BAC Information

Click to search

BAC

Clone NameB6Ng01-320N18
Chromosome5 (Build37)
Map Location 12,035,282 - 12,151,690
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
Downstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069, LOC433845, LOC625989, LOC670717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N18.bB6Ng01-320N18.g
ACCGA110120GA110121
length1,2011,130
definitionB6Ng01-320N18.b B6Ng01-320N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,035,282 - 12,036,490)(12,150,542 - 12,151,690)
sequence
gaattctccattctccaaagtcaagaagcttcacacgagattcgttaaca
aaagaaccagggtgtttcccttttatgtcaatatagttttccatgcatca
ctcttgcatcaataacctcctctaggattttgattgcctaaactgttaaa
gaaactaaagatttatctgtgacttcttcagtggctatatttttaaattt
tagttttctgatagttttctatttatttttaattttttactgagtttaat
taaaaacaacttttcttagtaagaaactgactcagaagcaaaagactcca
cacagtgtatattctaattgaaatccatgttgcttttgttactaattatc
tacatgtgtgtatttgtatgttacacggaggcagtcatcattgtacatgt
atatctctatgtgacagcaccaagagaaaaaacttttgagttctattaca
acctactaacagaggtggtgaaaaattatgaaaaaagacagcatattgct
tttactatagatgctgactcttgggaggcgggggcaggagggagatcaga
aacaaagattataagtaagaacagtgaaaaaaaaaactaatacatctgaa
cttccttctagacaacaaatgataagaaacattgcagaaaaactgaaaaa
gactgattgttaatttaatacattcatattaacataatgaggccctttct
ctcttcctcaaatgtgattactgtggagtgagcctaaaactaaaattaat
atcacaaggaatagcgataatgtaaaagaaatttccataataaacctcct
ggagtaatagtgttaaaaaaaatacttatgctaccattttaatcttgatt
ctgaaacaattttccagttcaaagttcaattgtgtaattaatctatatta
tctcacagtaatcctaaatttttatttgagtttactgttctttgtaaatg
ctttacaatataaatagaagaattaacctactaataaattctcatcagcg
acagccatctagtagaacaaaagttatatacataaatgagatagttactg
cttaacatttgccagcattccatattgactagatctagaaaagcagtcct
cagcagccttatgcttcaaaaataattgtcatccttaatgttaatataca
tgggtgataatccataaatattggaaggttccaagagtttcaaaaagtgt
t
gaattccttcatatataatttttcaagaaatattaatgagaaagaagagg
aaagggacccttgaaattcatgattggaatctagaaaagttgttattaca
aaatatgagatctcctagaaaatgaaaaatttatcctattatgttggtga
aactttagttgtagcttccaatgttactagaggacataatctcacagcat
acttcctgatctggcttttaacaatctttgtgcccctttttctgcactgt
tccttgagccttgtgagtgagacatttttttttaatgtcaaaaatagaga
gaataattaaaaataaaagagtgaattcctatatggtccagaaattctat
gaatatatatccagaggaaatgtaaatgtatttacaaacatcttctgtat
gcccagattcagcacagcactgctcataacagctaaaagttagaatcatc
aagcatccatcactgattaatgagaaaagataaaaggacaagatgcataa
tagaataacgttaagtcataaaacataaagaaagggggtcattgtgtcaa
agtattttggactgaatatcactaaatcaagtgaaatagttcaggaacaa
aaaggtatgacttgattcatgtgtggaatgataaaacatctcacagagag
ttgagtgacaattcagaggccagggagagccgatttacaagagggaggtg
ttgagcggtgggtatggttatcattatgtaggaacaagaattttctttgt
acggctgcattgcccagtgactgaagatggcatctctataatgtacattt
caaacagttgaagaaagggcgttgagctctcactacaaaaaaaatagtaa
ctgtttgaggagatagatattctcaatctggcaaacattttgcagtgaat
agttatgacataaaccattaatgtgaacattggatgttttgtgtatctgt
cagttctgaagacattgaaatatatttaaaatatttttatacaaagttat
attagtgaaatttaattttgtatcttaaacgtctacaatcagtgatgtga
ctgtgactcctcaggaagcttgctgtggcagctatactgtactggtagtg
actgagctgcctgtgcacagctatgctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_12035282_12036490
seq2: B6Ng01-320N18.b_46_1246

seq1  GAATTCTCCATTCTCCAAAGTCAAGAAGCTTCACACGAGATTCGTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATTCTCCAAAGTCAAGAAGCTTCACACGAGATTCGTTAACA  50

seq1  AAAGAACCAGGGTGTTTCCCTTTTATGTCAATATAGTTTTCCATGCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCAGGGTGTTTCCCTTTTATGTCAATATAGTTTTCCATGCATCA  100

seq1  CTCTTGCATCAATAACCTCCTCTAGGATTTTGATTGCCTAAACTGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATCAATAACCTCCTCTAGGATTTTGATTGCCTAAACTGTTAAA  150

seq1  GAAACTAAAGATTTATCTGTGACTTCTTCAGTGGCTATATTTTTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAAGATTTATCTGTGACTTCTTCAGTGGCTATATTTTTAAATTT  200

seq1  TAGTTTTCTGATAGTTTTCTATTTATTTTTAATTTTTTACTGAGTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCTGATAGTTTTCTATTTATTTTTAATTTTTTACTGAGTTTAAT  250

seq1  TAAAAACAACTTTTCTTAGTAAGAAACTGACTCAGAAGCAAAAGACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAACTTTTCTTAGTAAGAAACTGACTCAGAAGCAAAAGACTCCA  300

seq1  CACAGTGTATATTCTAATTGAAATCCATGTTGCTTTTGTTACTAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTATATTCTAATTGAAATCCATGTTGCTTTTGTTACTAATTATC  350

seq1  TACATGTGTGTATTTGTATGTTACACGGAGGCAGTCATCATTGTACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTGTATTTGTATGTTACACGGAGGCAGTCATCATTGTACATGT  400

seq1  ATATCTCTATGTGACAGCACCAAGAGAAAAAACTTTTGAGTTCTATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTATGTGACAGCACCAAGAGAAAAAACTTTTGAGTTCTATTACA  450

seq1  ACCTACTAACAGAGGTGGTGAAAAATTATGAAAAAAGACAGCATATTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTAACAGAGGTGGTGAAAAATTATGAAAAAAGACAGCATATTGCT  500

seq1  TTTACTATAGATGCTGACTCTTGGGAGGCGGGGGCAGGAGGGAGATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATAGATGCTGACTCTTGGGAGGCGGGGGCAGGAGGGAGATCAGA  550

seq1  AACAAAGATTATAAGTAAGAACAGTGAAAAAAAAAACTAATACATCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGATTATAAGTAAGAACAGTGAAAAAAAAAACTAATACATCTGAA  600

seq1  CTTCCTTCTAGACAACAAATGATAAGAAACATTGCAGAAAAACTGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTAGACAACAAATGATAAGAAACATTGCAGAAAAACTGAAAAA  650

seq1  GACTGATTGTTAATTTAATACATTCATATTAACATAATGAGGCCCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATTGTTAATTTAATACATTCATATTAACATAATGAGGCCCTTTCT  700

seq1  CTCTTCCTCAAATGTGATTACTGTGGAGTGAGCCTAAAACTAAAATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCAAATGTGATTACTGTGGAGTGAGCCTAAAACTAAAATTAAT  750

seq1  ATCACAAGGAATAGCGATAATGTAAAAGAAATTTCCATAATAAACCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGGAATAGCGATAATGTAAAAGAAATTTCCATAATAAACCTCCT  800

seq1  GGAGTAATAGTGTTAAAAAAAATACTTATGCTACCATTTTAATCTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATAGTGTTAAAAAAAATACTTATGCTACCATTTTAATCTTGATT  850

seq1  CTGAAACAATTTTCCAGTTCAAAGTTCAATTGTGTAATTAATCTATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAATTTTCCAGTTCAAAGTTCAATTGTGTAATTAATCTATATTA  900

seq1  TCTCACAGTAATCCTAAATTTTTATTTGAGTTTACTGTTCTTTGTAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTAATCCTAAATTTTTATTTGAGTTTACTGTTCTTTGTAAATG  950

seq1  CTTTACAATATAAATAGAAGAATTAACCTACTAATAAATTCTCATCAGCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAATATAAATAGAAGAATTAACCTACTAATAAATTCTCATCAGCG  1000

seq1  ACAGCCATCTAGTAG-ACAAAAGTTATATACATAAATGAGAATTAGTTAC  1049
      ||||||||||||||| |||||||||||||||||||||||||  |||||||
seq2  ACAGCCATCTAGTAGAACAAAAGTTATATACATAAATGAGA--TAGTTAC  1048

seq1  TGC-TAACATTTGCCAAGCAATCCAAAATTGAACTAGGATCTAGAAAAGC  1098
      ||| ||||||||||| |||| ||| | |||| |||| |||||||||||||
seq2  TGCTTAACATTTGCC-AGCATTCC-ATATTG-ACTA-GATCTAGAAAAGC  1094

seq1  AGTTCTCAGCCAGCCTAATGCTTCAAAAATATATGTCATCCTTTAATGGT  1148
      ||| ||||| |||||| ||||||||||||||  |||||||| |||||| |
seq2  AGTCCTCAG-CAGCCTTATGCTTCAAAAATAATTGTCATCC-TTAATGTT  1142

seq1  AACTATACATGTGTGGATAATCAATAAAATTATGAAAAGTGTCCAGAGTT  1198
      || |||||||| || ||||||| || ||||  || || ||  | ||||||
seq2  AA-TATACATGGGT-GATAATCCAT-AAATATTGGAAGGTTCCAAGAGTT  1189

seq1  TCAAAAA-TGTT  1209
      ||||||| ||||
seq2  TCAAAAAGTGTT  1201

seq1: chr5_12150542_12151690
seq2: B6Ng01-320N18.g_67_1196 (reverse)

seq1  TACAGCATAGCTGCTGCCACAGGCAAGCTTTCCAGTCACTAACAGTACAG  50
      ||||||||||||| || ||||||| ||||   ||||||||| ||||||||
seq2  TACAGCATAGCTG-TG-CACAGGC-AGCT---CAGTCACTACCAGTACAG  44

seq1  TATAGCTGCCACAGGCAAGCTTTCCTGAGAGTTCACAAGTCAACATCAAC  100
      ||||||||||||| |||||| ||||||||   |||| |||| ||||| ||
seq2  TATAGCTGCCACA-GCAAGC-TTCCTGAGGAGTCAC-AGTC-ACATC-AC  89

seq1  TGATTTGTAAGACGTTTTAAGATACAAAAATTAAAATTTCACTAATATTA  150
      ||| |||| ||||| ||||||||||||||  | ||||||||||||||| |
seq2  TGA-TTGT-AGACG-TTTAAGATACAAAA--TTAAATTTCACTAATATAA  134

seq1  CTTTTGTTATAAAATAATTTTAAATATATTTCAATTGTCTTCAGAACTGA  200
      ||||   |||||||  |||||||||||||||||| |||||||||||||||
seq2  CTTT--GTATAAAAATATTTTAAATATATTTCAA-TGTCTTCAGAACTGA  181

seq1  CAGATACACAAAACATCCAATGTTCACATTAATGGTTTATGTCATAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACACAAAACATCCAATGTTCACATTAATGGTTTATGTCATAACTA  231

seq1  TTCACTGCAAAATGTTTGCCAGATTGAGAATATCTATCTCCTCAAACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCAAAATGTTTGCCAGATTGAGAATATCTATCTCCTCAAACAGT  281

seq1  TACTATTTTTTTTGTAGTGAGAGCTCAACGCCCTTTCTTCAACTGTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTTTTTGTAGTGAGAGCTCAACGCCCTTTCTTCAACTGTTTGA  331

seq1  AATGTACATTATAGAGATGCCATCTTCAGTCACTGGGCAATGCAGCCGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATTATAGAGATGCCATCTTCAGTCACTGGGCAATGCAGCCGTA  381

seq1  CAAAGAAAATTCTTGTTCCTACATAATGATAACCATACCCACCGCTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATTCTTGTTCCTACATAATGATAACCATACCCACCGCTCAAC  431

seq1  ACCTCCCTCTTGTAAATCGGCTCTCCCTGGCCTCTGAATTGTCACTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCTTGTAAATCGGCTCTCCCTGGCCTCTGAATTGTCACTCAAC  481

seq1  TCTCTGTGAGATGTTTTATCATTCCACACATGAATCAAGTCATACCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGATGTTTTATCATTCCACACATGAATCAAGTCATACCTTTT  531

seq1  TGTTCCTGAACTATTTCACTTGATTTAGTGATATTCAGTCCAAAATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGAACTATTTCACTTGATTTAGTGATATTCAGTCCAAAATACTT  581

seq1  TGACACAATGACCCCCTTTCTTTATGTTTTATGACTTAACGTTATTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAATGACCCCCTTTCTTTATGTTTTATGACTTAACGTTATTCTAT  631

seq1  TATGCATCTTGTCCTTTTATCTTTTCTCATTAATCAGTGATGGATGCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATCTTGTCCTTTTATCTTTTCTCATTAATCAGTGATGGATGCTTG  681

seq1  ATGATTCTAACTTTTAGCTGTTATGAGCAGTGCTGTGCTGAATCTGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTAACTTTTAGCTGTTATGAGCAGTGCTGTGCTGAATCTGGGCA  731

seq1  TACAGAAGATGTTTGTAAATACATTTACATTTCCTCTGGATATATATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGATGTTTGTAAATACATTTACATTTCCTCTGGATATATATTCA  781

seq1  TAGAATTTCTGGACCATATAGGAATTCACTCTTTTATTTTTAATTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTCTGGACCATATAGGAATTCACTCTTTTATTTTTAATTATTCT  831

seq1  CTCTATTTTTGACATTAAAAAAAAATGTCTCACTCACAAGGCTCAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTTGACATTAAAAAAAAATGTCTCACTCACAAGGCTCAAGGAA  881

seq1  CAGTGCAGAAAAAGGGGCACAAAGATTGTTAAAAGCCAGATCAGGAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGAAAAAGGGGCACAAAGATTGTTAAAAGCCAGATCAGGAAGTA  931

seq1  TGCTGTGAGATTATGTCCTCTAGTAACATTGGAAGCTACAACTAAAGTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAGATTATGTCCTCTAGTAACATTGGAAGCTACAACTAAAGTTT  981

seq1  CACCAACATAATAGGATAAATTTTTCATTTTCTAGGAGATCTCATATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACATAATAGGATAAATTTTTCATTTTCTAGGAGATCTCATATTTT  1031

seq1  GTAATAACAACTTTTCTAGATTCCAATCATGAATTTCAAGGGTCCCTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACAACTTTTCTAGATTCCAATCATGAATTTCAAGGGTCCCTTTC  1081

seq1  CTCTTCTTTCTCATTAATATTTCTTGAAAAATTATATATGAAGGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCTCATTAATATTTCTTGAAAAATTATATATGAAGGAATTC  1130