BAC Information

Click to search

BAC

Clone NameB6Ng01-321P20
Chromosome5 (Build37)
Map Location 5,571,894 - 5,663,367
singlet/doubletdoublet
Overlap geneEG667705, A330021E22Rik
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699
Downstream geneSteap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321P20.bB6Ng01-321P20.g
ACCGA110952GA110953
length1,1401,126
definitionB6Ng01-321P20.b B6Ng01-321P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,571,894 - 5,573,035)(5,662,246 - 5,663,367)
sequence
gaattcatatctcattgtactttttatttgtgtttacttgctttccatga
catcatgaatatgcatatgtattaattattatgtgtccttatctgagaaa
tggctcttcaaagcctcagatttatattgggatattaatctttttcttga
ttccacagaacattcttaagctttagcccctaatcagcatccttttgtaa
ttggttattagcactgataacaccttactctttattattatttttttaat
ttttgctttccttttttcatactgagaagtgaacccagggcctcaggcat
gcaagcattctgaagtatataccaagccctaatttttatatttattataa
ctttgagtagcataccaattgctaaactattaaatatttttcttttattt
tttcacaattattgtgtttaaaaaatcttccctaacttcaaattataaag
atatttttaagtcttaaagttgtgatgttttactttttacattcaaaatt
tttaatatccctgggattgagttttgtgatattatgaggaagtaatctaa
atttaattctgttctctatgataatagtcccagtctcatttattgagaag
gccattgttttcatgtatattttgtaatattttatatttaaagtatttta
tagtgataaaggggagtgaaacatttggaaaaaagacctggaaagaaatg
tatcaactattgactgcacctctgtacattttacagcttttcaaaataga
gtttgagtatttgtataggtacagtaaattattttatggaaaatattttt
tacaaagacatgatttatatagctatttaacagatattttgtttagatga
cactgttgagtggctaataataattgaaaagtacaaataaatacttccat
aaaggtagagggtatgcatgtgtgtgtgcttgtgtgtgtgcatgtgtgtg
tgctgcttgtgtgtagtcaaggaaaattggcaccgtgctttggtaataga
attcttgtagacgactacaaagttcagatttaagatgagtatctagtagg
taacatgaacacgtctactatgagaagtccatgagctggacctgggtacc
tgaagcactggagaagtaatggggtgtgagaatgggtttg

gaattcctgttgagacgtcacaactcccagactgcgtcaggaactctgtc
tcctgtggccacatcctggagccttggagagttacttgggagcagtcagt
tggctgggactacttctgtgggaactgggtggagctctctgagggctctc
acacatgtacgccaacagccctcagagtaactacttttacataaagaggg
gatgccaggggaatttccctaatcagttttgtggaggtattcctgtacaa
gatcggagacgtgtgagtgatcaccgctttccactctctgggctacaagg
aagctaggcattgccactatataggtgagtttgactctcatttttctttg
ggcaaagattacatgacacagacaaacgagtttaaagacgttcaatgggt
cattgcaaaagaaaaaagaagttcgtgacataggaagtaacatagctaga
agtgtcttgtgttcattcctgcctctccttctatgagtattcatattgtt
agaaagtactgagagaatcaaaaggcaatttcttcctaaagaaatggaat
agaaaacaattcagaattaggagaaatcttggtgctctctcattcctctt
gggtgtattgcttgcagttgcctttacaaataaagtgtctttaagtccac
caggaactaactgtagccacccagttcctttactcactgtggggcctagt
gttcctagtaatacttaagacgataacctttagtcctctgttcaagtcag
cagagagacctttggacgcttcaaaattcaaagcattccacttttgcctg
tatgcaagaaacagctaaaccattccaccagctatgaaatcaaagacatg
tggagataataatgaagattaagatggagattctgatagtactgatgttc
attgtgttcagcttagtgaaggcctggagactgctcagtgggtatgggtg
ctagatagcctgacttccataccccagaatccaccccacgtgttcaaagg
ggataactgactcctcagtattgttcctctcgccttccacacccacttcc
ctatacaaagtaaataataaggctaacaccttttaaaatgtcagtggtaa
gacttggtgtacaggcttaaccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5571894_5573035
seq2: B6Ng01-321P20.b_46_1185

seq1  GAATTCATATCTCATTGTACTTTTTATTTGTGTTTACTTGCTTTCCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCTCATTGTACTTTTTATTTGTGTTTACTTGCTTTCCATGA  50

seq1  CATCATGAATATGCATATGTATTAATTATTATGTGTCCTTATCTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAATATGCATATGTATTAATTATTATGTGTCCTTATCTGAGAAA  100

seq1  TGGCTCTTCAAAGCCTCAGATTTATATTGGGATATTAATCTTTTTCTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTCAAAGCCTCAGATTTATATTGGGATATTAATCTTTTTCTTGA  150

seq1  TTCCACAGAACATTCTTAAGCTTTAGCCCCTAATCAGCATCCTTTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGAACATTCTTAAGCTTTAGCCCCTAATCAGCATCCTTTTGTAA  200

seq1  TTGGTTATTAGCACTGATAACACCTTACTCTTTATTATTATTTTTTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATTAGCACTGATAACACCTTACTCTTTATTATTATTTTTTTAAT  250

seq1  TTTTGCTTTCCTTTTTTCATACTGAGAAGTGAACCCAGGGCCTCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCCTTTTTTCATACTGAGAAGTGAACCCAGGGCCTCAGGCAT  300

seq1  GCAAGCATTCTGAAGTATATACCAAGCCCTAATTTTTATATTTATTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTCTGAAGTATATACCAAGCCCTAATTTTTATATTTATTATAA  350

seq1  CTTTGAGTAGCATACCAATTGCTAAACTATTAAATATTTTTCTTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTAGCATACCAATTGCTAAACTATTAAATATTTTTCTTTTATTT  400

seq1  TTTCACAATTATTGTGTTTAAAAAATCTTCCCTAACTTCAAATTATAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATTATTGTGTTTAAAAAATCTTCCCTAACTTCAAATTATAAAG  450

seq1  ATATTTTTAAGTCTTAAAGTTGTGATGTTTTACTTTTTACATTCAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAAGTCTTAAAGTTGTGATGTTTTACTTTTTACATTCAAAATT  500

seq1  TTTAATATCCCTGGGATTGAGTTTTGTGATATTATGAGGAAGTAATCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATCCCTGGGATTGAGTTTTGTGATATTATGAGGAAGTAATCTAA  550

seq1  ATTTAATTCTGTTCTCTATGATAATAGTCCCAGTCTCATTTATTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCTGTTCTCTATGATAATAGTCCCAGTCTCATTTATTGAGAAG  600

seq1  GCCATTGTTTTCATGTATATTTTGTAATATTTTATATTTAAAGTATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGTTTTCATGTATATTTTGTAATATTTTATATTTAAAGTATTTTA  650

seq1  TAGTGATAAAGGGGAGTGAAACATTTGGAAAAAAGACCTGGAAAGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATAAAGGGGAGTGAAACATTTGGAAAAAAGACCTGGAAAGAAATG  700

seq1  TATCAACTATTGACTGCACCTCTGTACATTTTACAGCTTTTCAAAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACTATTGACTGCACCTCTGTACATTTTACAGCTTTTCAAAATAGA  750

seq1  GTTTGAGTATTTGTATAGGTACAGTAAATTATTTTATGGAAAATATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTATTTGTATAGGTACAGTAAATTATTTTATGGAAAATATTTTT  800

seq1  TACAAAGACATGATTTATATAGCTATTTAACAGATATTTTGTTTAGATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACATGATTTATATAGCTATTTAACAGATATTTTGTTTAGATGA  850

seq1  CACTGTTGAGTGGCTAATAATAATTGAAAAGTACAAATAAATACTTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGAGTGGCTAATAATAATTGAAAAGTACAAATAAATACTTCCAT  900

seq1  -AAGGTAGAGGGTATGCATGTGTGTGTGCTTGTGTGTGTGCATGTGTGTG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGAGGGTATGCATGTGTGTGTGCTTGTGTGTGTGCATGTGTGTG  950

seq1  TGCTTGCTTGTGTGTAGTCAAGGAAAATTGGCA-CGTGCTTTGGTAAATA  998
      ||| ||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGC-TGCTTGTGTGTAGTCAAGGAAAATTGGCACCGTGCTTTGGT-AATA  998

seq1  GAATTC-TGTAGACGACTACAAAGTTCAGATTTAAGATGAGGTATCCTAG  1047
      |||||| ||||||||||||||||||||||||||||||||| |||| ||||
seq2  GAATTCTTGTAGACGACTACAAAGTTCAGATTTAAGATGA-GTAT-CTAG  1046

seq1  TAGGTAACATTGAACACGTCTACTATGAG-AGTCCATGAGCTGTGGACTG  1096
      ||||||||| ||||||||||||||||||| |||||||||||  |||||  
seq2  TAGGTAACA-TGAACACGTCTACTATGAGAAGTCCATGAGC--TGGACCT  1093

seq1  GGACACCTGAAGCACTGGAGAAGTAAATGGGTGTGAG-ATGGGTTTG  1142
      ||  ||||||||||||||||||||||  ||||||||| |||||||||
seq2  GGGTACCTGAAGCACTGGAGAAGTAATGGGGTGTGAGAATGGGTTTG  1140


seq1: chr5_5662246_5663367
seq2: B6Ng01-321P20.g_69_1194 (reverse)

seq1  ATTTGGTTTAAGCTGTACAC--AGTCTTTACAACTGACATTTTTAAAAGG  48
      |||||||| |  ||||||||  |||| |||| ||||||| ||||||||||
seq2  ATTTGGTTAAGCCTGTACACCAAGTC-TTACCACTGACA-TTTTAAAAGG  48

seq1  TGTTTAGGCTTA-TATTTACTTTGTATAGGGAGGTGGGTGTGG-AGGCGA  96
      || |||| |||| ||||||||||||||||||| |||||||||| ||||||
seq2  TG-TTAGCCTTATTATTTACTTTGTATAGGGAAGTGGGTGTGGAAGGCGA  97

seq1  GA-GAAC-ATACTGAGGAGTCAGTTATCCCCTTTGAACACGT-GGGTGGA  143
      || |||| |||||||||||||||||||||||||||||||||| |||||||
seq2  GAGGAACAATACTGAGGAGTCAGTTATCCCCTTTGAACACGTGGGGTGGA  147

seq1  TTCTGGGGTATGGAAGTCAGGCTATCTAGCACCCATACCCACTGAGCAGT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGTATGGAAGTCAGGCTATCTAGCACCCATACCCACTGAGCAGT  197

seq1  CTCCAGGCCTTCACTAAGCTGAACACAATGAACATCAGTACTATCAGAAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCCTTCACTAAGCTGAACACAATGAACATCAGTACTATCAGAAT  247

seq1  CTCCATCTTAATCTTCATTATTATCTCCACATGTCTTTGATTTCATAGCT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTTAATCTTCATTATTATCTCCACATGTCTTTGATTTCATAGCT  297

seq1  GGTGGAATGGTTTAGCTGTTTCTTGCATACAGGCAAAAGTGGAATGCTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATGGTTTAGCTGTTTCTTGCATACAGGCAAAAGTGGAATGCTTT  347

seq1  GAATTTTGAAGCGTCCAAAGGTCTCTCTGCTGACTTGAACAGAGGACTAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAAGCGTCCAAAGGTCTCTCTGCTGACTTGAACAGAGGACTAA  397

seq1  AGGTTATCGTCTTAAGTATTACTAGGAACACTAGGCCCCACAGTGAGTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCGTCTTAAGTATTACTAGGAACACTAGGCCCCACAGTGAGTAA  447

seq1  AGGAACTGGGTGGCTACAGTTAGTTCCTGGTGGACTTAAAGACACTTTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGGTGGCTACAGTTAGTTCCTGGTGGACTTAAAGACACTTTAT  497

seq1  TTGTAAAGGCAACTGCAAGCAATACACCCAAGAGGAATGAGAGAGCACCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGGCAACTGCAAGCAATACACCCAAGAGGAATGAGAGAGCACCA  547

seq1  AGATTTCTCCTAATTCTGAATTGTTTTCTATTCCATTTCTTTAGGAAGAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTCCTAATTCTGAATTGTTTTCTATTCCATTTCTTTAGGAAGAA  597

seq1  ATTGCCTTTTGATTCTCTCAGTACTTTCTAACAATATGAATACTCATAGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTTGATTCTCTCAGTACTTTCTAACAATATGAATACTCATAGA  647

seq1  AGGAGAGGCAGGAATGAACACAAGACACTTCTAGCTATGTTACTTCCTAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGCAGGAATGAACACAAGACACTTCTAGCTATGTTACTTCCTAT  697

seq1  GTCACGAACTTCTTTTTTCTTTTGCAATGACCCATTGAACGTCTTTAAAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGAACTTCTTTTTTCTTTTGCAATGACCCATTGAACGTCTTTAAAC  747

seq1  TCGTTTGTCTGTGTCATGTAATCTTTGCCCAAAGAAAAATGAGAGTCAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGTCTGTGTCATGTAATCTTTGCCCAAAGAAAAATGAGAGTCAAA  797

seq1  CTCACCTATATAGTGGCAATGCCTAGCTTCCTTGTAGCCCAGAGAGTGGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTATATAGTGGCAATGCCTAGCTTCCTTGTAGCCCAGAGAGTGGA  847

seq1  AAGCGGTGATCACTCACACGTCTCCGATCTTGTACAGGAATACCTCCACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGTGATCACTCACACGTCTCCGATCTTGTACAGGAATACCTCCACA  897

seq1  AAACTGATTAGGGAAATTCCCCTGGCATCCCCTCTTTATGTAAAAGTAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATTAGGGAAATTCCCCTGGCATCCCCTCTTTATGTAAAAGTAGT  947

seq1  TACTCTGAGGGCTGTTGGCGTACATGTGTGAGAGCCCTCAGAGAGCTCCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAGGGCTGTTGGCGTACATGTGTGAGAGCCCTCAGAGAGCTCCA  997

seq1  CCCAGTTCCCACAGAAGTAGTCCCAGCCAACTGACTGCTCCCAAGTAACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCCCACAGAAGTAGTCCCAGCCAACTGACTGCTCCCAAGTAACT  1047

seq1  CTCCAAGGCTCCAGGATGTGGCCACAGGAGACAGAGTTCCTGACGCAGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGCTCCAGGATGTGGCCACAGGAGACAGAGTTCCTGACGCAGTC  1097

seq1  TGGGAGTTGTGACGTCTCAACAGGAATTC  1122
      |||||||||||||||||||||||||||||
seq2  TGGGAGTTGTGACGTCTCAACAGGAATTC  1126


| Home | SequenceCutter | Blast | Download |