BAC Information

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BAC

Clone NameB6Ng01-320K07
Chromosome5 (Build37)
Map Location 80,520,674 - 80,521,850
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320K07.bB6Ng01-320K07.g
ACCGA109961GA109962
length1,161504
definitionB6Ng01-320K07.b B6Ng01-320K07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtagaaatgggtaaatgcatatgagcattacatttgggatata
caatttagaaaagctataagatgtggagttacagtaatgacaatttttgc
aaatggatagccatagtcatcaggagtaactgtctaattcaaagcaaatt
tgagagttttggtcacatagttccatattatatgaaatatattttgtttt
tatggtgcataattccatactatatgaaatgtatgttagtgattttgatg
gtggtactaaatatttaaacttaaacaaaggacaaagttatcaaaacttg
aacatatacttgatattgactacaacaagttattttaaaacattttacat
gaccgtaaatattgcgaaacttcacttatttttacatttctcctttcttt
gaactacatctttctaaatattatatgaaaattctctaaaatatgcattc
taaatttagaatcttgttggttatagagataaaaatcgattggtatagta
tacttacaaagactatttatataatagtgatttccttaaataataattgc
tttctaaatttaggtttgagtttttccattgttgtatttaagattaatta
aaatatacataataatacattataaattgaagtcagttatgataatgata
aagactagttttagtggtgattttaaatgagatattatccttttacagag
tcataatgacatgtctcaattttattttcatccagctgttcaaaaagaac
acaaaatatttcaatgttttataaacatttcattagaatgtgtttaaatt
cactatgaaatttagaaaattgtgggcttagagatgggatagaagaaaga
aaatataaacttaagcctttaggagacttgttgctggtttatcttgatac
ttttagagacatttactttaatattatttatttattttttttgagttttg
atataatggatcatctctcccttcctgttcctgtctaaaagcctctatat
accatatacctctctgtgaaccttcaaatcaatggctttgtcatattatg
ctacatgcatatcttttttattaccactaatggtacctcacaggtatgct
gcgacctcccaacaaacatactactctgtataatattaatacatgcatgg
cacatgactga

tttgtttacctctgagccccatttttaatggggttatttgattttctgga
gttcaccttcttgagttatatatatacacatatatttatgtatatatata
tatatatatatatatatatatatattggattttatatatatattggatta
tatatatatattggatatatatatatatatatatatatatatatatacat
atatataaaaggaaatgatcctagcccaagctgtgggtggctatatatat
atatagatgtttatagagggggatagagggggatacaaagagggagatat
atttatatagaattagatatatatatatacagatcattgttgttctactc
agaattttccccctgtactcatctctttgaggcttttccatactttctcc
tctataagtttcagtgtctctggttttacgtggagttccttaatccactt
aaatttgaccttagtacaaggagataggaatggattaattcactttcttc
taca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80520674_80521850
seq2: B6Ng01-320K07.b_46_1206 (reverse)

seq1  TCAGTCATGGTGCCATGCATAGTATTAATATTATACAGAGTAAGGTATTG  50
      |||||||| ||||||||||| |||||||||||||||||||||  ||| ||
seq2  TCAGTCAT-GTGCCATGCAT-GTATTAATATTATACAGAGTA--GTA-TG  45

seq1  TTTGTTTTGGGAGGTCGCAGCATA-CTGTGGAAGGTACCATTAGT-GTAA  98
      ||||  |||||||||||||||||| |||||  ||||||||||||| ||||
seq2  TTTG--TTGGGAGGTCGCAGCATACCTGTG--AGGTACCATTAGTGGTAA  91

seq1  TAAAAAGATTATGCATGTAGCAATAATTAATGAACAAAGGCCATTGATTT  148
      ||||||   |||||||||||| |||||  ||| ||||| |||||||||||
seq2  TAAAAAAGATATGCATGTAGC-ATAAT--ATG-ACAAA-GCCATTGATTT  136

seq1  GAAAGGGTTCACAGAGAGGTATATGGTATATAGGAGGCTTTTAGACAGGA  198
      |||  ||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAA--GGTTCACAGAGAGGTATATGGTATATA-GAGGCTTTTAGACAGGA  183

seq1  ACAGGAAGGGAGAGATGATCCATTTATATCAAAACTCAAAAAAAATAAAT  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACAGGAAGGGAGAGATGATCCA-TTATATCAAAACTCAAAAAAAATAAAT  232

seq1  AAATAATATTAAAGTAAATGTCTCTAAAAGTATCAAGATAAACCAGCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATATTAAAGTAAATGTCTCTAAAAGTATCAAGATAAACCAGCAAC  282

seq1  AAGTCTCCTAAAGGCTTAAGTTTATATTTTCTTTCTTCTATCCCATCTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTAAAGGCTTAAGTTTATATTTTCTTTCTTCTATCCCATCTCT  332

seq1  AAGCCCACAATTTTCTAAATTTCATAGTGAATTTAAACACATTCTAATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACAATTTTCTAAATTTCATAGTGAATTTAAACACATTCTAATGA  382

seq1  AATGTTTATAAAACATTGAAATATTTTGTGTTCTTTTTGAACAGCTGGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATAAAACATTGAAATATTTTGTGTTCTTTTTGAACAGCTGGAT  432

seq1  GAAAATAAAATTGAGACATGTCATTATGACTCTGTAAAAGGATAATATCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATTGAGACATGTCATTATGACTCTGTAAAAGGATAATATCT  482

seq1  CATTTAAAATCACCACTAAAACTAGTCTTTATCATTATCATAACTGACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAATCACCACTAAAACTAGTCTTTATCATTATCATAACTGACTT  532

seq1  CAATTTATAATGTATTATTATGTATATTTTAATTAATCTTAAATACAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATAATGTATTATTATGTATATTTTAATTAATCTTAAATACAACA  582

seq1  ATGGAAAAACTCAAACCTAAATTTAGAAAGCAATTATTATTTAAGGAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAACTCAAACCTAAATTTAGAAAGCAATTATTATTTAAGGAAAT  632

seq1  CACTATTATATAAATAGTCTTTGTAAGTATACTATACCAATCGATTTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTATATAAATAGTCTTTGTAAGTATACTATACCAATCGATTTTTA  682

seq1  TCTCTATAACCAACAAGATTCTAAATTTAGAATGCATATTTTAGAGAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAACCAACAAGATTCTAAATTTAGAATGCATATTTTAGAGAATT  732

seq1  TTCATATAATATTTAGAAAGATGTAGTTCAAAGAAAGGAGAAATGTAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAATATTTAGAAAGATGTAGTTCAAAGAAAGGAGAAATGTAAAA  782

seq1  ATAAGTGAAGTTTCGCAATATTTACGGTCATGTAAAATGTTTTAAAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGAAGTTTCGCAATATTTACGGTCATGTAAAATGTTTTAAAATAA  832

seq1  CTTGTTGTAGTCAATATCAAGTATATGTTCAAGTTTTGATAACTTTGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTAGTCAATATCAAGTATATGTTCAAGTTTTGATAACTTTGTCC  882

seq1  TTTGTTTAAGTTTAAATATTTAGTACCACCATCAAAATCACTAACATACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAGTTTAAATATTTAGTACCACCATCAAAATCACTAACATACA  932

seq1  TTTCATATAGTATGGAATTATGCACCATAAAAACAAAATATATTTCATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATAGTATGGAATTATGCACCATAAAAACAAAATATATTTCATAT  982

seq1  AATATGGAACTATGTGACCAAAACTCTCAAATTTGCTTTGAATTAGACAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAACTATGTGACCAAAACTCTCAAATTTGCTTTGAATTAGACAG  1032

seq1  TTACTCCTGATGACTATGGCTATCCATTTGCAAAAATTGTCATTACTGTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTGATGACTATGGCTATCCATTTGCAAAAATTGTCATTACTGTA  1082

seq1  ACTCCACATCTTATAGCTTTTCTAAATTGTATATCCCAAATGTAATGCTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACATCTTATAGCTTTTCTAAATTGTATATCCCAAATGTAATGCTC  1132

seq1  ATATGCATTTACCCATTTCTACTGAATTC  1177
      |||||||||||||||||||||||||||||
seq2  ATATGCATTTACCCATTTCTACTGAATTC  1161


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