BAC Information

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BAC

Clone NameB6Ng01-320N11
Chromosome5 (Build37)
Map Location 132,463,651 - 132,561,301
singlet/doubletdoublet
Overlap geneAuts2
Upstream geneWbscr17, 4930563F08Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N11.bB6Ng01-320N11.g
ACCGA110106GA110107
length1,1171,115
definitionB6Ng01-320N11.b B6Ng01-320N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,463,651 - 132,464,788)(132,560,196 - 132,561,301)
sequence
gaattctgtgttcggattgcttgtttcccatatgtattcattcattcaca
gatgtgcatatacaaagacaatgtcaagtcatattcgtaaaacaaggaac
aagcaagagccaggtcagtcagccacgttcttctgttcgagtcaggagac
gacaataaatgtaaacttcattgtgtcatcaggatgtagctgacctggct
ccaattcttgccatgtgatttttttttttaatgaaggggctctgctacaa
tcagggaagatggttcccacaaagagcaactgagaaaatgagacttctaa
ttaaagacctttccaatacaattcctacaagtgtaagttaagtacagtgc
actttaaaggacactgcaaaaacagtacttacacattcattattgaatgc
tcttaatgccactgaacattaagaaacgaagcagttagattacctgaata
aagtctaatacctccagtgagatatccggggtctgaggcagagaattctc
tgtgtttaaactgatagaggttagggcatactaccatacccctaaaatgt
atcaccctcacacagggataacagaagcaggaagagctctctgaccttct
gcactccctatcctctatgcagcaagccataaaaacctaaagagaatttt
ctgaacttccaatgaaggagacatgagaccctcttgtgaacaacaccttg
aatgctgagaagaaaggcccatccctacctcggaagagaaatgatcccag
aaaagacccaaggaccaagcagtcttgcaacatcactgagagtagatcac
acacaccccacctcacccctctgtccattctaatttctccaagactgtct
accttacatcagactcacatgtcaaggttgggacatggctcagctgttag
agcacttgcatagcattcattaatacctaggttccgtccccagcactgta
cagcatatgtacacagtggatcacctcagcaggagtcgaaagcagacgat
cagaaattcaagtcatacacgggacagtaagtttgagcagcctgggctac
atgagaacctgtttcaaatgagttacccaagaatagatagagcctctcag
tttccttcacatgaaat

gaattcatctatttgtggttttctataaagacctaattcatgaggagtag
gtattggtggcagggcagagccttttttatatacattggctctgaaaagt
aattcagtaaccagaaaatcgtaaatgtcccaaaaacctcattacgtaag
caagatcagaaaatataagacactgacctcaaaaggaataattaaggtta
tgaagctaaatttatttccccttcaccagctgagaaagtacattttcatg
agatggctggttgacaataacttcttggtgagatttggtggtgaagagta
ttttgttgaacttatttcattttatatttacatttttgttgatgcagagt
ctcttgacgttgctcagtgtgacctagaattcttgatcctcctgcctcaa
tcctttgtgcactcaactacagacatcactgcagtgctttgactgtttta
taaactagggtggctactttttgcaggtagaatcataaggtgtctgataa
ctctgaaaattggtttttgtaaatagaaatctgaatttagttaatgcagt
ggtcagtatatagaagaagaatcctcttgactgatgtcgactttagacag
tgttgaaaattggttaatattagagccgttgtggctcttacagacgacca
gagttcagttctcagcacctaatagatgatgcttcacaactgcctgtaag
tccacctctgtgagattccctctttccagctctgaggacactgtgtcaaa
atgtaaaatacacacacacacacacacacacacacacacacacacaaaca
cacacatacacacacacactgcacacacacacacaattaaaaataaaatc
agtttttttaaaaagagacaaaatgaaagtaagatttctgtgagttatgt
gtagttcctctgatcgcttgtctggttttatgtggcatgtgcatgtatat
gtgaacagagggaaagacaattagaaaaaaaaaatagttacctgcttcca
ggatccattacataaaatagtattattaatcctgagtgaagtaagaatgt
acctatataaaaactaaaatgttttctctagccctggtctggattccatg
ccttgaaattgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_132463651_132464788
seq2: B6Ng01-320N11.b_48_1164

seq1  GAATTCTGTGTTCGGATTGCTTGTTTCCCATATGTATTCATTCATTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTCGGATTGCTTGTTTCCCATATGTATTCATTCATTCACA  50

seq1  GATGTGCATATACAAAGACAATGTCAAGTCATATTCGTAAAACAAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCATATACAAAGACAATGTCAAGTCATATTCGTAAAACAAGGAAC  100

seq1  AAGCAAGAGCCAGGTCAGTCAGCCACGTTCTTCTGTTCGAGTCAGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGAGCCAGGTCAGTCAGCCACGTTCTTCTGTTCGAGTCAGGAGAC  150

seq1  GACAATAAATGTAAACTTCATTGTGTCATCAGGATGTAGCTGACCTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAAATGTAAACTTCATTGTGTCATCAGGATGTAGCTGACCTGGCT  200

seq1  CCAATTCTTGCCATGTGATTTTTTTTTTTAATGAAGGGGCTCTGCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTTGCCATGTGATTTTTTTTTTTAATGAAGGGGCTCTGCTACAA  250

seq1  TCAGGGAAGATGGTTCCCACAAAGAGCAACTGAGAAAATGAGACTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAGATGGTTCCCACAAAGAGCAACTGAGAAAATGAGACTTCTAA  300

seq1  TTAAAGACCTTTCCAATACAATTCCTACAAGTGTAAGTTAAGTACAGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACCTTTCCAATACAATTCCTACAAGTGTAAGTTAAGTACAGTGC  350

seq1  ACTTTAAAGGACACTGCAAAAACAGTACTTACACATTCATTATTGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGGACACTGCAAAAACAGTACTTACACATTCATTATTGAATGC  400

seq1  TCTTAATGCCACTGAACATTAAGAAACGAAGCAGTTAGATTACCTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGCCACTGAACATTAAGAAACGAAGCAGTTAGATTACCTGAATA  450

seq1  AAGTCTAATACCTCCAGTGAGATATCCGGGGTCTGAGGCAGAGAATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAATACCTCCAGTGAGATATCCGGGGTCTGAGGCAGAGAATTCTC  500

seq1  TGTGTTTAAACTGATAGAGGTTAGGGCATACTACCATACCCCTAAAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAAACTGATAGAGGTTAGGGCATACTACCATACCCCTAAAATGT  550

seq1  ATCACCCTCACACAGGGATAACAGAAGCAGGAAGAGCTCTCTGACCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTCACACAGGGATAACAGAAGCAGGAAGAGCTCTCTGACCTTCT  600

seq1  GCACTCCCTATCCTCTATGCAGCAAGCCATAAAAACCTAAAGAGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCCTATCCTCTATGCAGCAAGCCATAAAAACCTAAAGAGAATTTT  650

seq1  CTGAACTTCCAATGAAGGAGACATGAGACCCTCTTGTGAACAACACCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCCAATGAAGGAGACATGAGACCCTCTTGTGAACAACACCTTG  700

seq1  AATGCTGAGAAGAAAGGCCCATCCCTACCTCGGAAGAGAAATGATCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGAGAAGAAAGGCCCATCCCTACCTCGGAAGAGAAATGATCCCAG  750

seq1  AAAAGACCCAAGGACCAAGCAGGTCTTGCAACATCACTGAGAGTAGATCA  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAGACCCAAGGACCAAGCA-GTCTTGCAACATCACTGAGAGTAGATCA  799

seq1  CACACACCCCACCTCACCCCTCTGTCCATTCTAATTTCTCCAAGACTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCACCTCACCCCTCTGTCCATTCTAATTTCTCCAAGACTGTC  849

seq1  TACCTTACATCAGACTCACATGTCAAGGTTGGGACATGGCTCAGCTGTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTACATCAGACTCACATGTCAAGGTTGGGACATGGCTCAGCTGTTA  899

seq1  GAGCACTTGCATAGCATTCATTAATACCTAGGTTCCGTCCCCAGCACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTGCATAGCATTCATTAATACCTAGGTTCCGTCCCCAGCACTGT  949

seq1  ACAAGCATATGTACACAGGTGGATCACCTCAGCAGGGAGTCGAAAGCAGA  1000
      || |||||||||||||| |||||||||||||||| |||||||||||||| 
seq2  AC-AGCATATGTACACA-GTGGATCACCTCAGCA-GGAGTCGAAAGCAG-  995

seq1  ACGATCAGAAATTCAAGGTCATACACGGGAACAGGTAAAGTTTGAGGCCA  1050
      |||||||||||||||| |||||||||||| ||||   |||||||||  ||
seq2  ACGATCAGAAATTCAA-GTCATACACGGG-ACAG--TAAGTTTGAG--CA  1039

seq1  GCCTGGGCTACATGAGAACCTGTTTCAAAATGAGTTAACCCCAAG-ATAG  1099
      |||||||||||||||||||||||||| ||||||||||  |||||| ||||
seq2  GCCTGGGCTACATGAGAACCTGTTTC-AAATGAGTTA--CCCAAGAATAG  1086

seq1  ATTAGGAAGCCTCTTCAGGTTTCCCTTTCACATGGAAAT  1138
      | |||  |||||| ||| ||||||  ||||||| |||||
seq2  A-TAG--AGCCTC-TCA-GTTTCC--TTCACAT-GAAAT  1117


seq1: chr5_132560196_132561301
seq2: B6Ng01-320N11.g_69_1183 (reverse)

seq1  TCAAC-ATTTC-AGGCATGGAATCCAGAC--AGGCTAGAGAAAACATTTT  46
      ||||| ||||| |||||||||||||||||   ||||||||||||||||||
seq2  TCAACAATTTCAAGGCATGGAATCCAGACCAGGGCTAGAGAAAACATTTT  50

seq1  AG-TTTTATATAGGTACATTCTTAC-TCACTCAGGATTAATAATACTA-T  93
      || |||||||||||||||||||||| |||||||||||||||||||||| |
seq2  AGTTTTTATATAGGTACATTCTTACTTCACTCAGGATTAATAATACTATT  100

seq1  TTATGTAATGGATCCTGGAAGCAGGTAACTA-TTTTTTTTTCTAA-TGTC  141
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TTATGTAATGGATCCTGGAAGCAGGTAACTATTTTTTTTTTCTAATTGTC  150

seq1  TTTCCCTCTGTTCACATATACATGCACATGCCACATAAAACCAGACAAGC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTGTTCACATATACATGCACATGCCACATAAAACCAGACAAGC  200

seq1  GATCAGAGGAACTACACATAACTCACAGAAATCTTACTTTCATTTTGTCT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGGAACTACACATAACTCACAGAAATCTTACTTTCATTTTGTCT  250

seq1  CTTTTTAAAAAAACTGATTTTATTTTTAATTGTGTGTGTGTGTGCAGTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAAAACTGATTTTATTTTTAATTGTGTGTGTGTGTGCAGTGT  300

seq1  GTGTGTGTATGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  350

seq1  GTGTGTATTTTACATTTTGACACAGTGTCCTCAGAGCTGGAAAGAGGGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATTTTACATTTTGACACAGTGTCCTCAGAGCTGGAAAGAGGGAA  400

seq1  TCTCACAGAGGTGGACTTACAGGCAGTTGTGAAGCATCATCTATTAGGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGAGGTGGACTTACAGGCAGTTGTGAAGCATCATCTATTAGGTG  450

seq1  CTGAGAACTGAACTCTGGTCGTCTGTAAGAGCCACAACGGCTCTAATATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTGAACTCTGGTCGTCTGTAAGAGCCACAACGGCTCTAATATT  500

seq1  AACCAATTTTCAACACTGTCTAAAGTCGACATCAGTCAAGAGGATTCTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTTTCAACACTGTCTAAAGTCGACATCAGTCAAGAGGATTCTTC  550

seq1  TTCTATATACTGACCACTGCATTAACTAAATTCAGATTTCTATTTACAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATACTGACCACTGCATTAACTAAATTCAGATTTCTATTTACAAA  600

seq1  AACCAATTTTCAGAGTTATCAGACACCTTATGATTCTACCTGCAAAAAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTTTCAGAGTTATCAGACACCTTATGATTCTACCTGCAAAAAGT  650

seq1  AGCCACCCTAGTTTATAAAACAGTCAAAGCACTGCAGTGATGTCTGTAGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCCTAGTTTATAAAACAGTCAAAGCACTGCAGTGATGTCTGTAGT  700

seq1  TGAGTGCACAAAGGATTGAGGCAGGAGGATCAAGAATTCTAGGTCACACT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCACAAAGGATTGAGGCAGGAGGATCAAGAATTCTAGGTCACACT  750

seq1  GAGCAACGTCAAGAGACTCTGCATCAACAAAAATGTAAATATAAAATGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACGTCAAGAGACTCTGCATCAACAAAAATGTAAATATAAAATGAA  800

seq1  ATAAGTTCAACAAAATACTCTTCACCACCAAATCTCACCAAGAAGTTATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCAACAAAATACTCTTCACCACCAAATCTCACCAAGAAGTTATT  850

seq1  GTCAACCAGCCATCTCATGAAAATGTACTTTCTCAGCTGGTGAAGGGGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCAGCCATCTCATGAAAATGTACTTTCTCAGCTGGTGAAGGGGAA  900

seq1  ATAAATTTAGCTTCATAACCTTAATTATTCCTTTTGAGGTCAGTGTCTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTAGCTTCATAACCTTAATTATTCCTTTTGAGGTCAGTGTCTTA  950

seq1  TATTTTCTGATCTTGCTTACGTAATGAGGTTTTTGGGACATTTACGATTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGATCTTGCTTACGTAATGAGGTTTTTGGGACATTTACGATTT  1000

seq1  TCTGGTTACTGAATTACTTTTCAGAGCCAATGTATATAAAAAAGGCTCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTACTGAATTACTTTTCAGAGCCAATGTATATAAAAAAGGCTCTG  1050

seq1  CCCTGCCACCAATACCTACTCCTCATGAATTAGGTCTTTATAGAAAACCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCACCAATACCTACTCCTCATGAATTAGGTCTTTATAGAAAACCA  1100

seq1  CAAATAGATGAATTC  1106
      |||||||||||||||
seq2  CAAATAGATGAATTC  1115


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