAGATTTTGCCTCATACAAATAATTA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTCTTCATGTTGGTTATTAGATTTTGCCTCATACAAATAATTA  1089

seq1  GCACTTAAATAATTTGCAGTCTTCTACTTAACAGTCTGGTTAGTGTTTGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAAATAATTTGCAGTCTTCTACTTAACAGTCTGGTTAGTGTTTGA  1139

seq1  GGGTGCATGCTCACACTGACTTCCGGCCCAGTTTCCAGGGGTGTAAAGAA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCATGCTCACACTGACTTCCGGCCCAGTTTCCAGGGGTGTAAAGAA  1189

seq1  TTC  1193
      |||
seq2  TTC  1192