BAC Information

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BAC

Clone NameB6Ng01-320A10
Chromosome5 (Build37)
Map Location 31,368,788 - 31,461,880
singlet/doubletdoublet
Overlap geneCad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2
Upstream geneTyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik
Downstream geneEif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320A10.bB6Ng01-320A10.g
ACCGA109506GA109507
length1,1711,088
definitionB6Ng01-320A10.b B6Ng01-320A10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,460,706 - 31,461,880)(31,368,788 - 31,369,840)
sequence
gaattcattacattgatgccggttacctcggttttaaggcctactttact
gctccgcgaaaaggcactgtctgggtgagcctctcctttcccgagcttca
gtatgcggaaatgatcaattgtttactgtagtaagtcaggagcagacagt
aacacagagcaccattcagggcacagggaggagcaggtatatggtaactg
catcattagggacaagaattgggtttttgtatctctctcctcaacatcag
actatatagtcattatcacaggaatgaatgagtggacaggtgaaataaat
atgtcttttcctatgaagagtctttcaggttcagactggcttgggacagt
agctgcaggagatatatctggggagctcattgcagctattttacctgata
tggcatcaaatccaatcaatgtcaagaaacctgcagaaagacgatttgta
agtatatgaacatttattacaccataatcttttaccttgccagctcttgg
tagaatgcagacttgtgcttgctccaagctctgatatggtccttgaagct
aggacttaggtataatcttctttagaactgagcatgtttctttaagaatt
gttattgtcattacacttaattcatgtatatggggcttggtgtggccaag
gggcagctttggagagtcaggtctctgtctctacctcaggccatcgggtt
gtagcccttgcgccagcctcagtgtgtgtttattctttccgttcttgaga
ctttgctacagtaagccagtttcctttctgctttgtgttcagtatttaaa
atctttttcgagagatggcttagcatgtaaagataactgctgctaagcct
atatgagctgagcttattccctggggcccacaggatgggaagaaagaatt
gactacctcaagttgttttttgaccttccacatgcaccccatggtatatg
tgaatacatgcagttataaataaattaaaatttagatgctaacctttatt
gatcttctctttagcctatatataaagcagatttgataccataccaggac
agcccgagaccaagactactccctcgacttctctgagaccccatcctccc
aaggcagacttacactggaatcaatccaacatcactacttgctctttcag
atacagatctggtaagttgtg
gaattctctgtaacaagccctagctgtcctgaagttcgctttgtagatca
gactggcctcagactcacagagatctgcctacctctgtctcctgagtgct
gggattcaaggcatgcaccaccatgctcagcttgcttttaggtttcttaa
tggtgaagcaagcttcgtaagacaccaccaccatgggccttgagaacctt
ccaaagatcaagtgactgccatgagtgtgttgggtatccccacgtctacc
tgccctccatcccattcttccaggcgaggtcatgggcatcgggcggtcct
ttgaggaggccttccaaaaggccctgcgcatggtcgatgagaactgcgta
ggcttcgaccatacagtaaagccagtcagcgacatggtaagcagctctcc
tctccaaaagcaccctgacttgggccctgctccataccaccccttggctg
gttgacagtaatggcagcatcgttcacatgatttactattccttatttcc
ctggctgtatttttttccaccccggcactgccctgcatccagccgtctgt
gctcttcccccaacaggagctggagactccgacggataagcggatctttg
tggtggctgccgctctgtgggctggctactctgtggagcgcctctacgag
ctcacccgcattgattgctggttcctgcaccggatgaagcgcattgtgac
ccacgccccgttgctggaacaacaccgtggacaagctttaccccaagacc
tgctgcaccagggccaagtgcctcggcttctcagacaagcagattgccct
ggcagtcctgaggtcagagatggtggtgtggggagggagcttttgcctcg
gaggcccattggaaggggagccatggaagttcttctcttcattctgcccc
ataggctgtttccttgctaacactgcctagcgcttggccttaagtcagtc
taatactccattcccacatctggtctttcccttcctttagcacagagctg
gcctgttccgtaagctgccgtcagggatctaggggatcctgcccagccgt
tgaaacatgatgaacacagcttgcaagcctgattgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31460706_31461880
seq2: B6Ng01-320A10.b_43_1213 (reverse)

seq1  CACAACTTACCAGATCTGTATCTTGAAAGAGCAAGTAGTGATGGTTGA-T  49
      |||||||||||||||||||||| |||||||||||||||||||| | || |
seq2  CACAACTTACCAGATCTGTATC-TGAAAGAGCAAGTAGTGATGTTGGATT  49

seq1  GGTTTCAGTGTAGGTTCTTGCTTTGGGAGGATTGGGGGTCTCAGAGGAAG  99
      | || ||||||| ||   ||| ||||||||||  ||||||||||| ||||
seq2  GATTCCAGTGTAAGT--CTGCCTTGGGAGGAT--GGGGTCTCAGA-GAAG  94

seq1  TCGA-GGAGTAGTCTTGGTCTTCGGGGCTGTCCTGGTATGGTATCAAATC  148
      |||| ||||||||||||||||   ||||||||||||||||||||||||||
seq2  TCGAGGGAGTAGTCTTGGTCT--CGGGCTGTCCTGGTATGGTATCAAATC  142

seq1  TGCTTTATATATAGGCTAAAGAGAAGATCAAT-AAGGTTAGCATCTTAAA  197
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TGCTTTATATATAGGCTAAAGAGAAGATCAATAAAGGTTAGCATC-TAAA  191

seq1  TTTTAATTTATTTATAACTGCATGTATTCACATATACCATGGGGTGCATG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTATTTATAACTGCATGTATTCACATATACCATGGGGTGCATG  241

seq1  TGG-AGGTCAAAAAACAACTTGAGGTAGTCAATTCTTTCTT-CCATCCTG  295
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGAAGGTCAAAAAACAACTTGAGGTAGTCAATTCTTTCTTCCCATCCTG  291

seq1  TGGGCCCCAGGGAATAAGCTCAGCTCATATAGGCTTAGCAGCAGTTATCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCAGGGAATAAGCTCAGCTCATATAGGCTTAGCAGCAGTTATCT  341

seq1  TTACATGCTAAGCCATCTCTCGAAAAAGATTTTAAATACTGAACACAAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGCTAAGCCATCTCTCGAAAAAGATTTTAAATACTGAACACAAAG  391

seq1  CAGAAAGGAAACTGGCTTACTGTAGCAAAGTCTCAAGAACGGAAAGAATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGAAACTGGCTTACTGTAGCAAAGTCTCAAGAACGGAAAGAATA  441

seq1  AACACACACTGAGGCTGGCGCAAGGGCTACAACCCGATGGCCTGAGGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACACTGAGGCTGGCGCAAGGGCTACAACCCGATGGCCTGAGGTAG  491

seq1  AGACAGAGACCTGACTCTCCAAAGCTGCCCCTTGGCCACACCAAGCCCCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGACCTGACTCTCCAAAGCTGCCCCTTGGCCACACCAAGCCCCA  541

seq1  TATACATGAATTAAGTGTAATGACAATAACAATTCTTAAAGAAACATGCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGAATTAAGTGTAATGACAATAACAATTCTTAAAGAAACATGCT  591

seq1  CAGTTCTAAAGAAGATTATACCTAAGTCCTAGCTTCAAGGACCATATCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTAAAGAAGATTATACCTAAGTCCTAGCTTCAAGGACCATATCAG  641

seq1  AGCTTGGAGCAAGCACAAGTCTGCATTCTACCAAGAGCTGGCAAGGTAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAGCAAGCACAAGTCTGCATTCTACCAAGAGCTGGCAAGGTAAA  691

seq1  AGATTATGGTGTAATAAATGTTCATATACTTACAAATCGTCTTTCTGCAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGGTGTAATAAATGTTCATATACTTACAAATCGTCTTTCTGCAG  741

seq1  GTTTCTTGACATTGATTGGATTTGATGCCATATCAGGTAAAATAGCTGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGACATTGATTGGATTTGATGCCATATCAGGTAAAATAGCTGCA  791

seq1  ATGAGCTCCCCAGATATATCTCCTGCAGCTACTGTCCCAAGCCAGTCTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTCCCCAGATATATCTCCTGCAGCTACTGTCCCAAGCCAGTCTGA  841

seq1  ACCTGAAAGACTCTTCATAGGAAAAGACATATTTATTTCACCTGTCCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGACTCTTCATAGGAAAAGACATATTTATTTCACCTGTCCACT  891

seq1  CATTCATTCCTGTGATAATGACTATATAGTCTGATGTTGAGGAGAGAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCCTGTGATAATGACTATATAGTCTGATGTTGAGGAGAGAGAT  941

seq1  ACAAAAACCCAATTCTTGTCCCTAATGATGCAGTTACCATATACCTGCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCCAATTCTTGTCCCTAATGATGCAGTTACCATATACCTGCTC  991

seq1  CTCCCTGTGCCCTGAATGGTGCTCTGTGTTACTGTCTGCTCCTGACTTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTGCCCTGAATGGTGCTCTGTGTTACTGTCTGCTCCTGACTTAC  1041

seq1  TACAGTAAACAATTGATCATTTCCGCATACTGAAGCTCGGGAAAGGAGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAACAATTGATCATTTCCGCATACTGAAGCTCGGGAAAGGAGAG  1091

seq1  GCTCACCCAGACAGTGCCTTTTCGCGGAGCAGTAAAGTAGGCCTTAAAAC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCCAGACAGTGCCTTTTCGCGGAGCAGTAAAGTAGGCCTTAAAAC  1141

seq1  CGAGGTAACCGGCATCAATGTAATGAATTC  1175
      ||||||||||||||||||||||||||||||
seq2  CGAGGTAACCGGCATCAATGTAATGAATTC  1171

seq1: chr5_31368788_31369840
seq2: B6Ng01-320A10.g_67_1154

seq1  GAATTCTCTGTAACAAGCCCTAGCTGTCCTGAAGTTCGCTTTGTAGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAACAAGCCCTAGCTGTCCTGAAGTTCGCTTTGTAGATCA  50

seq1  GACTGGCCTCAGACTCACAGAGATCTGCCTACCTCTGTCTCCTGAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCCTCAGACTCACAGAGATCTGCCTACCTCTGTCTCCTGAGTGCT  100

seq1  GGGATTCAAGGCATGCACCACCATGCTCAGCTTGCTTTTAGGTTTCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCAAGGCATGCACCACCATGCTCAGCTTGCTTTTAGGTTTCTTAA  150

seq1  TGGTGAAGCAAGCTTCGTAAGACACCACCACCATGGGCCTTGAGAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCAAGCTTCGTAAGACACCACCACCATGGGCCTTGAGAACCTT  200

seq1  CCAAAGATCAAGTGACTGCCATGAGTGTGTTGGGTATCCCCACGTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATCAAGTGACTGCCATGAGTGTGTTGGGTATCCCCACGTCTACC  250

seq1  TGCCCTCCATCCCATTCTTCCAGGCGAGGTCATGGGCATCGGGCGGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCATCCCATTCTTCCAGGCGAGGTCATGGGCATCGGGCGGTCCT  300

seq1  TTGAGGAGGCCTTCCAAAAGGCCCTGCGCATGGTCGATGAGAACTGCGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGGCCTTCCAAAAGGCCCTGCGCATGGTCGATGAGAACTGCGTA  350

seq1  GGCTTCGACCATACAGTAAAGCCAGTCAGCGACATGGTAAGCAGCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGACCATACAGTAAAGCCAGTCAGCGACATGGTAAGCAGCTCTCC  400

seq1  TCTCCAAAAGCACCCTGACTTGGGCCCTGCTCCATACCACCCCTTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAAGCACCCTGACTTGGGCCCTGCTCCATACCACCCCTTGGCTG  450

seq1  GTTGACAGTAATGGCAGCATCGTTCACATGATTTACTATTCCTTATTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGTAATGGCAGCATCGTTCACATGATTTACTATTCCTTATTTCC  500

seq1  CTGGCTGTATTTTTTTCCACCCCGGCACTGCCCTGCATCCAGCCGTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTATTTTTTTCCACCCCGGCACTGCCCTGCATCCAGCCGTCTGT  550

seq1  GCTCTTCCCCCAACAGGAGCTGGAGACTCCGACGGATAAGCGGATCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCCCCAACAGGAGCTGGAGACTCCGACGGATAAGCGGATCTTTG  600

seq1  TGGTGGCTGCCGCTCTGTGGGCTGGCTACTCTGTGGAGCGCCTCTACGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTGCCGCTCTGTGGGCTGGCTACTCTGTGGAGCGCCTCTACGAG  650

seq1  CTCACCCGCATTGATTGCTGGTTCCTGCACCGGATGAAGCGCATTGTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCGCATTGATTGCTGGTTCCTGCACCGGATGAAGCGCATTGTGAC  700

seq1  CCACGCCCAGTTGCTGGAACAACACCGTGGACAAGCTTTACCCCAAGACC  750
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCCCCGTTGCTGGAACAACACCGTGGACAAGCTTTACCCCAAGACC  750

seq1  TGCTGCACCA-GGCCAAGTGCCTCGGCTTCTCAGACAAGCAGATTGCCCT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACCAGGGCCAAGTGCCTCGGCTTCTCAGACAAGCAGATTGCCCT  800

seq1  GGCAGTCCTGAGGTCAGAGATGGTGGTGTGGGGAGGGAGCTTTTGCCTCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGCAGTCCTGAGGTCAGAGATGGTGGTGTGGGGAGGGAGCTTTTGCCTC-  849

seq1  GGAGGCCCATTGG-AGGGGAGCCTTGGAAGTTCTTCTCTTCA-TCTG-CC  896
      ||||||||||||| ||||||||| |||||||||||||||||| |||| ||
seq2  GGAGGCCCATTGGAAGGGGAGCCATGGAAGTTCTTCTCTTCATTCTGCCC  899

seq1  CATAGGCTGTTTCCTTGCTAACCCTGCCCTAGCGCTTG--CCTAAGTCAG  944
      |||||||||||||||||||||| ||| |||||||||||  | ||||||||
seq2  CATAGGCTGTTTCCTTGCTAACACTG-CCTAGCGCTTGGCCTTAAGTCAG  948

seq1  TCT-ATACTCCATTCCCACATCTGGTCTTTCCCTTCCTTTAGCACAGAGC  993
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACTCCATTCCCACATCTGGTCTTTCCCTTCCTTTAGCACAGAGC  998

seq1  TGG-CTGTT-CGGAAGCTG-CGTCA-GGAACT-GGGGAT-CTGCCCAG-C  1036
      ||| ||||| || |||||| ||||| ||| || |||||| |||||||| |
seq2  TGGCCTGTTCCGTAAGCTGCCGTCAGGGATCTAGGGGATCCTGCCCAGCC  1048

seq1  GGTGAAACA-GATTGACA----------------------  1053
      | ||||||| |||  |||                      
seq2  GTTGAAACATGATGAACACAGCTTGCAAGCCTGATTGACA  1088