BAC Information

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BAC

Clone NameB6Ng01-321D07
Chromosome5 (Build37)12 (Build37)
Map Location 14,837,311 - 14,837,75574,285,598 - 74,286,497
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668085, LOC384149, LOC384148, Sema3e, LOC100042957, Pclo
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321D07.bB6Ng01-321D07.g
ACCGA110377GA110378
length1,005905
definitionB6Ng01-321D07.b B6Ng01-321D07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,837,311 - 14,837,755)(74,285,598 - 74,286,497)
sequence
gaattcagaacttttcagctggggaacggtggataccagtaagtatagct
ttacgaggtacgcctggccttgaactttctaacgaaattcaagacagtct
atcagaagtaaagtggggaatagctttacaaggtacgcctggccttgaac
tttctaacgaaattcaggacagtctatcagaagtaaagtggaaaatggct
ttacgaggtatgcttggccttaaactttctctagtgttagaagccctttt
gttccttttcacatgttatcaagtgattaagatagggctgaaaattctag
aggaaattcaggacaagctatcagaagtaaagcggggagagagagtagga
gcaaagagaaaatatggttcacaaaataagtatacaggcctttccaaggg
tcttgaacctgaggaaaagtttaggtcaggtaagaatacctggggagaga
ttagaaggaaggagaaggaaaaagaaaagaaaaaagatcaatcagcggag
gcttctaagagaaggagcctatactcatcactagatgagctcaaggagcc
agtttttagtagttctgaatcaaatgaaaaggctattagggcctggaagg
cgctctcccgagcaggtgaagccactggacaataatgacagaggcaggct
cttgcagcctacaaggtcttattgtctaccctggagttgtagatcagaat
tgtaaaggggaacttcaggttctctgttcttgtcctcaagttgtcttttc
tatatcacaaagggacagaatagctcaactaataataattttgccaagcc
tacatggctgttttttcttcttctggtattccttgagctgccagagggat
tggttctactgaaagtgattctgattacttaataatgcctttagattgtt
gtcaattttatctactcacgtagggtaaaccctcgtggctcaggccatta
caggtctgacagatggatgtcacgcatatttctcctttgagagaaatcaa
tattt
tccgcggaattctttcctttctttgttttttcgagtttggtctttatgcc
caaagtgactttttagcctttttcagaaaagcgctggaagcacacgatat
gtacgtggcagggtttaatgttacggtctgaatgtttatggctttgcatt
tgccgtaatggtggctaaaagtccatttattttaatcctaactgtaaatt
catttttttaatagtttggaaaaagatttttaatcaggttctgtgttatt
aaatctttttatattcctgtttgaaaattctgttccatttatgtcttaaa
ttttatgagttaatgctgttgtcaaatgcagtagctgattcttattagga
atattgtttgccagatggcttgcttaaagtcagttaaaataatctttaaa
aatggtcattataaagcttttaatgagtattacaggcagtcttattaaaa
ttttctttaaatattaaatagtgtgcctctaggcaattatatggtctatg
cagccttccacagtgaagtgtgagtctcagaacacagaagtaacctcaaa
actggacctgcatgctcgattccccagagcttgcttcgcaggcttgttct
gctctagagacatgcttgtcaccacaacccatgcttagttctgttttaac
actcataaaggccttcaggctccagcatttagagtgcagaaatagaaggt
ttaaagtaaattctgtggcctgatattaaagtttgatacttagaatcctt
aatttttacaaaatttcagctatcaaggcatttaaacattctgttctttt
aatgtgaatgagatactaagattataataaactggttttggttagcaact
tatttaaaaggaacacattgtgttgctttaatatgttttctaaaaactgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14837311_14837755
seq2: B6Ng01-321D07.b_44_491 (reverse)

seq1  TCTCCCCAGGTATTCTTACCTGACCTAAACTTTTCCTCAGGTTTAAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCCCCAGGTATTCTTACCTGACCTAAACTTTTCCTCAGGTTCAAGACC  50

seq1  CTTGGAAAGGCCTGTATACTTAGTTTGTGTACCATATTTTCTCTTTGCTC  100
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  CTTGGAAAGGCCTGTATACTTATTTTGTGAACCATATTTTCTCTTTGCTC  100

seq1  CTACTCTCTCTCCCCGCTTTACTTCTGATAGATTGACTTTAATTTCGTCT  150
      ||||||||||||||||||||||||||||||| ||| | | |||||| |||
seq2  CTACTCTCTCTCCCCGCTTTACTTCTGATAGCTTGTCCTGAATTTCCTCT  150

seq1  AGAATT---CGCCCTGCCTTAATCACTTGATAACATGTGAAAAGGAACAA  197
      ||||||    |||||  |||||||||||||||||||||||||||||||||
seq2  AGAATTTTCAGCCCTATCTTAATCACTTGATAACATGTGAAAAGGAACAA  200

seq1  AAGGGCTTCTAACACTAGAGAAAGTTTAAGGCCAAACATACCTTGTAAAG  247
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  AAGGGCTTCTAACACTAGAGAAAGTTTAAGGCCAAGCATACCTCGTAAAG  250

seq1  CTATTTTCCACTTTACTTCTGATAGACTGTCTTGAATTTCCTTAGAAAGT  297
      | ||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  CCATTTTCCACTTTACTTCTGATAGACTGTCCTGAATTTCGTTAGAAAGT  300

seq1  TCAAGGCCAGGCATACCTTGTAAAGCTATTCCCCACTTTACTTCTGATAG  347
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAGGCGTACCTTGTAAAGCTATTCCCCACTTTACTTCTGATAG  350

seq1  ACTGTCTTGACTTTCCTTAGAAAGTTCAAGGCCAGGCGTACCTTGTAAAG  397
      |||||||||| |||| ||||||||||||||||||||||||||| ||||||
seq2  ACTGTCTTGAATTTCGTTAGAAAGTTCAAGGCCAGGCGTACCTCGTAAAG  400

seq1  CTATACTTACTGGTATCCACCGTTCCCCAGCTGAAAAGTTCTGAATTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTTACTGGTATCCACCGTTCCCCAGCTGAAAAGTTCTGAATTC  448

seq1: chr12_74285598_74286497
seq2: B6Ng01-321D07.g_64_963

seq1  GGAATTCTTTCCTTTCTTTGTTTTTTCGAGTTTGGTCTTTATGCCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTTTCCTTTCTTTGTTTTTTCGAGTTTGGTCTTTATGCCCAAAG  50

seq1  TGACTTTTTAGCCTTTTTCAGAAAAGCGCTGGAAGCACACGATATGTACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTAGCCTTTTTCAGAAAAGCGCTGGAAGCACACGATATGTACG  100

seq1  TGGCAGGGTTTAATGTTACGGTCTGAATGTTTATGGCTTTGCATTTGCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGGTTTAATGTTACGGTCTGAATGTTTATGGCTTTGCATTTGCCG  150

seq1  TAATGGTGGCTAAAAGTCCATTTATTTTAATCCTAACTGTAAATTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGGCTAAAAGTCCATTTATTTTAATCCTAACTGTAAATTCATTT  200

seq1  TTTTAATAGTTTGGAAAAAGATTTTTAATCAGGTTCTGTGTTATTAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGTTTGGAAAAAGATTTTTAATCAGGTTCTGTGTTATTAAATC  250

seq1  TTTTTATATTCCTGTTTGAAAATTCTGTTCCATTTATGTCTTAAATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTCCTGTTTGAAAATTCTGTTCCATTTATGTCTTAAATTTTA  300

seq1  TGAGTTAATGCTGTTGTCAAATGCAGTAGCTGATTCTTATTAGGAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATGCTGTTGTCAAATGCAGTAGCTGATTCTTATTAGGAATATT  350

seq1  GTTTGCCAGATGGCTTGCTTAAAGTCAGTTAAAATAATCTTTAAAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCAGATGGCTTGCTTAAAGTCAGTTAAAATAATCTTTAAAAATGG  400

seq1  TCATTATAAAGCTTTTAATGAGTATTACAGGCAGTCTTATTAAAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAAAGCTTTTAATGAGTATTACAGGCAGTCTTATTAAAATTTTC  450

seq1  TTTAAATATTAAATAGTGTGCCTCTAGGCAATTATATGGTCTATGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATTAAATAGTGTGCCTCTAGGCAATTATATGGTCTATGCAGCC  500

seq1  TTCCACAGTGAAGTGTGAGTCTCAGAACACAGAAGTAACCTCAAAACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGTGAAGTGTGAGTCTCAGAACACAGAAGTAACCTCAAAACTGG  550

seq1  ACCTGCATGCTCGATTCCCCAGAGCTTGCTTCGCAGGCTTGTTCTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATGCTCGATTCCCCAGAGCTTGCTTCGCAGGCTTGTTCTGCTCT  600

seq1  AGAGACATGCTTGTCACCACAACCCATGCTTAGTTCTGTTTTAACACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATGCTTGTCACCACAACCCATGCTTAGTTCTGTTTTAACACTCA  650

seq1  TAAAGGCCTTCAGGCTCCAGCATTTAGAGTGCAGAAATAGAAGGTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCCTTCAGGCTCCAGCATTTAGAGTGCAGAAATAGAAGGTTTAAA  700

seq1  GTAAATTCTGTGGCCTGATATTAAAGTTTGATACTTAGAATCCTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCTGTGGCCTGATATTAAAGTTTGATACTTAGAATCCTTAATTT  750

seq1  TTACAAAATTTCAGCTATCAAGGCATTTAAACATTCTGTTCTTTTAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAATTTCAGCTATCAAGGCATTTAAACATTCTGTTCTTTTAATGT  800

seq1  GAATGAGATACTAAGATTATAATAAACTGGTTTTGGTTAGCAACTTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGATACTAAGATTATAATAAACTGGTTTTGGTTAGCAACTTATTT  850

seq1  AAAAGGAACACATTGTGTTGCTTTAATATGTTTTCTAAAAACTGTGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAACACATTGTGTTGCTTTAATATGTTTTCTAAAAACTGTGTGTG  900