BAC Information

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BAC

Clone NameB6Ng01-322B11
Chromosome5 (Build37)
Map Location 5,985,982 - 6,131,019
singlet/doubletdoublet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322B11.bB6Ng01-322B11.g
ACCGA111026GA111027
length1,1791,176
definitionB6Ng01-322B11.b B6Ng01-322B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,985,982 - 5,987,190)(6,129,827 - 6,131,019)
sequence
gaattctcctgagtgctaacatttcttcagctgcttacttacttaaaata
ctcatttaaatgtattcaaccataaagcattatttatacttaagtaaata
atttgaaatatttgatttatttgctgcaggaaaacttctgtaccataaag
atttgccctgtagctttgtgaatccattttaaaatagtaatctttatgtg
gcaatttctccagtttctgatagctctactcctcctgcccctaaccacat
ggttgacatttcctcagtgcctgctgtgttccagatagctttctgagact
gttgaatatattaatttatcccactgcggaactaactatgtctaatcaca
ttgattctctggttttattttgaatgtttggagaattgttctcatgtaat
ggaaatttacgtaagtaactgggaaactctcaagaactcttttttttttt
ttttacatttgtcaattccgatcctggtgcaaaccataaaagacttgtgc
tgttgtttaaagcaatccaaattgcccaataccagcaacaattccagtat
ctacctacttacctaacaactttcaacctactatttaaataaagtcttaa
atggtagtttctgagttaacatttctactcattttatataattttctttt
tactaactatttaataatttctacagataaaatttttgagatataagttt
agaaaccaagtgctagtctttggcaggtttctgtttttccattgctttgt
aataagactattttatttgcctatttatcttcagccttcagatcacatgg
tttggatagaaaagaatggagcccaggtaagtctaatgtagatgaaacca
tggtcatttctgaggttttctgtaacaaggagtcaaccgtaatggcacca
attatttaactgaatggattttacagcaaatggcaaaaaaatctgctatg
taaaagactgacttgcttttgcctactgcagattagactagcttgcacat
agcatttttatttcagttcagtggctgtctatgcccagctagcagaaagt
ggctttctgctaactaaactttgaagtaacttaagcagacgtgatggtca
tgtttggatcacctttttattgtgactaatgttttataaatagcttaact
ggaactgtaagtaaaaagagttgcctgtt

gaattcaaaacttcagaattagctaagatcaatatatgaagcttgcgtct
gggaaatggaatgcacacatgtatatgagacaccatgtaccctatgacta
tgaagaaaattgctgggagaacaatgaatccacaggccacatgcatgtca
cagtgactttgtcgaaaactaggcattccaagaatttctaaccataatct
ggccttgtatttcattacaagttcatatccatcaagtcatatccatcata
tatatatatatcacattatttttccagctagatttataacttttaaatag
tgaaatgtataatatacagaactagtatttttattttagttgctagggta
agagcatcctagaaaagtaaagaccagacttgtctttgaatgaagacctg
tttctctaaacacagctttactttttcaacttcactagagaatgacttga
tcatagaccctaaaagcataaatgaaactaaatgcttatacataatacat
cagtagagccacaatatgcatgcaaaaagtaaacatgctgcaaccataca
ttatcagataaaatacagcaaagaacataaatgtattattcatgacaaga
aatgcaattattaatgcctttggaagcacattggtttttttacccacgga
cacaaaatgattaattttttaaaaatacatgaagtgtgactttacaagct
ttactaaataaattctaaatacttcaacagaagccatgaaaaacaacaga
ctctaaaataaaacagttttctcaattaaaaagtgatcatgcttttctat
ctgtttataacaaatgttgaaacactaaatgatatgttgagaatatggga
cacctgagagtaactccagaaggcatatggaaagaaaagaatttgtcact
tttgtctttgtcacatatgcttccctgaaaatgcttgagaaagtttcata
acaaaaaattcaatgaactatggcaggataatcactgagtcaggaactac
ttgtattaatgcataaatgtgtcaagagcctaattcatttttgcaagctg
tttcacatctacagaaaactgctttgattcatgactagaaatctagtatt
gaatgacataaacattccttttagcttgtattcaagtatagatctaaagg
ctcctaagttaattggcaaatacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5985982_5987190
seq2: B6Ng01-322B11.b_44_1222

seq1  GAATTCTCCTGAGTGCTAACATTTCTTCAGCTGCTTACTTACTTAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAGTGCTAACATTTCTTCAGCTGCTTACTTACTTAAAATA  50

seq1  CTCATTTAAATGTATTCAACCATAAAGCATTATTTATACTTAAGTAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTAAATGTATTCAACCATAAAGCATTATTTATACTTAAGTAAATA  100

seq1  ATTTGAAATATTTGATTTATTTGCTGCAGGAAAACTTCTGTACCATAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATATTTGATTTATTTGCTGCAGGAAAACTTCTGTACCATAAAG  150

seq1  ATTTGCCCTGTAGCTTTGTGAATCCATTTTAAAATAGTAATCTTTATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCTGTAGCTTTGTGAATCCATTTTAAAATAGTAATCTTTATGTG  200

seq1  GCAATTTCTCCAGTTTCTGATAGCTCTACTCCTCCTGCCCCTAACCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCTCCAGTTTCTGATAGCTCTACTCCTCCTGCCCCTAACCACAT  250

seq1  GGTTGACATTTCCTCAGTGCCTGCTGTGTTCCAGATAGCTTTCTGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACATTTCCTCAGTGCCTGCTGTGTTCCAGATAGCTTTCTGAGACT  300

seq1  GTTGAATATATTAATTTATCCCACTGCGGAACTAACTATGTCTAATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATATATTAATTTATCCCACTGCGGAACTAACTATGTCTAATCACA  350

seq1  TTGATTCTCTGGTTTTATTTTGAATGTTTGGAGAATTGTTCTCATGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTCTGGTTTTATTTTGAATGTTTGGAGAATTGTTCTCATGTAAT  400

seq1  GGAAATTTACGTAAGTAACTGGGAAACTCTCAAGAACTCTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTACGTAAGTAACTGGGAAACTCTCAAGAACTCTTTTTTTTTTT  450

seq1  TTTTACATTTGTCAATTCCGATCCTGGTGCAAACCATAAAAGACTTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTTGTCAATTCCGATCCTGGTGCAAACCATAAAAGACTTGTGC  500

seq1  TGTTGTTTAAAGCAATCCAAATTGCCCAATACCAGCAACAATTCCAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTAAAGCAATCCAAATTGCCCAATACCAGCAACAATTCCAGTAT  550

seq1  CTACCTACTTACCTAACAACTTTCAACCTACTATTTAAATAAAGTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACTTACCTAACAACTTTCAACCTACTATTTAAATAAAGTCTTAA  600

seq1  ATGGTAGTTTCTGAGTTAACATTTCTACTCATTTTATATAATTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTTCTGAGTTAACATTTCTACTCATTTTATATAATTTTCTTTT  650

seq1  TACTAACTATTTAATAATTTCTACAGATAAAATTTTTGAGATATAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTATTTAATAATTTCTACAGATAAAATTTTTGAGATATAAGTTT  700

seq1  AGAAACCAAGTGCTAGTCTTTGGCAGGTTTCTGTTTTTCCATTGCTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAGTGCTAGTCTTTGGCAGGTTTCTGTTTTTCCATTGCTTTGT  750

seq1  AATAAGACTATTTTATTTGCCTATTTATCTTCAGCCTTCAGATCACATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGACTATTTTATTTGCCTATTTATCTTCAGCCTTCAGATCACATGG  800

seq1  TTTGGATAGAAAAGAATGGAGCCAAGGTAAGTCTAATGTAGATGAAACCA  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGGATAGAAAAGAATGGAGCCCAGGTAAGTCTAATGTAGATGAAACCA  850

seq1  TGGTCATTTCTGAGGTTTTCTGTAACAAGGAGTCAACCGTAATGGCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGTCATTTCTGAGGTTTTCTGTAACAAGGAGTCAACCGTAATGGCACC-  899

seq1  AATTATTTAACTGAATGGATTTTACAGCAAATGGCAAAAAAATCTGCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAACTGAATGGATTTTACAGCAAATGGCAAAAAAATCTGCTAT  949

seq1  GTAAAAGAACTGACTTGCTTTTGCCTACTGCAGGATTAGACTAGCTTGCA  1000
      ||||||| |||||||||||||||||||||||| |||||||||||||||||
seq2  GTAAAAG-ACTGACTTGCTTTTGCCTACTGCA-GATTAGACTAGCTTGCA  997

seq1  CATAGCA-TTTTATTCAGGTCCAGTGGCTGTCTATGCCCAGCTAGCAGAA  1049
      ||||||| |||||||   || ||||||||||||||||||||||||||| |
seq2  CATAGCATTTTTATTTCAGTTCAGTGGCTGTCTATGCCCAGCTAGCAG-A  1046

seq1  AAGTGGCTTTCTTGCTAACTAAAACTTTTAAAAGTAACCTAAGCAGACAG  1099
      ||||||||||| |||||||| |||||||   ||||||| ||||||||| |
seq2  AAGTGGCTTTC-TGCTAACT-AAACTTT--GAAGTAACTTAAGCAGAC-G  1091

seq1  TGAATGAGTCATTGGTTTGATTAAACACTTTTTTA-TGTGACTAAAAATG  1148
      || ||| |||||  |||||    | ||| |||||| |||||||   ||||
seq2  TG-ATG-GTCAT--GTTTG---GATCACCTTTTTATTGTGACT---AATG  1131

seq1  TTTTATAATATAGGCTTAAAAACAGGAAAAATAGAAAAAGAAAAAAAAAA  1198
      |||||||| ||| ||||   ||| ||         ||  | ||  |||||
seq2  TTTTATAA-ATA-GCTT---AACTGG---------AACTGTAAGTAAAAA  1167

seq1  GAGTTG-CTGTT  1209
      |||||| |||||
seq2  GAGTTGCCTGTT  1179


seq1: chr5_6129827_6131019
seq2: B6Ng01-322B11.g_65_1240 (reverse)

seq1  AAAGTATTTTCATATTACTTTAGTGAGCCTTTTGGGTCTAATACTTTGGA  50
      ||||||||| |  ||||  |||| ||||| ||| | ||| |||| ||| |
seq2  AAAGTATTTGCCAATTAACTTAG-GAGCC-TTTAGATCT-ATAC-TTGAA  46

seq1  TACAAGCTAAAAGGAATGTTTAATTCTCA-TCAATATTAGATTTCTTAGT  99
      ||||||||||||||||||||||  | ||| |||||| |||||||| ||||
seq2  TACAAGCTAAAAGGAATGTTTA--TGTCATTCAATACTAGATTTC-TAGT  93

seq1  CCTTTAAATCAAAGCAAGTTTTTGTAGATGTGAAAACAAGCTTGCAAAAA  149
      |   | ||||||||||  ||| |||||||||||||   ||||||| ||||
seq2  C--ATGAATCAAAGCAGTTTTCTGTAGATGTGAAA--CAGCTTGC-AAAA  138

seq1  ATGAATTTAGGCTCTTGACACATTTTATGCATTAATACAAGTAGTTCTTG  199
      ||||| |||||||||||||||| |||||||||||||||||||||||| ||
seq2  ATGAA-TTAGGCTCTTGACACA-TTTATGCATTAATACAAGTAGTTCCTG  186

seq1  ACTCAGTGATTATCCTGCCATAGTTCATTTGAATTTTTTTGTTATGAAAA  249
      ||||||||||||||||||||||||||| ||||| |||||||||||| |||
seq2  ACTCAGTGATTATCCTGCCATAGTTCA-TTGAA-TTTTTTGTTATG-AAA  233

seq1  CTTTCTCAAGCATTTTCAGAGAAGCATATTGTGACAAAGACAAAAGTGAC  299
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  CTTTCTCAAGCATTTTCAGGGAAGCATA-TGTGACAAAGACAAAAGTGAC  282

seq1  AAATTCTTTTCTTTCCATATGCCTTCTGGAGTTACTCTCAGGTGTCCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTTCTTTCCATATGCCTTCTGGAGTTACTCTCAGGTGTCCCAT  332

seq1  ATTCTCAACATATCATTTAGTGTTTCAACATTTGTTATAAACAGATAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAACATATCATTTAGTGTTTCAACATTTGTTATAAACAGATAGAA  382

seq1  AAGCATGATCACTTTTTAATTGAGAAAACTGTTTTATTTTAGAGTCTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGATCACTTTTTAATTGAGAAAACTGTTTTATTTTAGAGTCTGTT  432

seq1  GTTTTTCATGGCTTCTGTTGAAGTATTTAGAATTTATTTAGTAAAGCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATGGCTTCTGTTGAAGTATTTAGAATTTATTTAGTAAAGCTTG  482

seq1  TAAAGTCACACTTCATGTATTTTTAAAAAATTAATCATTTTGTGTCCGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCACACTTCATGTATTTTTAAAAAATTAATCATTTTGTGTCCGTG  532

seq1  GGTAAAAAAACCAATGTGCTTCCAAAGGCATTAATAATTGCATTTCTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAAAACCAATGTGCTTCCAAAGGCATTAATAATTGCATTTCTTGT  582

seq1  CATGAATAATACATTTATGTTCTTTGCTGTATTTTATCTGATAATGTATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAATACATTTATGTTCTTTGCTGTATTTTATCTGATAATGTATG  632

seq1  GTTGCAGCATGTTTACTTTTTGCATGCATATTGTGGCTCTACTGATGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGCATGTTTACTTTTTGCATGCATATTGTGGCTCTACTGATGTAT  682

seq1  TATGTATAAGCATTTAGTTTCATTTATGCTTTTAGGGTCTATGATCAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAAGCATTTAGTTTCATTTATGCTTTTAGGGTCTATGATCAAGT  732

seq1  CATTCTCTAGTGAAGTTGAAAAAGTAAAGCTGTGTTTAGAGAAACAGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTAGTGAAGTTGAAAAAGTAAAGCTGTGTTTAGAGAAACAGGTC  782

seq1  TTCATTCAAAGACAAGTCTGGTCTTTACTTTTCTAGGATGCTCTTACCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCAAAGACAAGTCTGGTCTTTACTTTTCTAGGATGCTCTTACCCT  832

seq1  AGCAACTAAAATAAAAATACTAGTTCTGTATATTATACATTTCACTATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAAAATAAAAATACTAGTTCTGTATATTATACATTTCACTATTT  882

seq1  AAAAGTTATAAATCTAGCTGGAAAAATAATGTGATATATATATATATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTATAAATCTAGCTGGAAAAATAATGTGATATATATATATATGAT  932

seq1  GGATATGACTTGATGGATATGAACTTGTAATGAAATACAAGGCCAGATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGACTTGATGGATATGAACTTGTAATGAAATACAAGGCCAGATTA  982

seq1  TGGTTAGAAATTCTTGGAATGCCTAGTTTTCGACAAAGTCACTGTGACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGAAATTCTTGGAATGCCTAGTTTTCGACAAAGTCACTGTGACAT  1032

seq1  GCATGTGGCCTGTGGATTCATTGTTCTCCCAGCAATTTTCTTCATAGTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGCCTGTGGATTCATTGTTCTCCCAGCAATTTTCTTCATAGTCA  1082

seq1  TAGGGTACATGGTGTCTCATATACATGTGTGCATTCCATTTCCCAGACGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTACATGGTGTCTCATATACATGTGTGCATTCCATTTCCCAGACGC  1132

seq1  AAGCTTCATATATTGATCTTAGCTAATTCTGAAGTTTTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATATATTGATCTTAGCTAATTCTGAAGTTTTGAATTC  1176


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