BAC Information

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BAC

Clone NameB6Ng01-320K12
Chromosome5 (Build37)
Map Location 91,491,081 - 91,492,193
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn
Downstream geneEreg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320K12.bB6Ng01-320K12.g
ACCGA109971GA109972
length1,1121,147
definitionB6Ng01-320K12.b B6Ng01-320K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaactacaaattataggaagagacggaaattacatttggacaa
ggctgtcctatatcaggtggtgatcagacatgagaacgttaataattatt
gcagtcgtgattcctaatgcattagccataaggtcattatctcaactagc
tcctggaccagttttgttagacacttgggatgcaaatttagatccaatag
aagagaagagtgacccattaaccaatcctcttaacactacttctcaacat
ccatcagcactgcccagaaatgtttctcaaaacatggtgctactgaagac
tccatagcattccaaagaatgtttagatccatggtcataggctagatgaa
tcattctgaaaaagtgctgtgcagccagagatgagaaaaaatattgacac
tctttccactggtcattcagcaattagaagctgagagcatatgtaattca
cagaaaaaattccaatcccatttgatgtctgtaacatgaaaatatgagat
gatattgaaacctgaagtaagccctatgaagtcagtaggttcccatcccc
cctcaacaaactactgtctggatcctacagatttgctataaaatttgtat
ttcacttagtgaaatcttaaaatgtatttaaaatgtattttaagatttca
tttaagccttccttgaatcacgtgttacttggaaatgtgctcattgcaaa
gtatttgaggattgcccagttatctttttgttgttaatttcaagattaat
ctgatgtccattttaagtactccaaagtcataatagattgtgatcactct
ccccacctagattttgttttgatgaatatttcaaacacatgtctgcagtt
aacagatatattttgtaaatgtcaattagatcactttgagtgatagtgct
cttaaggtactaatgtcagtgaactctcagaaatacacatagatgtgtct
gtatatttccctgatctctaaatttattggctataacaaatgcacaaggt
agttctgttgggagcatttgtgattatattatagttggtgatttcccttg
atatggaattaggccaaaacctgttcttattcaaatgctgtgaataaatg
cagttattttat
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattttaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggtg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggtggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactgttatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacaactggttgttatcgtgtagaagaatgcgaatcgatccatacttatc
tcttgtactaggtcaatctagtgattcagacttcacataaacagagacac
tgaacttatagagagaaagtgggaaaggctgagaaatgccaagagattcc
tgaacgaacagcatggcctggggtctgtaagaattcgggagaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_91491081_91492193
seq2: B6Ng01-320K12.b_50_1161 (reverse)

seq1  ATAAAATAACTGCATTTATCAACAGCCATTTG-ATA--GACA-GTTTTGC  46
      |||||||||||||||||||  |||| |||||| |||   ||| |||||| 
seq2  ATAAAATAACTGCATTTATTCACAG-CATTTGAATAAGAACAGGTTTTGG  49

seq1  CTTAATTCCCATTATCAAGGGAAATCACC-ACTAT-ATATAATTCACCAA  94
      | |||||||   ||||||||||||||||| ||||| |||||| ||||  |
seq2  CCTAATTCC--ATATCAAGGGAAATCACCAACTATAATATAA-TCAC--A  94

seq1  ATTGCTCCCAACAGAACTACCTTGTGCATTTGTTATTAGCCAATAAATTT  144
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATGCTCCCAACAGAACTACCTTGTGCATTTGTTA-TAGCCAATAAATTT  143

seq1  AGAGATCAGGGAAATATACAGACACATCTATGTGTATTTCTGAGAGTTCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCAGGGAAATATACAGACACATCTATGTGTATTTCTGAGAGTTCA  193

seq1  CTGACATTAGTACCTTAAGAGCACTATCACTCAAAGTGATCTAATTGACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTAGTACCTTAAGAGCACTATCACTCAAAGTGATCTAATTGACA  243

seq1  TTTACAAAATATATCTGTTAACTGCAGACATGTGTTTGAAATATTCATCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAATATATCTGTTAACTGCAGACATGTGTTTGAAATATTCATCA  293

seq1  AAACAAAATCTAGGTGGGGAGAGTGATCACAATCTATTATGACTTTGGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATCTAGGTGGGGAGAGTGATCACAATCTATTATGACTTTGGAG  343

seq1  TACTTAAAATGGACATCAGATTAATCTTGAAATTAACAACAAAAAGATAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAAATGGACATCAGATTAATCTTGAAATTAACAACAAAAAGATAA  393

seq1  CTGGGCAATCCTCAAATACTTTGCAATGAGCACATTTCCAAGTAACACGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATCCTCAAATACTTTGCAATGAGCACATTTCCAAGTAACACGT  443

seq1  GATTCAAGGAAGGCTTAAATGAAATCTTAAAATACATTTTAAATACATTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGGAAGGCTTAAATGAAATCTTAAAATACATTTTAAATACATTT  493

seq1  TAAGATTTCACTAAGTGAAATACAAATTTTATAGCAAATCTGTAGGATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTCACTAAGTGAAATACAAATTTTATAGCAAATCTGTAGGATCC  543

seq1  AGACAGTAGTTTGTTGAGGGGGGATGGGAACCTACTGACTTCATAGGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAGTTTGTTGAGGGGGGATGGGAACCTACTGACTTCATAGGGCT  593

seq1  TACTTCAGGTTTCAATATCATCTCATATTTTCATGTTACAGACATCAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGGTTTCAATATCATCTCATATTTTCATGTTACAGACATCAAAT  643

seq1  GGGATTGGAATTTTTTCTGTGAATTACATATGCTCTCAGCTTCTAATTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGAATTTTTTCTGTGAATTACATATGCTCTCAGCTTCTAATTGC  693

seq1  TGAATGACCAGTGGAAAGAGTGTCAATATTTTTTCTCATCTCTGGCTGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACCAGTGGAAAGAGTGTCAATATTTTTTCTCATCTCTGGCTGCA  743

seq1  CAGCACTTTTTCAGAATGATTCATCTAGCCTATGACCATGGATCTAAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTTTTCAGAATGATTCATCTAGCCTATGACCATGGATCTAAACA  793

seq1  TTCTTTGGAATGCTATGGAGTCTTCAGTAGCACCATGTTTTGAGAAACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGAATGCTATGGAGTCTTCAGTAGCACCATGTTTTGAGAAACAT  843

seq1  TTCTGGGCAGTGCTGATGGATGTTGAGAAGTAGTGTTAAGAGGATTGGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCAGTGCTGATGGATGTTGAGAAGTAGTGTTAAGAGGATTGGTT  893

seq1  AATGGGTCACTCTTCTCTTCTATTGGATCTAAATTTGCATCCCAAGTGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTCACTCTTCTCTTCTATTGGATCTAAATTTGCATCCCAAGTGTC  943

seq1  TAACAAAACTGGTCCAGGAGCTAGTTGAGATAATGACCTTATGGCTAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAACTGGTCCAGGAGCTAGTTGAGATAATGACCTTATGGCTAATG  993

seq1  CATTAGGAATCACGACTGCAATAATTATTAACGTTCTCATGTCTGATCAC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAATCACGACTGCAATAATTATTAACGTTCTCATGTCTGATCAC  1043

seq1  CACCTGATATAGGACAGCCTTGTCCAAATGTAATTTCCGTCTCTTCCTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATATAGGACAGCCTTGTCCAAATGTAATTTCCGTCTCTTCCTAT  1093

seq1  AATTTGTAGTTTGGAATTC  1113
      |||||||||||||||||||
seq2  AATTTGTAGTTTGGAATTC  1112