BAC Information

Click to search

BAC

Clone NameB6Ng01-319K07
Chromosome5 (Build37)
Map Location 49,838,926 - 49,961,487
singlet/doubletdoublet
Overlap geneEG433885
Upstream geneKcnip4, LOC100041668, LOC100041659
Downstream geneLOC666223, Gpr125, EG637307
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319K07.bB6Ng01-319K07.g
ACCGA109221GA109222
length1,191710
definitionB6Ng01-319K07.b B6Ng01-319K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,960,291 - 49,961,487)(49,838,926 - 49,839,571)
sequence
gaattctatttatcagctggcactgggcatcttaaatcagttaagtaccg
tgctctgtggagcctggatatggttagtgagacacagtgatgaaaggaac
ataattgaatgataaatactataatgtagtaaagggaacattattgttgc
caataatgttttttttattatagagaagttgcttctcttagaaatcattt
gtctatgtaatactatgcaaggttttgcaaacatctttgttttgaacttt
tagctcctaatcttgattcattttatttttctcagacaaccacatctgat
agcctccactttagactaagcttgtcataaaaagttaccctgtcagggat
cttgacctgcattgctttgaaactttgattttcttttgaattattaaggg
acatatttcttcagaggaatcagaaaacatataaagtaatgtttatcatt
atatttcctgctttttaaatttatttattttatgtgtgtgagtgttctat
ctgcacatacagctgcttgctagaagagggcatcagatcccattacagat
gattgtgagccaccgtgtggttgctgggaattgaactcaggacccctgga
agagcagttagtgatcttaaccactgagccatctctccagcccctatcat
tgtacttcctaaaaccagcaatcagtttgtatattagaatacaaatctac
aaccaccttttctacttaagagaactgacttatttaaagatgtctaaata
tgagtgaaaatctgaaattaaaaatttgtattgtaaacaattggggtttt
atttgtttattttctctttcttttattgaaaataaatgtttttcatagga
attttattttagcacaaaagcagagagcatgttaataaagtacaatgaac
actaaagtggacttttgtttttcttaagaatatgtccaagttaaagaacc
attaaagcagtattaaatgcaatattattattccattacaatgtataatc
ccaccacatttaatatgtacttattcagatcatattgtcatactcttatg
acagattgagatctttttttccaatatcatcaatgccaattaaatgggcg
agcagccagctttagaacctcacagtcatttctggcaccatcagttcata
actacaagtctggacgatttaatcagaagtatgaatgcttc

gaattcctagcacaagtccaccccttttgtatggaaaaagacaataaact
tagagtttctaagcctctactccagcctgggggacccaatgcactttatc
tattaggctacagtctatatcttttgggagttgggtatcttgattactat
attcgtgatagttttattgttgtgacaaaacaccatgaacataacaattt
ataaaagaaactgcttaaatcggcttacaaatgaggtgaatcagagttta
tagaagtagaacaaggacaagctagcagaaacagctgcaagcttacatct
ttacccacaagtagaaagtagagagactgaggagagtcttttgaaacccc
aaagcttacctgaggctacacctcctaattcttcccaagtaactctgcta
agttgggatcgaatgttcaaatatacgatagtatgggggacgttctcctt
ccagccaccacagtgcagaagcaacatcctacagagaagtaactgggact
tcagtcattgcaggtatgctcttgcttagttccaggacaaaagatagaag
caacaattagtggttcaaaatgagattattttcttctttccttctttctt
tccttctatgcttctttccttctttcctttctttctttctttctttcttt
ctttctttctttctttctttctttccttctctctctctctctctctctct
ctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_49960291_49961487
seq2: B6Ng01-319K07.b_45_1235 (reverse)

seq1  GAAGCATTCATAC-TCTGATTAAATCTGCTCAGACATTGAAGTTATGAAC  49
      ||||||||||||| |||||||||||| |  ||||| ||| ||||||||||
seq2  GAAGCATTCATACTTCTGATTAAATC-GTCCAGAC-TTGTAGTTATGAAC  48

seq1  ATGAATGGTG-CAG-AATGACTGTGAG--TCTAAAGCT-GCTGCTTCGCC  94
       || |||||| ||| ||||||||||||  ||||||||| ||||| |||||
seq2  -TG-ATGGTGCCAGAAATGACTGTGAGGTTCTAAAGCTGGCTGC-TCGCC  95

seq1  ATTTTTATTGGGCATTGATGATATGGAAAAAAGAATTCTCAATTCCTGTC  144
        ||| ||| |||||||||||||| | ||||| |  |||||||  |||||
seq2  CATTTAATT-GGCATTGATGATATTGGAAAAAAAGATCTCAAT--CTGTC  142

seq1  ATAAGAGTATGACATATTGATCCTGAATTAAGTACATATTAATTGTGGTG  194
      ||||||||||||||   |||| ||||| |||||||||||||| |||||||
seq2  ATAAGAGTATGACAATATGAT-CTGAA-TAAGTACATATTAAATGTGGTG  190

seq1  GGAATTATACATTGTAATGGAAT-ATAATATTGCATTTTAATACTGCTTT  243
      || |||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GG-ATTATACATTGTAATGGAATAATAATATTGCA-TTTAATACTGCTTT  238

seq1  AATGGTTCTTTAACTTGGACATATTCTTAAGAAAAAACAAAAGTCCACTT  293
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATGGTTCTTTAACTTGGACATATTCTTAAG-AAAAACAAAAGTCCACTT  287

seq1  TAGTGTTCATTGTACTTTATTAACATGCTCTCTGCTTTTGTGCTAAAATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCATTGTACTTTATTAACATGCTCTCTGCTTTTGTGCTAAAATA  337

seq1  AAATTCCTATGAAAAACATTTATTTTCAATAAAAGAAAGAGAAAATAAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTATGAAAAACATTTATTTTCAATAAAAGAAAGAGAAAATAAAC  387

seq1  AAATAAAACCCCAATTGTTTACAATACAAATTTTTAATTTCAGATTTTCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCCCAATTGTTTACAATACAAATTTTTAATTTCAGATTTTCA  437

seq1  CTCATATTTAGACATCTTTAAATAAGTCAGTTCTCTTAAGTAGAAAAGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTAGACATCTTTAAATAAGTCAGTTCTCTTAAGTAGAAAAGGT  487

seq1  GGTTGTAGATTTGTATTCTAATATACAAACTGATTGCTGGTTTTAGGAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAGATTTGTATTCTAATATACAAACTGATTGCTGGTTTTAGGAAG  537

seq1  TACAATGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGATCACTAACTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGATAGGGGCTGGAGAGATGGCTCAGTGGTTAAGATCACTAACTG  587

seq1  CTCTTCCAGGGGTCCTGAGTTCAATTCCCAGCAACCACACGGTGGCTCAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGGGGTCCTGAGTTCAATTCCCAGCAACCACACGGTGGCTCAC  637

seq1  AATCATCTGTAATGGGATCTGATGCCCTCTTCTAGCAAGCAGCTGTATGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTGTAATGGGATCTGATGCCCTCTTCTAGCAAGCAGCTGTATGT  687

seq1  GCAGATAGAACACTCACACACATAAAATAAATAAATTTAAAAAGCAGGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGAACACTCACACACATAAAATAAATAAATTTAAAAAGCAGGAA  737

seq1  ATATAATGATAAACATTACTTTATATGTTTTCTGATTCCTCTGAAGAAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATGATAAACATTACTTTATATGTTTTCTGATTCCTCTGAAGAAAT  787

seq1  ATGTCCCTTAATAATTCAAAAGAAAATCAAAGTTTCAAAGCAATGCAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTTAATAATTCAAAAGAAAATCAAAGTTTCAAAGCAATGCAGGT  837

seq1  CAAGATCCCTGACAGGGTAACTTTTTATGACAAGCTTAGTCTAAAGTGGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCTGACAGGGTAACTTTTTATGACAAGCTTAGTCTAAAGTGGA  887

seq1  GGCTATCAGATGTGGTTGTCTGAGAAAAATAAAATGAATCAAGATTAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATCAGATGTGGTTGTCTGAGAAAAATAAAATGAATCAAGATTAGGA  937

seq1  GCTAAAAGTTCAAAACAAAGATGTTTGCAAAACCTTGCATAGTATTACAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAGTTCAAAACAAAGATGTTTGCAAAACCTTGCATAGTATTACAT  987

seq1  AGACAAATGATTTCTAAGAGAAGCAACTTCTCTATAATAAAAAAAACATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATGATTTCTAAGAGAAGCAACTTCTCTATAATAAAAAAAACATT  1037

seq1  ATTGGCAACAATAATGTTCCCTTTACTACATTATAGTATTTATCATTCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAACAATAATGTTCCCTTTACTACATTATAGTATTTATCATTCAA  1087

seq1  TTATGTTCCTTTCATCACTGTGTCTCACTAACCATATCCAGGCTCCACAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTCCTTTCATCACTGTGTCTCACTAACCATATCCAGGCTCCACAG  1137

seq1  AGCACGGTACTTAACTGATTTAAGATGCCCAGTGCCAGCTGATAAATAGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGTACTTAACTGATTTAAGATGCCCAGTGCCAGCTGATAAATAGA  1187

seq1  ATTC  1197
      ||||
seq2  ATTC  1191


seq1: chr5_49838926_49839571
seq2: B6Ng01-319K07.g_68_713

seq1  GAATTCCTAGCACAAGTCCACCCCTTTTGTATGGAAAAAGACAATAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCACAAGTCCACCCCTTTTGTATGGAAAAAGACAATAAACT  50

seq1  TAGAGTTTCTAAGCCTCTACTCCAGCCTGGGGGACCCAATGCACTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTCTAAGCCTCTACTCCAGCCTGGGGGACCCAATGCACTTTATC  100

seq1  TATTAGGCTACAGTCTATATCTTTTGGGAGTTGGGTATCTTGATTACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGCTACAGTCTATATCTTTTGGGAGTTGGGTATCTTGATTACTAT  150

seq1  ATTCGTGATAGTTTTATTGTTGTGACAAAACACCATGAACATAACAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGATAGTTTTATTGTTGTGACAAAACACCATGAACATAACAATTT  200

seq1  ATAAAAGAAACTGCTTAAATCGGCTTACAAATGAGGTGAATCAGAGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAACTGCTTAAATCGGCTTACAAATGAGGTGAATCAGAGTTTA  250

seq1  TAGAAGTAGAACAAGGACAAGCTAGCAGAAACAGCTGCAAGCTTACATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGAACAAGGACAAGCTAGCAGAAACAGCTGCAAGCTTACATCT  300

seq1  TTACCCACAAGTAGAAAGTAGAGAGACTGAGGAGAGTCTTTTGAAACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACAAGTAGAAAGTAGAGAGACTGAGGAGAGTCTTTTGAAACCCC  350

seq1  AAAGCTTACCTGAGGCTACACCTCCTAATTCTTCCCAAGTAACTCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTACCTGAGGCTACACCTCCTAATTCTTCCCAAGTAACTCTGCTA  400

seq1  AGTTGGGATCGAATGTTCAAATATACGATAGTATGGGGGACGTTCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGATCGAATGTTCAAATATACGATAGTATGGGGGACGTTCTCCTT  450

seq1  CCAGCCACCACAGTGCAGAAGCAACATCCTACAGAGAAGTAACTGGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACCACAGTGCAGAAGCAACATCCTACAGAGAAGTAACTGGGACT  500

seq1  TCAGTCATTGCAGGTATGCTCTTGCTTAGTTCCAGGACAAAAGATAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATTGCAGGTATGCTCTTGCTTAGTTCCAGGACAAAAGATAGAAG  550

seq1  CAACAATTAGTGGTTCAAAATGAGATTATTTTCTTCTTTCCTTCTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTAGTGGTTCAAAATGAGATTATTTTCTTCTTTCCTTCTTTCTT  600

seq1  TCCTTCTATGCTTCTTTCCTTCTTTCCTTTCTTTCTTTCTTTCTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTATGCTTCTTTCCTTCTTTCCTTTCTTTCTTTCTTTCTTT  646


| Home | SequenceCutter | Blast | Download |