BAC Information

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BAC

Clone NameB6Ng01-320K14
Chromosome5 (Build37)
Map Location 101,908,867 - 102,050,298
singlet/doubletdoublet
Overlap geneLOC100040920
Upstream geneLin54, Cops4, Plac8, Coq2, Hpse, Hel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2
Downstream geneNkx6-1, Cds1, Wdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320K14.bB6Ng01-320K14.g
ACCGA109975GA109976
length1,1591,039
definitionB6Ng01-320K14.b B6Ng01-320K14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,908,867 - 101,910,054)(102,049,286 - 102,050,298)
sequence
gaattctacaaaaagcagagatagtgagaaagcagtggacaactctatca
ggcaatgtcttacttcctataatcctgtaaacaagaaacttgtagtttct
ccttctcttctccttaagctatcatgcctgagctgagtgtggtttgtgtc
ctagaaaaagactactaaattatatttcagcgtcacaatgtgaaaaccca
acattaagcttatatatgtctctgctcacttctacaagtagaactctgaa
atactccatattccccaataacaaagttgccaataacctcttactcattt
gtttccatggttttttttccatataaagtttcctttgtaatctacaagct
caatatcaactctaatatggcaaaattaggtgtgcagagcgacataatga
ctccttttctttctctgttgtctaatcattagagctaactcaatgtcgca
tgtagatctccagttaggccttgagccactataacctctttgcctctgtt
tccagtgtgtttgccaggcttaggtgctatgaaaagtaaatttcacatga
gaccctttactacagagatagatatgtaagtatcctaaggctggaggcat
ggaagacgtggagacgtgtgaagccagcacgagattctgaacttggattc
ccagaacccacatgaagccagacatggtaacacaagtctgtcaggagaat
ccctagaagttttcaggccaccctgtcctggtatattcaggggcaaacag
caaagaggccctgtctcaaacaagacgaaaggagagaaccaacactggac
gatgtcctttgacctcctcatgcatgtccgggcatgtgggcaccttcagt
cacccacgaacacatacataatacacatgcacaaatctagttagtaaaag
ttgatgtgactccaggcaatgtagaaataaaagaatatttgaggttgggg
tggggaatacccatatatttcccctcatccttgagaaagcaaagtgtttc
agaaagagggccagtgacgcagcagatcccagcagcccagtcccacacag
tgtgctgctctactccacatgcagtctgggggccggggagtaattccaac
tctcttaagatgatctgaatcacatacacgaatgaactcgaaggttttct
agaggtgac
gaattccaaagataagaagaagtaagagctaggaggaggccctagagaag
ctgagatagcctcagctggtggcttctttgaatatggagagcaagtctgg
tgggcagcagtgagcaaggaagaggattctgagttttagttcatccaacg
ataagcctttccagatttcactaggtctgttaaatgtagaaattgtccag
aacaaccaaagaccatttctagattatgaagacagtcattaaaattgttt
tatttttatgtgtgcagttttgtggatgtaagcggaggtgcccatggagt
ccagagatgttggatcccttgggatctggcgtcagaagcctgtgacgtgg
gtgctgagaactgcgctcgagtcctctactagagtagtgtgggctctgaa
ctgctgagccaccactccagtcccggacgacgggtgtcctcacagagaca
gacagtagattagatggctccccatgagttcactgttgccatgtcttcag
cacagagaggaccaagtgacatggagtccaggaaggctgacagccaacct
taaattacttcacagtgtatgatctttgcatctatagactggcgacaatt
gcccataactcatattgattcataccaggcagtgcactgaacatacaatt
aatagttgactccgttggcggccagctgttactgccataatttactacga
gaatggtttgatctagatgatacaggaattatactgggaactgtattctt
taagcatttaaaggtcagacccaacctctttattaatttagtccgaggtt
cagtttcattttaaggaaaggattttgtgcctgatgcggagttctcctcg
taatgctaatggggaggctaaagctagcaaaaaatctcatattctttgac
ttttaaagttccctttgaatgaaaaacccaatgaacagcccagaattttg
ggaatgggtacccccatcattttaggatctttcttgggagaacttttcag
aagtcctaaaaaagtaagacgggagagaagttcctttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_101908867_101910054
seq2: B6Ng01-320K14.b_45_1203

seq1  GAATTCTACAAAAAGCAGAGATAGTGAGAAAGCAGTGGACAACTCTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAAAGCAGAGATAGTGAGAAAGCAGTGGACAACTCTATCA  50

seq1  GGCAATGTCTTACTTCCTATAATCCTGTAAACAAGAAACTTGTAGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTCTTACTTCCTATAATCCTGTAAACAAGAAACTTGTAGTTTCT  100

seq1  CCTTCTCTTCTCCTTAAGCTATCATGCCTGAGCTGAGTGTGGTTTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTTCTCCTTAAGCTATCATGCCTGAGCTGAGTGTGGTTTGTGTC  150

seq1  CTAGAAAAAGACTACTAAATTATATTTCAGCGTCACAATGTGAAAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAGACTACTAAATTATATTTCAGCGTCACAATGTGAAAACCCA  200

seq1  ACATTAAGCTTATATATGTCTCTGCTCACTTCTACAAGTAGAACTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAGCTTATATATGTCTCTGCTCACTTCTACAAGTAGAACTCTGAA  250

seq1  ATACTCCATATTCCCCAATAACAAAGTTGCCAATAACCTCTTACTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCATATTCCCCAATAACAAAGTTGCCAATAACCTCTTACTCATTT  300

seq1  GTTTCCATGGTTTTTTTTCCATATAAAGTTTCCTTTGTAATCTACAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATGGTTTTTTTTCCATATAAAGTTTCCTTTGTAATCTACAAGCT  350

seq1  CAATATCAACTCTAATATGGCAAAATTAGGTGTGCAGAGCGACATAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCAACTCTAATATGGCAAAATTAGGTGTGCAGAGCGACATAATGA  400

seq1  CTCCTTTTCTTTCTCTGTTGTCTAATCATTAGAGCTAACTCAATGTCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTTTCTCTGTTGTCTAATCATTAGAGCTAACTCAATGTCGCA  450

seq1  TGTAGATCTCCAGTTAGGCCTTGAGCCACTATAACCTCTTTGCCTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCTCCAGTTAGGCCTTGAGCCACTATAACCTCTTTGCCTCTGTT  500

seq1  TCCAGTGTGTTTGCCAGGCTTAGGTGCTATGAAAAGTAAATTTCACATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTGTTTGCCAGGCTTAGGTGCTATGAAAAGTAAATTTCACATGA  550

seq1  GACCCTTTACTACAGAGATAGATATGTAAGTATCCTAAGGCTGGAGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTACTACAGAGATAGATATGTAAGTATCCTAAGGCTGGAGGCAT  600

seq1  GGAAGACGTGGAGACGTGTGAAGCCAGCACGAGATTCTGAACTTGGATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACGTGGAGACGTGTGAAGCCAGCACGAGATTCTGAACTTGGATTC  650

seq1  CCAGAACCCACATGAAGCCAGACATGGTAACACAAGTCTGTCAGGAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCCACATGAAGCCAGACATGGTAACACAAGTCTGTCAGGAGAAT  700

seq1  CCCTAGAAGTTTTCAGGCCACCCTGTCCTGGTATATTCAGGGGCAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGAAGTTTTCAGGCCACCCTGTCCTGGTATATTCAGGGGCAAACAG  750

seq1  CAAAGAGGCCCTGTCTCAAACAAGACGAAAGGAGAGAACCAACACTGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGCCCTGTCTCAAACAAGACGAAAGGAGAGAACCAACACTGGAC  800

seq1  GATGTCCTTTGACCTCCTCATGCATGTCCGGGCATGTGGGCACCTTCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTTTGACCTCCTCATGCATGTCCGGGCATGTGGGCACCTTCAGT  850

seq1  CACCCACGAACACATACATAATACACATGCACAAAATCTAGTTAGTAAAA  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACCCACGAACACATACATAATACACATGCAC-AAATCTAGTTAGTAAAA  899

seq1  GTTGATGTGACTCCAGGCAATGTAGAAATAAAAGAATATTTTGAGGTT-G  949
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  GTTGATGTGACTCCAGGCAATGTAGAAATAAAAGAATA-TTTGAGGTTGG  948

seq1  GGTGGGGAATACCCATATATTTCCCCTCATCCTTGAGAAAAGGCAAAGGT  999
      ||||||||||||||||||||||||||||||||||||||||  ||||| ||
seq2  GGTGGGGAATACCCATATATTTCCCCTCATCCTTGAGAAA--GCAAA-GT  995

seq1  GTTTCAAGAAAGAGGGCCAGTGACGCCAAGGCAGATCCCAGCAGCCCCAG  1049
      ||||| ||||||||||||||||||||    |||||||||||||| |||||
seq2  GTTTC-AGAAAGAGGGCCAGTGACGC---AGCAGATCCCAGCAG-CCCAG  1040

seq1  TCCCACACAGTGTGGCTTGCTCTACTCCACATTGCAGTTCTGGGGGGGCG  1099
      ||||||||||||||   |||||||||||||| ||||| ||||||||    
seq2  TCCCACACAGTGTG--CTGCTCTACTCCACA-TGCAG-TCTGGGGG---C  1083

seq1  GGGGGAGTTTAATTCATACTTCTCCTTAAGTATGATTCTGAGATCAACCA  1149
       ||||||  ||||||  || ||| |||||| |||| ||||| ||||  ||
seq2  CGGGGAG--TAATTCCAAC-TCT-CTTAAG-ATGA-TCTGA-ATCA--CA  1124

seq1  TACACAGAAATGAAACTTCAGAATGTTTTCTAGA-GTGAC  1188
      |||||   |||| ||||   ||| |||||||||| |||||
seq2  TACAC--GAATG-AACT--CGAAGGTTTTCTAGAGGTGAC  1159

seq1: chr5_102049286_102050298
seq2: B6Ng01-320K14.g_69_1107 (reverse)

seq1  CCAAAGGGAC-TCTCTCCCGTCTTACTCTCTGA-GAC-TCTG-AAAGTTC  46
      ||||||| || |||||||||||||||| | | | ||| |||| |||||||
seq2  CCAAAGGAACTTCTCTCCCGTCTTACTTTTTTAGGACTTCTGAAAAGTTC  50

seq1  T-CCAAG-AATATCCTAAAATATT--GTGTACCCATTCC---AAATCT-G  88
      | ||||| || ||||||||||  |  | |||||||||||   || ||| |
seq2  TCCCAAGAAAGATCCTAAAATGATGGGGGTACCCATTCCCAAAATTCTGG  100

seq1  GCT-TTCATTGGCTATTACAATCAAAAGGAACTTT-AAAGTCAAAG-ATA  135
      ||| |||||||| | || || ||||| |||||||| |||||||||| |||
seq2  GCTGTTCATTGGGTTTTTCATTCAAAGGGAACTTTAAAAGTCAAAGAATA  150

seq1  TGAGA-TTTTTGCTAAGCTTAGCCT-CCCATTAGCA-TACGA-GAG-ACT  180
      ||||| |||||||||   ||||||| |||||||||| ||||| ||| |||
seq2  TGAGATTTTTTGCTAGCTTTAGCCTCCCCATTAGCATTACGAGGAGAACT  200

seq1  CCGCATCA-GCAC-AAATCCTTTCCT--AAATGAAACTGAACCTCGGACT  226
      |||||||| |||| ||||||||||||  ||||||||||||||||||||||
seq2  CCGCATCAGGCACAAAATCCTTTCCTTAAAATGAAACTGAACCTCGGACT  250

seq1  AAATTAAT-AAGA-GTTGGGTCTGACCTTTAAAATGC-TAAAGAATACAG  273
      |||||||| |||| |||||||||||||||| |||||| ||||||||||||
seq2  AAATTAATAAAGAGGTTGGGTCTGACCTTT-AAATGCTTAAAGAATACAG  299

seq1  TTCCCAGTATAATTCCTGT-TCATCCTAGATCAAACCATTCTCGTAGTAA  322
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  TTCCCAGTATAATTCCTGTATCAT-CTAGATCAAACCATTCTCGTAGTAA  348

seq1  ATTATGGCAGTAACAGCTGGCCGCCAACGGAGTCAACTATTAATTGTATG  372
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGGCAGTAACAGCTGGCCGCCAACGGAGTCAACTATTAATTGTATG  398

seq1  TTCAGTGCACTGCCTGGTATGAATCAATATGAGTTATGGGCAATTGTCGC  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCACTGCCTGGTATGAATCAATATGAGTTATGGGCAATTGTCGC  448

seq1  CAGTCTATAGATGCAAAGATCATACACTGTGAAGTAATTTAAGGTTGGCT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATAGATGCAAAGATCATACACTGTGAAGTAATTTAAGGTTGGCT  498

seq1  GTCAGCCTTCCTGGACTCCATGTCACTTGGTCCTCTCTGTGCTGAAGACA  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTCCTGGACTCCATGTCACTTGGTCCTCTCTGTGCTGAAGACA  548

seq1  TGGCAACAGTGAACTCATGGGGAGCCATCTAATCTACTGTCTGTCTCTGT  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAGTGAACTCATGGGGAGCCATCTAATCTACTGTCTGTCTCTGT  598

seq1  GAGGACACCCGTCGTCCGGGACTGGAGTGGTGGCTCAGCAGTTCAGAGCC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACCCGTCGTCCGGGACTGGAGTGGTGGCTCAGCAGTTCAGAGCC  648

seq1  CACACTACTCTAGTAGAGGACTCGAGCGCAGTTCTCAGCACCCACGTCAC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTACTCTAGTAGAGGACTCGAGCGCAGTTCTCAGCACCCACGTCAC  698

seq1  AGGCTTCTGACGCCAGATCCCAAGGGATCCAACATCTCTGGACTCCATGG  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTGACGCCAGATCCCAAGGGATCCAACATCTCTGGACTCCATGG  748

seq1  GCACCTCCGCTTACATCCACAAAACTGCACACATAAAAATAAAACAATTT  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCCGCTTACATCCACAAAACTGCACACATAAAAATAAAACAATTT  798

seq1  TAATGACTGTCTTCATAATCTAGAAATGGTCTTTGGTTGTTCTGGACAAT  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTGTCTTCATAATCTAGAAATGGTCTTTGGTTGTTCTGGACAAT  848

seq1  TTCTACATTTAACAGACCTAGTGAAATCTGGAAAGGCTTATCGTTGGATG  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATTTAACAGACCTAGTGAAATCTGGAAAGGCTTATCGTTGGATG  898

seq1  AACTAAAACTCAGAATCCTCTTCCTTGCTCACTGCTGCCCACCAGACTTG  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAACTCAGAATCCTCTTCCTTGCTCACTGCTGCCCACCAGACTTG  948

seq1  CTCTCCATATTCAAAGAAGCCACCAGCTGAGGCTATCTCAGCTTCTCTAG  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATATTCAAAGAAGCCACCAGCTGAGGCTATCTCAGCTTCTCTAG  998

seq1  GGCCTCCTCCTAGCTCTTACTTCTTCTTATCTTTGGAATTC  1013
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCCTAGCTCTTACTTCTTCTTATCTTTGGAATTC  1039